Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:60746738-61298577

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Top3a 11 60740058 to 60777365 37307 - protein coding gene topoisomerase (DNA) III alpha
Gm3881 11 60765842 to 60769793 3951 unclassified gene predicted gene 3881
Tssr101915 11 60775107 to 60775156 49 + TSS region transcription start site region 101915
Tssr101916 11 60775180 to 60775205 25 + TSS region transcription start site region 101916
Cpgi2995 11 60776680 to 60777982 1302 CpG island CpG island 2995
Tssr101917 11 60776872 to 60776890 18 + TSS region transcription start site region 101917
Tssr101918 11 60776907 to 60776948 41 + TSS region transcription start site region 101918
Tssr108303 11 60777214 to 60777225 11 - TSS region transcription start site region 108303
Tssr108304 11 60777226 to 60777239 13 - TSS region transcription start site region 108304
Tssr108305 11 60777241 to 60777284 43 - TSS region transcription start site region 108305
Tssr108306 11 60777435 to 60777460 25 - TSS region transcription start site region 108306
Smcr8 11 60777525 to 60788287 10762 + protein coding gene Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
Tssr101919 11 60777531 to 60777563 32 + TSS region transcription start site region 101919
Tssr101920 11 60777575 to 60777589 14 + TSS region transcription start site region 101920
Tssr101921 11 60778904 to 60778943 39 + TSS region transcription start site region 101921
Tssr101922 11 60786138 to 60786145 7 + TSS region transcription start site region 101922
Shmt1 11 60788886 to 60811265 22379 - protein coding gene serine hydroxymethyltransferase 1 (soluble)
1110055C04Rik 11 60796305 to 60797240 935 unclassified gene RIKEN cDNA 1110055C04 gene
Gm24945 11 60804578 to 60804703 125 + snoRNA gene predicted gene, 24945
Tssr108307 11 60808819 to 60808830 11 - TSS region transcription start site region 108307
Tssr108308 11 60808843 to 60808875 32 - TSS region transcription start site region 108308
Cpgi2996 11 60810890 to 60811383 493 CpG island CpG island 2996
Tssr108309 11 60811024 to 60811027 3 - TSS region transcription start site region 108309
Tssr108310 11 60811105 to 60811210 105 - TSS region transcription start site region 108310
Tssr108311 11 60811228 to 60811241 13 - TSS region transcription start site region 108311
Tssr108312 11 60811255 to 60811270 15 - TSS region transcription start site region 108312
Gm12611 11 60816375 to 60817747 1372 + pseudogene predicted gene 12611
Gm12618 11 60818796 to 60819278 482 - pseudogene predicted gene 12618
Tssr108313 11 60819316 to 60819317 1 - TSS region transcription start site region 108313
Cpgi2997 11 60830518 to 60831108 590 CpG island CpG island 2997
Dhrs7b 11 60830631 to 60858423 27792 + protein coding gene dehydrogenase/reductase (SDR family) member 7B
Tssr101923 11 60830658 to 60830686 28 + TSS region transcription start site region 101923
Tssr101924 11 60830690 to 60830730 40 + TSS region transcription start site region 101924
Tssr101925 11 60837837 to 60837866 29 + TSS region transcription start site region 101925
Tmem11 11 60864452 to 60879038 14586 - protein coding gene transmembrane protein 11
Cpgi2998 11 60878000 to 60879392 1392 CpG island CpG island 2998
Tssr101926 11 60878191 to 60878196 5 + TSS region transcription start site region 101926
Tssr101927 11 60878361 to 60878375 14 + TSS region transcription start site region 101927
Tssr108314 11 60878764 to 60878812 48 - TSS region transcription start site region 108314
Tssr101928 11 60878944 to 60878999 55 + TSS region transcription start site region 101928
Tssr108315 11 60879406 to 60879426 20 - TSS region transcription start site region 108315
Gm26534 11 60884200 to 60886385 2185 + lincRNA gene predicted gene, 26534
Cpgi2999 11 60899278 to 60899436 158 CpG island CpG island 2999
Natd1 11 60902246 to 60913792 11546 - protein coding gene N-acetyltransferase domain containing 1
Cpgi3000 11 60913073 to 60914233 1160 CpG island CpG island 3000
Tssr108316 11 60913732 to 60913751 19 - TSS region transcription start site region 108316
Tssr108317 11 60913757 to 60913771 14 - TSS region transcription start site region 108317
Tssr108318 11 60913775 to 60913816 41 - TSS region transcription start site region 108318
Gm39830 11 60913917 to 60917697 3780 + lncRNA gene predicted gene, 39830
Map2k3os 11 60920941 to 60931867 10926 - antisense lncRNA gene mitogen-activated protein kinase kinase 3, opposite strand
Tssr101929 11 60930939 to 60930960 21 + TSS region transcription start site region 101929
Tssr101930 11 60931143 to 60931167 24 + TSS region transcription start site region 101930
Cpgi3001 11 60931296 to 60932601 1305 CpG island CpG island 3001
Tssr108319 11 60931680 to 60931701 21 - TSS region transcription start site region 108319
Tssr3515 11 60931802 to 60931816 14 - TSS region transcription start site region 3515
Tssr108320 11 60931826 to 60931853 27 - TSS region transcription start site region 108320
Tssr108321 11 60931858 to 60931903 45 - TSS region transcription start site region 108321
Tssr101931 11 60931998 to 60932038 40 + TSS region transcription start site region 101931
Tssr101932 11 60932045 to 60932123 78 + TSS region transcription start site region 101932
Map2k3 11 60932057 to 60952803 20746 + protein coding gene mitogen-activated protein kinase kinase 3
Tssr108322 11 60932941 to 60932985 44 - TSS region transcription start site region 108322
Tssr108323 11 60935322 to 60935339 17 - TSS region transcription start site region 108323
Tssr108324 11 60935352 to 60935370 18 - TSS region transcription start site region 108324
Tssr101933 11 60935619 to 60935631 12 + TSS region transcription start site region 101933
Tssr101934 11 60941658 to 60941669 11 + TSS region transcription start site region 101934
Tssr101935 11 60945236 to 60945241 5 + TSS region transcription start site region 101935
Gm35681 11 60979009 to 60993091 14082 + lncRNA gene predicted gene, 35681
Cpgi3002 11 61021738 to 61023577 1839 CpG island CpG island 3002
Tssr101936 11 61022123 to 61022161 38 + TSS region transcription start site region 101936
Tssr101937 11 61022268 to 61022312 44 + TSS region transcription start site region 101937
Tssr101938 11 61022332 to 61022343 11 + TSS region transcription start site region 101938
Tssr101939 11 61022560 to 61022570 10 + TSS region transcription start site region 101939
Kcnj12 11 61022564 to 61071131 48567 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 12
Tssr101940 11 61022580 to 61022609 29 + TSS region transcription start site region 101940
Gm46283 11 61048155 to 61065482 17327 - lncRNA gene predicted gene, 46283
Tssr101941 11 61065798 to 61065816 18 + TSS region transcription start site region 101941
Tssr101942 11 61126747 to 61126762 15 + TSS region transcription start site region 101942
Tnfrsf13b 11 61126755 to 61149372 22617 + protein coding gene tumor necrosis factor receptor superfamily, member 13b
Gm12269 11 61130591 to 61131307 716 - pseudogene predicted gene 12269
Tssr101943 11 61142457 to 61142471 14 + TSS region transcription start site region 101943
Tssr101944 11 61142477 to 61142507 30 + TSS region transcription start site region 101944
Tssr101945 11 61142688 to 61142696 8 + TSS region transcription start site region 101945
Cpgi3003 11 61146972 to 61147860 888 CpG island CpG island 3003
Usp22 11 61151785 to 61175055 23270 - protein coding gene ubiquitin specific peptidase 22
Tssr108325 11 61153136 to 61153144 8 - TSS region transcription start site region 108325
Tssr108326 11 61159328 to 61159361 33 - TSS region transcription start site region 108326
Cpgi3004 11 61174110 to 61175594 1484 CpG island CpG island 3004
Tssr108327 11 61174958 to 61174961 3 - TSS region transcription start site region 108327
Tssr108328 11 61174967 to 61174978 11 - TSS region transcription start site region 108328
Tssr108329 11 61174981 to 61175010 29 - TSS region transcription start site region 108329
Tssr108330 11 61175020 to 61175060 40 - TSS region transcription start site region 108330
Gm42080 11 61195699 to 61204089 8390 + lncRNA gene predicted gene, 42080
Rps13-ps5 11 61205720 to 61206175 455 - pseudogene ribosomal protein S13, pseudogene 5
Tssr108331 11 61206193 to 61206203 10 - TSS region transcription start site region 108331
Aldh3a1 11 61208510 to 61218418 9908 + protein coding gene aldehyde dehydrogenase family 3, subfamily A1
Tssr101946 11 61208734 to 61208747 13 + TSS region transcription start site region 101946
Cpgi3005 11 61212142 to 61212613 471 CpG island CpG island 3005
Aldh3a2 11 61224486 to 61267523 43037 - protein coding gene aldehyde dehydrogenase family 3, subfamily A2
Cpgi3006 11 61266761 to 61267653 892 CpG island CpG island 3006
Tssr108332 11 61267074 to 61267086 12 - TSS region transcription start site region 108332
Tssr108333 11 61267087 to 61267101 14 - TSS region transcription start site region 108333
Tssr108334 11 61267102 to 61267134 32 - TSS region transcription start site region 108334
Tssr108335 11 61267141 to 61267154 13 - TSS region transcription start site region 108335
Tssr108336 11 61267155 to 61267173 18 - TSS region transcription start site region 108336
Tssr108337 11 61267177 to 61267198 21 - TSS region transcription start site region 108337
Tssr108338 11 61267423 to 61267474 51 - TSS region transcription start site region 108338
Tssr108339 11 61296570 to 61296573 3 - TSS region transcription start site region 108339