Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 11:60696306-60897241

Filter by:
68 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scvln18 11 3300000 to 60800000 57500000 QTL sacral vertebrae length 2, 16 week
Cpgi2992 11 60699489 to 60700375 886 CpG island CpG island 2992
Tssr101906 11 60699684 to 60699710 26 + TSS region transcription start site region 101906
Tssr101907 11 60699718 to 60699750 32 + TSS region transcription start site region 101907
Llgl1 11 60699723 to 60714186 14463 + protein coding gene LLGL1 scribble cell polarity complex component
Tssr101908 11 60699758 to 60699845 87 + TSS region transcription start site region 101908
Tssr101909 11 60699850 to 60699897 47 + TSS region transcription start site region 101909
D11Jpk2 11 60703140 to 60703255 115 DNA segment DNA segment, Chr 11, Japan, Kominami 2
Tssr3514 11 60704110 to 60704111 1 + TSS region transcription start site region 3514
Tssr101910 11 60704680 to 60704716 36 + TSS region transcription start site region 101910
Tssr101911 11 60706747 to 60706756 9 + TSS region transcription start site region 101911
Tssr101912 11 60707271 to 60707287 16 + TSS region transcription start site region 101912
Flii 11 60714143 to 60727263 13120 - protein coding gene flightless I actin binding protein
Tssr108297 11 60722651 to 60722678 27 - TSS region transcription start site region 108297
Tssr108298 11 60723413 to 60723434 21 - TSS region transcription start site region 108298
Cpgi2993 11 60726580 to 60727913 1333 CpG island CpG island 2993
Tssr108299 11 60727196 to 60727251 55 - TSS region transcription start site region 108299
Tssr108300 11 60727252 to 60727255 3 - TSS region transcription start site region 108300
Tssr108301 11 60727257 to 60727268 11 - TSS region transcription start site region 108301
Tssr108302 11 60727270 to 60727271 1 - TSS region transcription start site region 108302
Cpgi2994 11 60728003 to 60728806 803 CpG island CpG island 2994
Mief2 11 60728398 to 60732951 4553 + protein coding gene mitochondrial elongation factor 2
Tssr101913 11 60728413 to 60728454 41 + TSS region transcription start site region 101913
Tssr101914 11 60728481 to 60728502 21 + TSS region transcription start site region 101914
Mir5100 11 60728663 to 60728726 63 + miRNA gene microRNA 5100
Gm23341 11 60735861 to 60735957 96 + snRNA gene predicted gene, 23341
Top3a 11 60740058 to 60777365 37307 - protein coding gene topoisomerase (DNA) III alpha
Gm3881 11 60765843 to 60769794 3951 - unclassified gene predicted gene 3881
Tssr101915 11 60775107 to 60775156 49 + TSS region transcription start site region 101915
Tssr101916 11 60775180 to 60775205 25 + TSS region transcription start site region 101916
Cpgi2995 11 60776680 to 60777982 1302 CpG island CpG island 2995
Tssr101917 11 60776872 to 60776890 18 + TSS region transcription start site region 101917
Tssr101918 11 60776907 to 60776948 41 + TSS region transcription start site region 101918
Tssr108303 11 60777214 to 60777225 11 - TSS region transcription start site region 108303
Tssr108304 11 60777226 to 60777239 13 - TSS region transcription start site region 108304
Tssr108305 11 60777241 to 60777284 43 - TSS region transcription start site region 108305
Tssr108306 11 60777435 to 60777460 25 - TSS region transcription start site region 108306
Smcr8 11 60777525 to 60788287 10762 + protein coding gene Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
Tssr101919 11 60777531 to 60777563 32 + TSS region transcription start site region 101919
Tssr101920 11 60777575 to 60777589 14 + TSS region transcription start site region 101920
Tssr101921 11 60778904 to 60778943 39 + TSS region transcription start site region 101921
Tssr101922 11 60786138 to 60786145 7 + TSS region transcription start site region 101922
Shmt1 11 60788897 to 60811265 22368 - protein coding gene serine hydroxymethyltransferase 1 (soluble)
1110055C04Rik 11 60796306 to 60797241 935 + lncRNA gene RIKEN cDNA 1110055C04 gene
Gm24945 11 60804578 to 60804703 125 + snoRNA gene predicted gene, 24945
Tssr108307 11 60808819 to 60808830 11 - TSS region transcription start site region 108307
Tssr108308 11 60808843 to 60808875 32 - TSS region transcription start site region 108308
Cpgi2996 11 60810890 to 60811383 493 CpG island CpG island 2996
Tssr108309 11 60811024 to 60811027 3 - TSS region transcription start site region 108309
Tssr108310 11 60811105 to 60811210 105 - TSS region transcription start site region 108310
Tssr108311 11 60811228 to 60811241 13 - TSS region transcription start site region 108311
Tssr108312 11 60811255 to 60811270 15 - TSS region transcription start site region 108312
Gm12611 11 60816375 to 60817747 1372 + pseudogene predicted gene 12611
Gm12618 11 60818796 to 60819278 482 - pseudogene predicted gene 12618
Tssr108313 11 60819316 to 60819317 1 - TSS region transcription start site region 108313
Cpgi2997 11 60830518 to 60831108 590 CpG island CpG island 2997
Dhrs7b 11 60830631 to 60858423 27792 + protein coding gene dehydrogenase/reductase (SDR family) member 7B
Tssr101923 11 60830658 to 60830686 28 + TSS region transcription start site region 101923
Tssr101924 11 60830690 to 60830730 40 + TSS region transcription start site region 101924
Tssr101925 11 60837837 to 60837866 29 + TSS region transcription start site region 101925
Tmem11 11 60864452 to 60879038 14586 - protein coding gene transmembrane protein 11
Cpgi2998 11 60878000 to 60879392 1392 CpG island CpG island 2998
Tssr101926 11 60878191 to 60878196 5 + TSS region transcription start site region 101926
Tssr101927 11 60878361 to 60878375 14 + TSS region transcription start site region 101927
Tssr108314 11 60878764 to 60878812 48 - TSS region transcription start site region 108314
Tssr101928 11 60878944 to 60878999 55 + TSS region transcription start site region 101928
Tssr108315 11 60879406 to 60879426 20 - TSS region transcription start site region 108315
Gm26534 11 60884200 to 60886385 2185 + lncRNA gene predicted gene, 26534