Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:61080493-61950497

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 chromosomal duplication duplication, Chr 11, James R Lupski 1
Del(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 complex/cluster/region deletion, Chr 11, James R Lupski 1
Tssr101942 11 61126747 to 61126762 15 + TSS region transcription start site region 101942
Tnfrsf13b 11 61126755 to 61149372 22617 + protein coding gene tumor necrosis factor receptor superfamily, member 13b
Gm12269 11 61130591 to 61131307 716 - pseudogene predicted gene 12269
Tssr101943 11 61142457 to 61142471 14 + TSS region transcription start site region 101943
Tssr101944 11 61142477 to 61142507 30 + TSS region transcription start site region 101944
Tssr101945 11 61142688 to 61142696 8 + TSS region transcription start site region 101945
Cpgi3003 11 61146972 to 61147860 888 CpG island CpG island 3003
Usp22 11 61151785 to 61175055 23270 - protein coding gene ubiquitin specific peptidase 22
Tssr108325 11 61153136 to 61153144 8 - TSS region transcription start site region 108325
Tssr108326 11 61159328 to 61159361 33 - TSS region transcription start site region 108326
Cpgi3004 11 61174110 to 61175594 1484 CpG island CpG island 3004
Tssr108327 11 61174958 to 61174961 3 - TSS region transcription start site region 108327
Tssr108328 11 61174967 to 61174978 11 - TSS region transcription start site region 108328
Tssr108329 11 61174981 to 61175010 29 - TSS region transcription start site region 108329
Tssr108330 11 61175020 to 61175060 40 - TSS region transcription start site region 108330
Gm42080 11 61195699 to 61204089 8390 + lncRNA gene predicted gene, 42080
Rps13-ps5 11 61205720 to 61206175 455 - pseudogene ribosomal protein S13, pseudogene 5
Tssr108331 11 61206193 to 61206203 10 - TSS region transcription start site region 108331
Aldh3a1 11 61208510 to 61218418 9908 + protein coding gene aldehyde dehydrogenase family 3, subfamily A1
Tssr101946 11 61208734 to 61208747 13 + TSS region transcription start site region 101946
Cpgi3005 11 61212142 to 61212613 471 CpG island CpG island 3005
Aldh3a2 11 61224486 to 61267523 43037 - protein coding gene aldehyde dehydrogenase family 3, subfamily A2
Cpgi3006 11 61266761 to 61267653 892 CpG island CpG island 3006
Tssr108332 11 61267074 to 61267086 12 - TSS region transcription start site region 108332
Tssr108333 11 61267087 to 61267101 14 - TSS region transcription start site region 108333
Tssr108334 11 61267102 to 61267134 32 - TSS region transcription start site region 108334
Tssr108335 11 61267141 to 61267154 13 - TSS region transcription start site region 108335
Tssr108336 11 61267155 to 61267173 18 - TSS region transcription start site region 108336
Tssr108337 11 61267177 to 61267198 21 - TSS region transcription start site region 108337
Tssr108338 11 61267423 to 61267474 51 - TSS region transcription start site region 108338
Tssr108339 11 61296570 to 61296573 3 - TSS region transcription start site region 108339
Slc47a2 11 61301631 to 61342860 41229 - protein coding gene solute carrier family 47, member 2
Tssr108340 11 61331712 to 61331716 4 - TSS region transcription start site region 108340
Gm25929 11 61334761 to 61334867 106 + snRNA gene predicted gene, 25929
Cpgi3007 11 61342190 to 61343100 910 CpG island CpG island 3007
Tssr108341 11 61342794 to 61342803 9 - TSS region transcription start site region 108341
Tssr108342 11 61342809 to 61342814 5 - TSS region transcription start site region 108342
Tssr108343 11 61342821 to 61342868 47 - TSS region transcription start site region 108343
Slc47a1 11 61343401 to 61378345 34944 - protein coding gene solute carrier family 47, member 1
Gm18931 11 61356470 to 61357267 797 - pseudogene predicted gene, 18931
Tssr108344 11 61365045 to 61365050 5 - TSS region transcription start site region 108344
Tssr108345 11 61366603 to 61366614 11 - TSS region transcription start site region 108345
Tssr108346 11 61366688 to 61366713 25 - TSS region transcription start site region 108346
Cpgi3008 11 61377771 to 61378424 653 CpG island CpG island 3008
Tssr108347 11 61378052 to 61378085 33 - TSS region transcription start site region 108347
Tssr108348 11 61378089 to 61378092 3 - TSS region transcription start site region 108348
Tssr108349 11 61378103 to 61378108 5 - TSS region transcription start site region 108349
Tssr108350 11 61378306 to 61378347 41 - TSS region transcription start site region 108350
Gm42081 11 61391128 to 61397803 6675 - lncRNA gene predicted gene, 42081
Cpgi3009 11 61407620 to 61408839 1219 CpG island CpG island 3009
n-TWcca5 11 61407916 to 61407987 71 - tRNA gene nuclear encoded tRNA trytophan 5 (anticodon CCA)
Gm45605 11 61408018 to 61412286 4268 + lincRNA gene predicted gene 45605
Gm12271 11 61416402 to 61416815 413 - pseudogene predicted gene 12271
D11Mit317 11 61429688 to 61429806 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 317
Rnf112 11 61448442 to 61454131 5689 - protein coding gene ring finger protein 112
Tssr108351 11 61453516 to 61453553 37 - TSS region transcription start site region 108351
Tssr108352 11 61453857 to 61453866 9 - TSS region transcription start site region 108352
Tssr108353 11 61453890 to 61453910 20 - TSS region transcription start site region 108353
Tssr108354 11 61453921 to 61453982 61 - TSS region transcription start site region 108354
Tssr108355 11 61453992 to 61454019 27 - TSS region transcription start site region 108355
Tssr108356 11 61469387 to 61469392 5 - TSS region transcription start site region 108356
Tssr101947 11 61484885 to 61484910 25 + TSS region transcription start site region 101947
Mfap4 11 61485378 to 61488708 3330 + protein coding gene microfibrillar-associated protein 4
Tssr101948 11 61485438 to 61485452 14 + TSS region transcription start site region 101948
Tssr101949 11 61485703 to 61485741 38 + TSS region transcription start site region 101949
Tssr101950 11 61485747 to 61485776 29 + TSS region transcription start site region 101950
Tssr101951 11 61486025 to 61486039 14 + TSS region transcription start site region 101951
Tssr101952 11 61486107 to 61486130 23 + TSS region transcription start site region 101952
Tssr101953 11 61487071 to 61487113 42 + TSS region transcription start site region 101953
Tssr101954 11 61487744 to 61487756 12 + TSS region transcription start site region 101954
Tssr101955 11 61487896 to 61487909 13 + TSS region transcription start site region 101955
Tssr101956 11 61487952 to 61487963 11 + TSS region transcription start site region 101956
Tssr101957 11 61487997 to 61488011 14 + TSS region transcription start site region 101957
Tssr101958 11 61488016 to 61488031 15 + TSS region transcription start site region 101958
Tssr101959 11 61488043 to 61488071 28 + TSS region transcription start site region 101959
Tssr108357 11 61488115 to 61488130 15 - TSS region transcription start site region 108357
Tssr101960 11 61488146 to 61488164 18 + TSS region transcription start site region 101960
Tssr108358 11 61488218 to 61488277 59 - TSS region transcription start site region 108358
Tssr101961 11 61488286 to 61488305 19 + TSS region transcription start site region 101961
Tssr108359 11 61488291 to 61488317 26 - TSS region transcription start site region 108359
Tssr101962 11 61488337 to 61488349 12 + TSS region transcription start site region 101962
Tssr101963 11 61488385 to 61488420 35 + TSS region transcription start site region 101963
Tssr101964 11 61488448 to 61488460 12 + TSS region transcription start site region 101964
Tssr101965 11 61488482 to 61488515 33 + TSS region transcription start site region 101965
Tssr101966 11 61488669 to 61488673 4 + TSS region transcription start site region 101966
Mapk7 11 61488812 to 61494272 5460 - protein coding gene mitogen-activated protein kinase 7
Cpgi3010 11 61493473 to 61494911 1438 CpG island CpG island 3010
Tssr108360 11 61493881 to 61493890 9 - TSS region transcription start site region 108360
Tssr108361 11 61493969 to 61494046 77 - TSS region transcription start site region 108361
Tssr108362 11 61494173 to 61494261 88 - TSS region transcription start site region 108362
B9d1os 11 61504386 to 61505059 673 - antisense lncRNA gene B9 protein domain 1, opposite strand
Cpgi3011 11 61504566 to 61505339 773 CpG island CpG island 3011
Tssr101967 11 61505138 to 61505210 72 + TSS region transcription start site region 101967
B9d1 11 61505163 to 61512929 7766 + protein coding gene B9 protein domain 1
Tssr108363 11 61515493 to 61515497 4 - TSS region transcription start site region 108363
Epn2 11 61517249 to 61579687 62438 - protein coding gene epsin 2
Gm12272 11 61527755 to 61528577 822 + antisense lncRNA gene predicted gene 12272
D11Mit275 11 61573653 to 61573744 91 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 275
Cpgi3012 11 61578768 to 61580087 1319 CpG island CpG island 3012
Tssr101968 11 61578993 to 61579035 42 + TSS region transcription start site region 101968
Tssr108364 11 61579252 to 61579264 12 - TSS region transcription start site region 108364
Tssr108365 11 61579300 to 61579347 47 - TSS region transcription start site region 108365
Tssr108366 11 61579622 to 61579629 7 - TSS region transcription start site region 108366
Tssr108367 11 61579637 to 61579707 70 - TSS region transcription start site region 108367
2210019G11Rik 11 61617837 to 61619146 1309 unclassified gene RIKEN cDNA 2210019G11 gene
Tssr101969 11 61617865 to 61617881 16 + TSS region transcription start site region 101969
Cpgi3013 11 61620392 to 61620691 299 CpG island CpG island 3013
Tssr108368 11 61647235 to 61647243 8 - TSS region transcription start site region 108368
Tssr101970 11 61647703 to 61647724 21 + TSS region transcription start site region 101970
Tssr101971 11 61651134 to 61651161 27 + TSS region transcription start site region 101971
Tssr108369 11 61653123 to 61653138 15 - TSS region transcription start site region 108369
Tssr101972 11 61653224 to 61653235 11 + TSS region transcription start site region 101972
Tssr101973 11 61653244 to 61653253 9 + TSS region transcription start site region 101973
Tssr101974 11 61653259 to 61653353 94 + TSS region transcription start site region 101974
Grap 11 61653321 to 61672777 19456 + protein coding gene GRB2-related adaptor protein
Tssr101975 11 61653358 to 61653370 12 + TSS region transcription start site region 101975
Tssr101976 11 61656329 to 61656333 4 + TSS region transcription start site region 101976
Tssr101977 11 61661046 to 61661050 4 + TSS region transcription start site region 101977
Tssr101978 11 61669028 to 61669033 5 + TSS region transcription start site region 101978
Tssr101979 11 61672195 to 61672218 23 + TSS region transcription start site region 101979
Slc5a10 11 61672782 to 61720816 48034 - protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 10
Cpgi3014 11 61683827 to 61685177 1350 CpG island CpG island 3014
Tssr101980 11 61684078 to 61684096 18 + TSS region transcription start site region 101980
Fam83g 11 61684091 to 61709951 25860 + protein coding gene family with sequence similarity 83, member G
Tssr101981 11 61684424 to 61684454 30 + TSS region transcription start site region 101981
Tssr101982 11 61684456 to 61684471 15 + TSS region transcription start site region 101982
Tssr108370 11 61719978 to 61719998 20 - TSS region transcription start site region 108370
Tssr108371 11 61720087 to 61720125 38 - TSS region transcription start site region 108371
Tssr108372 11 61720795 to 61720803 8 - TSS region transcription start site region 108372
Tssr108373 11 61720812 to 61720831 19 - TSS region transcription start site region 108373
Prpsap2 11 61729650 to 61762088 32438 - protein coding gene phosphoribosyl pyrophosphate synthetase-associated protein 2
Tssr108374 11 61761583 to 61761590 7 - TSS region transcription start site region 108374
Cpgi3015 11 61761775 to 61762292 517 CpG island CpG island 3015
Tssr108375 11 61762040 to 61762082 42 - TSS region transcription start site region 108375
Ulk2 11 61775649 to 61855073 79424 - protein coding gene unc-51 like kinase 2
Pid3 11 61795994 to 88808902 27012908 QTL prion incubation determinant 3
D11Mit260 11 61795994 to 61796088 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 260
Tssr108376 11 61808646 to 61808650 4 - TSS region transcription start site region 108376
Cpgi3016 11 61854047 to 61855542 1495 CpG island CpG island 3016
Tssr108377 11 61854873 to 61854884 11 - TSS region transcription start site region 108377
Tssr108378 11 61855018 to 61855025 7 - TSS region transcription start site region 108378
Tssr108379 11 61855026 to 61855069 43 - TSS region transcription start site region 108379
Tssr108380 11 61855082 to 61855097 15 - TSS region transcription start site region 108380
Tssr101983 11 61855130 to 61855141 11 + TSS region transcription start site region 101983
Tssr108381 11 61855301 to 61855339 38 - TSS region transcription start site region 108381
A530017D24Rik 11 61864568 to 61868058 3490 - lincRNA gene RIKEN cDNA A530017D24 gene
Gm26964 11 61865475 to 61867639 2164 + lincRNA gene predicted gene, 26964
Akap10 11 61871307 to 61930252 58945 - protein coding gene A kinase (PRKA) anchor protein 10
Tssr108382 11 61878658 to 61878664 6 - TSS region transcription start site region 108382
A430106A12Rik 11 61878735 to 61881451 2716 unclassified non-coding RNA gene RIKEN cDNA A430106A12 gene
Tssr108383 11 61891647 to 61891663 16 - TSS region transcription start site region 108383
Tssr108384 11 61915172 to 61915173 1 - TSS region transcription start site region 108384
Tssr108385 11 61915193 to 61915208 15 - TSS region transcription start site region 108385
Tssr108386 11 61927019 to 61927045 26 - TSS region transcription start site region 108386
Cpgi3017 11 61929594 to 61930557 963 CpG island CpG island 3017
Tssr108387 11 61930197 to 61930243 46 - TSS region transcription start site region 108387
Tssr108388 11 61930246 to 61930257 11 - TSS region transcription start site region 108388
Gm23721 11 61936446 to 61936552 106 - snRNA gene predicted gene, 23721