Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:60839328-61479361

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 chromosomal duplication duplication, Chr 11, James R Lupski 1
Del(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 complex/cluster/region deletion, Chr 11, James R Lupski 1
Dhrs7b 11 60830631 to 60858423 27792 + protein coding gene dehydrogenase/reductase (SDR family) member 7B
Tmem11 11 60864452 to 60879038 14586 - protein coding gene transmembrane protein 11
Cpgi2998 11 60878000 to 60879392 1392 CpG island CpG island 2998
Tssr101926 11 60878191 to 60878196 5 + TSS region transcription start site region 101926
Tssr101927 11 60878361 to 60878375 14 + TSS region transcription start site region 101927
Tssr108314 11 60878764 to 60878812 48 - TSS region transcription start site region 108314
Tssr101928 11 60878944 to 60878999 55 + TSS region transcription start site region 101928
Tssr108315 11 60879406 to 60879426 20 - TSS region transcription start site region 108315
Gm26534 11 60884200 to 60886385 2185 + lincRNA gene predicted gene, 26534
Cpgi2999 11 60899278 to 60899436 158 CpG island CpG island 2999
Natd1 11 60902246 to 60913792 11546 - protein coding gene N-acetyltransferase domain containing 1
Cpgi3000 11 60913073 to 60914233 1160 CpG island CpG island 3000
Tssr108316 11 60913732 to 60913751 19 - TSS region transcription start site region 108316
Tssr108317 11 60913757 to 60913771 14 - TSS region transcription start site region 108317
Tssr108318 11 60913775 to 60913816 41 - TSS region transcription start site region 108318
Gm39830 11 60913917 to 60917697 3780 + lncRNA gene predicted gene, 39830
Map2k3os 11 60920941 to 60931867 10926 - antisense lncRNA gene mitogen-activated protein kinase kinase 3, opposite strand
Tssr101929 11 60930939 to 60930960 21 + TSS region transcription start site region 101929
Tssr101930 11 60931143 to 60931167 24 + TSS region transcription start site region 101930
Cpgi3001 11 60931296 to 60932601 1305 CpG island CpG island 3001
Tssr108319 11 60931680 to 60931701 21 - TSS region transcription start site region 108319
Tssr3515 11 60931802 to 60931816 14 - TSS region transcription start site region 3515
Tssr108320 11 60931826 to 60931853 27 - TSS region transcription start site region 108320
Tssr108321 11 60931858 to 60931903 45 - TSS region transcription start site region 108321
Tssr101931 11 60931998 to 60932038 40 + TSS region transcription start site region 101931
Tssr101932 11 60932045 to 60932123 78 + TSS region transcription start site region 101932
Map2k3 11 60932057 to 60952803 20746 + protein coding gene mitogen-activated protein kinase kinase 3
Tssr108322 11 60932941 to 60932985 44 - TSS region transcription start site region 108322
Tssr108323 11 60935322 to 60935339 17 - TSS region transcription start site region 108323
Tssr108324 11 60935352 to 60935370 18 - TSS region transcription start site region 108324
Tssr101933 11 60935619 to 60935631 12 + TSS region transcription start site region 101933
Tssr101934 11 60941658 to 60941669 11 + TSS region transcription start site region 101934
Tssr101935 11 60945236 to 60945241 5 + TSS region transcription start site region 101935
Gm35681 11 60979009 to 60993091 14082 + lncRNA gene predicted gene, 35681
Cpgi3002 11 61021738 to 61023577 1839 CpG island CpG island 3002
Tssr101936 11 61022123 to 61022161 38 + TSS region transcription start site region 101936
Tssr101937 11 61022268 to 61022312 44 + TSS region transcription start site region 101937
Tssr101938 11 61022332 to 61022343 11 + TSS region transcription start site region 101938
Tssr101939 11 61022560 to 61022570 10 + TSS region transcription start site region 101939
Kcnj12 11 61022564 to 61071131 48567 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 12
Tssr101940 11 61022580 to 61022609 29 + TSS region transcription start site region 101940
Gm46283 11 61048155 to 61065482 17327 - lncRNA gene predicted gene, 46283
Tssr101941 11 61065798 to 61065816 18 + TSS region transcription start site region 101941
Tssr101942 11 61126747 to 61126762 15 + TSS region transcription start site region 101942
Tnfrsf13b 11 61126755 to 61149372 22617 + protein coding gene tumor necrosis factor receptor superfamily, member 13b
Gm12269 11 61130591 to 61131307 716 - pseudogene predicted gene 12269
Tssr101943 11 61142457 to 61142471 14 + TSS region transcription start site region 101943
Tssr101944 11 61142477 to 61142507 30 + TSS region transcription start site region 101944
Tssr101945 11 61142688 to 61142696 8 + TSS region transcription start site region 101945
Cpgi3003 11 61146972 to 61147860 888 CpG island CpG island 3003
Usp22 11 61151785 to 61175055 23270 - protein coding gene ubiquitin specific peptidase 22
Tssr108325 11 61153136 to 61153144 8 - TSS region transcription start site region 108325
Tssr108326 11 61159328 to 61159361 33 - TSS region transcription start site region 108326
Cpgi3004 11 61174110 to 61175594 1484 CpG island CpG island 3004
Tssr108327 11 61174958 to 61174961 3 - TSS region transcription start site region 108327
Tssr108328 11 61174967 to 61174978 11 - TSS region transcription start site region 108328
Tssr108329 11 61174981 to 61175010 29 - TSS region transcription start site region 108329
Tssr108330 11 61175020 to 61175060 40 - TSS region transcription start site region 108330
Gm42080 11 61195699 to 61204089 8390 + lncRNA gene predicted gene, 42080
Rps13-ps5 11 61205720 to 61206175 455 - pseudogene ribosomal protein S13, pseudogene 5
Tssr108331 11 61206193 to 61206203 10 - TSS region transcription start site region 108331
Aldh3a1 11 61208510 to 61218418 9908 + protein coding gene aldehyde dehydrogenase family 3, subfamily A1
Tssr101946 11 61208734 to 61208747 13 + TSS region transcription start site region 101946
Cpgi3005 11 61212142 to 61212613 471 CpG island CpG island 3005
Aldh3a2 11 61224486 to 61267523 43037 - protein coding gene aldehyde dehydrogenase family 3, subfamily A2
Cpgi3006 11 61266761 to 61267653 892 CpG island CpG island 3006
Tssr108332 11 61267074 to 61267086 12 - TSS region transcription start site region 108332
Tssr108333 11 61267087 to 61267101 14 - TSS region transcription start site region 108333
Tssr108334 11 61267102 to 61267134 32 - TSS region transcription start site region 108334
Tssr108335 11 61267141 to 61267154 13 - TSS region transcription start site region 108335
Tssr108336 11 61267155 to 61267173 18 - TSS region transcription start site region 108336
Tssr108337 11 61267177 to 61267198 21 - TSS region transcription start site region 108337
Tssr108338 11 61267423 to 61267474 51 - TSS region transcription start site region 108338
Tssr108339 11 61296570 to 61296573 3 - TSS region transcription start site region 108339
Slc47a2 11 61301631 to 61342860 41229 - protein coding gene solute carrier family 47, member 2
Tssr108340 11 61331712 to 61331716 4 - TSS region transcription start site region 108340
Gm25929 11 61334761 to 61334867 106 + snRNA gene predicted gene, 25929
Cpgi3007 11 61342190 to 61343100 910 CpG island CpG island 3007
Tssr108341 11 61342794 to 61342803 9 - TSS region transcription start site region 108341
Tssr108342 11 61342809 to 61342814 5 - TSS region transcription start site region 108342
Tssr108343 11 61342821 to 61342868 47 - TSS region transcription start site region 108343
Slc47a1 11 61343401 to 61378345 34944 - protein coding gene solute carrier family 47, member 1
Gm18931 11 61356470 to 61357267 797 - pseudogene predicted gene, 18931
Tssr108344 11 61365045 to 61365050 5 - TSS region transcription start site region 108344
Tssr108345 11 61366603 to 61366614 11 - TSS region transcription start site region 108345
Tssr108346 11 61366688 to 61366713 25 - TSS region transcription start site region 108346
Cpgi3008 11 61377771 to 61378424 653 CpG island CpG island 3008
Tssr108347 11 61378052 to 61378085 33 - TSS region transcription start site region 108347
Tssr108348 11 61378089 to 61378092 3 - TSS region transcription start site region 108348
Tssr108349 11 61378103 to 61378108 5 - TSS region transcription start site region 108349
Tssr108350 11 61378306 to 61378347 41 - TSS region transcription start site region 108350
Gm42081 11 61391128 to 61397803 6675 - lncRNA gene predicted gene, 42081
Cpgi3009 11 61407620 to 61408839 1219 CpG island CpG island 3009
n-TWcca5 11 61407916 to 61407987 71 - tRNA gene nuclear encoded tRNA trytophan 5 (anticodon CCA)
Gm45605 11 61408018 to 61412286 4268 + lincRNA gene predicted gene 45605
Gm12271 11 61416402 to 61416815 413 - pseudogene predicted gene 12271
D11Mit317 11 61429688 to 61429806 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 317
Rnf112 11 61448442 to 61454131 5689 - protein coding gene ring finger protein 112
Tssr108351 11 61453516 to 61453553 37 - TSS region transcription start site region 108351
Tssr108352 11 61453857 to 61453866 9 - TSS region transcription start site region 108352
Tssr108353 11 61453890 to 61453910 20 - TSS region transcription start site region 108353
Tssr108354 11 61453921 to 61453982 61 - TSS region transcription start site region 108354
Tssr108355 11 61453992 to 61454019 27 - TSS region transcription start site region 108355
Tssr108356 11 61469387 to 61469392 5 - TSS region transcription start site region 108356