Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:60739328-61579361

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 chromosomal duplication duplication, Chr 11, James R Lupski 1
Del(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 complex/cluster/region deletion, Chr 11, James R Lupski 1
Top3a 11 60740058 to 60777365 37307 - protein coding gene topoisomerase (DNA) III alpha
Gm3881 11 60765842 to 60769793 3951 unclassified gene predicted gene 3881
Tssr101915 11 60775107 to 60775156 49 + TSS region transcription start site region 101915
Tssr101916 11 60775180 to 60775205 25 + TSS region transcription start site region 101916
Cpgi2995 11 60776680 to 60777982 1302 CpG island CpG island 2995
Tssr101917 11 60776872 to 60776890 18 + TSS region transcription start site region 101917
Tssr101918 11 60776907 to 60776948 41 + TSS region transcription start site region 101918
Tssr108303 11 60777214 to 60777225 11 - TSS region transcription start site region 108303
Tssr108304 11 60777226 to 60777239 13 - TSS region transcription start site region 108304
Tssr108305 11 60777241 to 60777284 43 - TSS region transcription start site region 108305
Tssr108306 11 60777435 to 60777460 25 - TSS region transcription start site region 108306
Smcr8 11 60777525 to 60788287 10762 + protein coding gene Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
Tssr101919 11 60777531 to 60777563 32 + TSS region transcription start site region 101919
Tssr101920 11 60777575 to 60777589 14 + TSS region transcription start site region 101920
Tssr101921 11 60778904 to 60778943 39 + TSS region transcription start site region 101921
Tssr101922 11 60786138 to 60786145 7 + TSS region transcription start site region 101922
Shmt1 11 60788886 to 60811265 22379 - protein coding gene serine hydroxymethyltransferase 1 (soluble)
1110055C04Rik 11 60796305 to 60797240 935 unclassified gene RIKEN cDNA 1110055C04 gene
Gm24945 11 60804578 to 60804703 125 + snoRNA gene predicted gene, 24945
Tssr108307 11 60808819 to 60808830 11 - TSS region transcription start site region 108307
Tssr108308 11 60808843 to 60808875 32 - TSS region transcription start site region 108308
Cpgi2996 11 60810890 to 60811383 493 CpG island CpG island 2996
Tssr108309 11 60811024 to 60811027 3 - TSS region transcription start site region 108309
Tssr108310 11 60811105 to 60811210 105 - TSS region transcription start site region 108310
Tssr108311 11 60811228 to 60811241 13 - TSS region transcription start site region 108311
Tssr108312 11 60811255 to 60811270 15 - TSS region transcription start site region 108312
Gm12611 11 60816375 to 60817747 1372 + pseudogene predicted gene 12611
Gm12618 11 60818796 to 60819278 482 - pseudogene predicted gene 12618
Tssr108313 11 60819316 to 60819317 1 - TSS region transcription start site region 108313
Cpgi2997 11 60830518 to 60831108 590 CpG island CpG island 2997
Dhrs7b 11 60830631 to 60858423 27792 + protein coding gene dehydrogenase/reductase (SDR family) member 7B
Tssr101923 11 60830658 to 60830686 28 + TSS region transcription start site region 101923
Tssr101924 11 60830690 to 60830730 40 + TSS region transcription start site region 101924
Tssr101925 11 60837837 to 60837866 29 + TSS region transcription start site region 101925
Tmem11 11 60864452 to 60879038 14586 - protein coding gene transmembrane protein 11
Cpgi2998 11 60878000 to 60879392 1392 CpG island CpG island 2998
Tssr101926 11 60878191 to 60878196 5 + TSS region transcription start site region 101926
Tssr101927 11 60878361 to 60878375 14 + TSS region transcription start site region 101927
Tssr108314 11 60878764 to 60878812 48 - TSS region transcription start site region 108314
Tssr101928 11 60878944 to 60878999 55 + TSS region transcription start site region 101928
Tssr108315 11 60879406 to 60879426 20 - TSS region transcription start site region 108315
Gm26534 11 60884200 to 60886385 2185 + lincRNA gene predicted gene, 26534
Cpgi2999 11 60899278 to 60899436 158 CpG island CpG island 2999
Natd1 11 60902246 to 60913792 11546 - protein coding gene N-acetyltransferase domain containing 1
Cpgi3000 11 60913073 to 60914233 1160 CpG island CpG island 3000
Tssr108316 11 60913732 to 60913751 19 - TSS region transcription start site region 108316
Tssr108317 11 60913757 to 60913771 14 - TSS region transcription start site region 108317
Tssr108318 11 60913775 to 60913816 41 - TSS region transcription start site region 108318
Gm39830 11 60913917 to 60917697 3780 + lncRNA gene predicted gene, 39830
Map2k3os 11 60920941 to 60931867 10926 - antisense lncRNA gene mitogen-activated protein kinase kinase 3, opposite strand
Tssr101929 11 60930939 to 60930960 21 + TSS region transcription start site region 101929
Tssr101930 11 60931143 to 60931167 24 + TSS region transcription start site region 101930
Cpgi3001 11 60931296 to 60932601 1305 CpG island CpG island 3001
Tssr108319 11 60931680 to 60931701 21 - TSS region transcription start site region 108319
Tssr3515 11 60931802 to 60931816 14 - TSS region transcription start site region 3515
Tssr108320 11 60931826 to 60931853 27 - TSS region transcription start site region 108320
Tssr108321 11 60931858 to 60931903 45 - TSS region transcription start site region 108321
Tssr101931 11 60931998 to 60932038 40 + TSS region transcription start site region 101931
Tssr101932 11 60932045 to 60932123 78 + TSS region transcription start site region 101932
Map2k3 11 60932057 to 60952803 20746 + protein coding gene mitogen-activated protein kinase kinase 3
Tssr108322 11 60932941 to 60932985 44 - TSS region transcription start site region 108322
Tssr108323 11 60935322 to 60935339 17 - TSS region transcription start site region 108323
Tssr108324 11 60935352 to 60935370 18 - TSS region transcription start site region 108324
Tssr101933 11 60935619 to 60935631 12 + TSS region transcription start site region 101933
Tssr101934 11 60941658 to 60941669 11 + TSS region transcription start site region 101934
Tssr101935 11 60945236 to 60945241 5 + TSS region transcription start site region 101935
Gm35681 11 60979009 to 60993091 14082 + lncRNA gene predicted gene, 35681
Cpgi3002 11 61021738 to 61023577 1839 CpG island CpG island 3002
Tssr101936 11 61022123 to 61022161 38 + TSS region transcription start site region 101936
Tssr101937 11 61022268 to 61022312 44 + TSS region transcription start site region 101937
Tssr101938 11 61022332 to 61022343 11 + TSS region transcription start site region 101938
Tssr101939 11 61022560 to 61022570 10 + TSS region transcription start site region 101939
Kcnj12 11 61022564 to 61071131 48567 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 12
Tssr101940 11 61022580 to 61022609 29 + TSS region transcription start site region 101940
Gm46283 11 61048155 to 61065482 17327 - lncRNA gene predicted gene, 46283
Tssr101941 11 61065798 to 61065816 18 + TSS region transcription start site region 101941
Tssr101942 11 61126747 to 61126762 15 + TSS region transcription start site region 101942
Tnfrsf13b 11 61126755 to 61149372 22617 + protein coding gene tumor necrosis factor receptor superfamily, member 13b
Gm12269 11 61130591 to 61131307 716 - pseudogene predicted gene 12269
Tssr101943 11 61142457 to 61142471 14 + TSS region transcription start site region 101943
Tssr101944 11 61142477 to 61142507 30 + TSS region transcription start site region 101944
Tssr101945 11 61142688 to 61142696 8 + TSS region transcription start site region 101945
Cpgi3003 11 61146972 to 61147860 888 CpG island CpG island 3003
Usp22 11 61151785 to 61175055 23270 - protein coding gene ubiquitin specific peptidase 22
Tssr108325 11 61153136 to 61153144 8 - TSS region transcription start site region 108325
Tssr108326 11 61159328 to 61159361 33 - TSS region transcription start site region 108326
Cpgi3004 11 61174110 to 61175594 1484 CpG island CpG island 3004
Tssr108327 11 61174958 to 61174961 3 - TSS region transcription start site region 108327
Tssr108328 11 61174967 to 61174978 11 - TSS region transcription start site region 108328
Tssr108329 11 61174981 to 61175010 29 - TSS region transcription start site region 108329
Tssr108330 11 61175020 to 61175060 40 - TSS region transcription start site region 108330
Gm42080 11 61195699 to 61204089 8390 + lncRNA gene predicted gene, 42080
Rps13-ps5 11 61205720 to 61206175 455 - pseudogene ribosomal protein S13, pseudogene 5
Tssr108331 11 61206193 to 61206203 10 - TSS region transcription start site region 108331
Aldh3a1 11 61208510 to 61218418 9908 + protein coding gene aldehyde dehydrogenase family 3, subfamily A1
Tssr101946 11 61208734 to 61208747 13 + TSS region transcription start site region 101946
Cpgi3005 11 61212142 to 61212613 471 CpG island CpG island 3005
Aldh3a2 11 61224486 to 61267523 43037 - protein coding gene aldehyde dehydrogenase family 3, subfamily A2
Cpgi3006 11 61266761 to 61267653 892 CpG island CpG island 3006
Tssr108332 11 61267074 to 61267086 12 - TSS region transcription start site region 108332
Tssr108333 11 61267087 to 61267101 14 - TSS region transcription start site region 108333
Tssr108334 11 61267102 to 61267134 32 - TSS region transcription start site region 108334
Tssr108335 11 61267141 to 61267154 13 - TSS region transcription start site region 108335
Tssr108336 11 61267155 to 61267173 18 - TSS region transcription start site region 108336
Tssr108337 11 61267177 to 61267198 21 - TSS region transcription start site region 108337
Tssr108338 11 61267423 to 61267474 51 - TSS region transcription start site region 108338
Tssr108339 11 61296570 to 61296573 3 - TSS region transcription start site region 108339
Slc47a2 11 61301631 to 61342860 41229 - protein coding gene solute carrier family 47, member 2
Tssr108340 11 61331712 to 61331716 4 - TSS region transcription start site region 108340
Gm25929 11 61334761 to 61334867 106 + snRNA gene predicted gene, 25929
Cpgi3007 11 61342190 to 61343100 910 CpG island CpG island 3007
Tssr108341 11 61342794 to 61342803 9 - TSS region transcription start site region 108341
Tssr108342 11 61342809 to 61342814 5 - TSS region transcription start site region 108342
Tssr108343 11 61342821 to 61342868 47 - TSS region transcription start site region 108343
Slc47a1 11 61343401 to 61378345 34944 - protein coding gene solute carrier family 47, member 1
Gm18931 11 61356470 to 61357267 797 - pseudogene predicted gene, 18931
Tssr108344 11 61365045 to 61365050 5 - TSS region transcription start site region 108344
Tssr108345 11 61366603 to 61366614 11 - TSS region transcription start site region 108345
Tssr108346 11 61366688 to 61366713 25 - TSS region transcription start site region 108346
Cpgi3008 11 61377771 to 61378424 653 CpG island CpG island 3008
Tssr108347 11 61378052 to 61378085 33 - TSS region transcription start site region 108347
Tssr108348 11 61378089 to 61378092 3 - TSS region transcription start site region 108348
Tssr108349 11 61378103 to 61378108 5 - TSS region transcription start site region 108349
Tssr108350 11 61378306 to 61378347 41 - TSS region transcription start site region 108350
Gm42081 11 61391128 to 61397803 6675 - lncRNA gene predicted gene, 42081
Cpgi3009 11 61407620 to 61408839 1219 CpG island CpG island 3009
n-TWcca5 11 61407916 to 61407987 71 - tRNA gene nuclear encoded tRNA trytophan 5 (anticodon CCA)
Gm45605 11 61408018 to 61412286 4268 + lincRNA gene predicted gene 45605
Gm12271 11 61416402 to 61416815 413 - pseudogene predicted gene 12271
D11Mit317 11 61429688 to 61429806 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 317
Rnf112 11 61448442 to 61454131 5689 - protein coding gene ring finger protein 112
Tssr108351 11 61453516 to 61453553 37 - TSS region transcription start site region 108351
Tssr108352 11 61453857 to 61453866 9 - TSS region transcription start site region 108352
Tssr108353 11 61453890 to 61453910 20 - TSS region transcription start site region 108353
Tssr108354 11 61453921 to 61453982 61 - TSS region transcription start site region 108354
Tssr108355 11 61453992 to 61454019 27 - TSS region transcription start site region 108355
Tssr108356 11 61469387 to 61469392 5 - TSS region transcription start site region 108356
Tssr101947 11 61484885 to 61484910 25 + TSS region transcription start site region 101947
Mfap4 11 61485378 to 61488708 3330 + protein coding gene microfibrillar-associated protein 4
Tssr101948 11 61485438 to 61485452 14 + TSS region transcription start site region 101948
Tssr101949 11 61485703 to 61485741 38 + TSS region transcription start site region 101949
Tssr101950 11 61485747 to 61485776 29 + TSS region transcription start site region 101950
Tssr101951 11 61486025 to 61486039 14 + TSS region transcription start site region 101951
Tssr101952 11 61486107 to 61486130 23 + TSS region transcription start site region 101952
Tssr101953 11 61487071 to 61487113 42 + TSS region transcription start site region 101953
Tssr101954 11 61487744 to 61487756 12 + TSS region transcription start site region 101954
Tssr101955 11 61487896 to 61487909 13 + TSS region transcription start site region 101955
Tssr101956 11 61487952 to 61487963 11 + TSS region transcription start site region 101956
Tssr101957 11 61487997 to 61488011 14 + TSS region transcription start site region 101957
Tssr101958 11 61488016 to 61488031 15 + TSS region transcription start site region 101958
Tssr101959 11 61488043 to 61488071 28 + TSS region transcription start site region 101959
Tssr108357 11 61488115 to 61488130 15 - TSS region transcription start site region 108357
Tssr101960 11 61488146 to 61488164 18 + TSS region transcription start site region 101960
Tssr108358 11 61488218 to 61488277 59 - TSS region transcription start site region 108358
Tssr101961 11 61488286 to 61488305 19 + TSS region transcription start site region 101961
Tssr108359 11 61488291 to 61488317 26 - TSS region transcription start site region 108359
Tssr101962 11 61488337 to 61488349 12 + TSS region transcription start site region 101962
Tssr101963 11 61488385 to 61488420 35 + TSS region transcription start site region 101963
Tssr101964 11 61488448 to 61488460 12 + TSS region transcription start site region 101964
Tssr101965 11 61488482 to 61488515 33 + TSS region transcription start site region 101965
Tssr101966 11 61488669 to 61488673 4 + TSS region transcription start site region 101966
Mapk7 11 61488812 to 61494272 5460 - protein coding gene mitogen-activated protein kinase 7
Cpgi3010 11 61493473 to 61494911 1438 CpG island CpG island 3010
Tssr108360 11 61493881 to 61493890 9 - TSS region transcription start site region 108360
Tssr108361 11 61493969 to 61494046 77 - TSS region transcription start site region 108361
Tssr108362 11 61494173 to 61494261 88 - TSS region transcription start site region 108362
B9d1os 11 61504386 to 61505059 673 - antisense lncRNA gene B9 protein domain 1, opposite strand
Cpgi3011 11 61504566 to 61505339 773 CpG island CpG island 3011
Tssr101967 11 61505138 to 61505210 72 + TSS region transcription start site region 101967
B9d1 11 61505163 to 61512929 7766 + protein coding gene B9 protein domain 1
Tssr108363 11 61515493 to 61515497 4 - TSS region transcription start site region 108363
Epn2 11 61517249 to 61579687 62438 - protein coding gene epsin 2
Gm12272 11 61527755 to 61528577 822 + antisense lncRNA gene predicted gene 12272
D11Mit275 11 61573653 to 61573744 91 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 275
Cpgi3012 11 61578768 to 61580087 1319 CpG island CpG island 3012
Tssr101968 11 61578993 to 61579035 42 + TSS region transcription start site region 101968
Tssr108364 11 61579252 to 61579264 12 - TSS region transcription start site region 108364
Tssr108365 11 61579300 to 61579347 47 - TSS region transcription start site region 108365