Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:60421717-60747049

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity2a 11 37877753 to 60511890 22634137 QTL immunity to S. typhimurium 2a
Del(11Cops3-Gid4)4Jrl 11 59817795 to 60445277 627482 complex/cluster/region deletion, Chr 11, James R Lupski 4
Del(11Cops3-Gid4)3Jrl 11 59817795 to 60445277 627482 cytogenetic marker deletion, Chr 11, James R Lupski 3
Gid4 11 60417145 to 60445277 28132 + protein coding gene GID complex subunit 4, VID24 homolog
Tssr101892 11 60444308 to 60444313 5 + TSS region transcription start site region 101892
Gm12268 11 60446743 to 60447184 441 + pseudogene predicted gene 12268
Gm12267 11 60449210 to 60449970 760 - pseudogene predicted gene 12267
Cpgi2985 11 60454416 to 60455049 633 CpG island CpG island 2985
Tssr101893 11 60454587 to 60454657 70 + TSS region transcription start site region 101893
Drg2 11 60454617 to 60468752 14135 + protein coding gene developmentally regulated GTP binding protein 2
Tssr101894 11 60468411 to 60468426 15 + TSS region transcription start site region 101894
Myo15 11 60469339 to 60528369 59030 + protein coding gene myosin XV
Tssr101895 11 60476286 to 60476301 15 + TSS region transcription start site region 101895
Cpgi2986 11 60476557 to 60477375 818 CpG island CpG island 2986
Cpgi2987 11 60477725 to 60478379 654 CpG island CpG island 2987
Cpgi2988 11 60478635 to 60479093 458 CpG island CpG island 2988
Cpgi2989 11 60496396 to 60496559 163 CpG island CpG island 2989
Cpgi2990 11 60509441 to 60510089 648 CpG island CpG island 2990
D11Mit26 11 60511700 to 60511890 190 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 26
Tssr101896 11 60536587 to 60536624 37 + TSS region transcription start site region 101896
Cpgi2991 11 60536885 to 60539302 2417 CpG island CpG island 2991
Tssr108294 11 60537142 to 60537162 20 - TSS region transcription start site region 108294
Tssr108295 11 60537307 to 60537337 30 - TSS region transcription start site region 108295
Tssr101897 11 60537661 to 60537738 77 + TSS region transcription start site region 101897
Alkbh5 11 60537683 to 60558512 20829 + protein coding gene alkB homolog 5, RNA demethylase
Tssr101898 11 60537962 to 60537984 22 + TSS region transcription start site region 101898
Tssr101899 11 60537989 to 60538074 85 + TSS region transcription start site region 101899
Tssr101900 11 60538104 to 60538116 12 + TSS region transcription start site region 101900
Tssr101901 11 60539724 to 60539729 5 + TSS region transcription start site region 101901
Tssr101902 11 60541370 to 60541374 4 + TSS region transcription start site region 101902
Tssr101903 11 60553746 to 60553777 31 + TSS region transcription start site region 101903
Tssr101904 11 60554945 to 60554960 15 + TSS region transcription start site region 101904
Tssr101905 11 60557894 to 60557903 9 + TSS region transcription start site region 101905
Gm12622 11 60560924 to 60561305 381 - pseudogene predicted gene 12622
Gm12628 11 60571623 to 60572210 587 - pseudogene predicted gene 12628
Gm26837 11 60573527 to 60633113 59586 + lincRNA gene predicted gene, 26837
Gm12623 11 60573567 to 60575549 1982 - pseudogene predicted gene 12623
Gm42078 11 60579802 to 60580980 1178 - protein coding gene predicted gene, 42078
Gm46257 11 60581717 to 60587049 5332 - protein coding gene predicted gene, 46257
Gm12621 11 60591721 to 60592102 381 - pseudogene predicted gene 12621
Gm12627 11 60600927 to 60601308 381 - pseudogene predicted gene 12627
Gm12613 11 60610136 to 60610517 381 - pseudogene predicted gene 12613
Gm12614 11 60619346 to 60619727 381 - pseudogene predicted gene 12614
Gm12615 11 60628582 to 60628963 381 - pseudogene predicted gene 12615
Gm12626 11 60631047 to 60633029 1982 - pseudogene predicted gene 12626
Gm12625 11 60641861 to 60642242 381 - pseudogene predicted gene 12625
Gm12619 11 60651070 to 60657857 6787 - pseudogene predicted gene 12619
Gm12624 11 60666684 to 60667065 381 - pseudogene predicted gene 12624
Gm12612 11 60669140 to 60671125 1985 - pseudogene predicted gene 12612
Gm12616 11 60679707 to 60680088 381 - pseudogene predicted gene 12616
Gm12620 11 60682179 to 60684164 1985 - pseudogene predicted gene 12620
Gm12617 11 60692695 to 60693075 380 - pseudogene predicted gene 12617
Tssr108296 11 60695875 to 60695890 15 - TSS region transcription start site region 108296
Cpgi2992 11 60699489 to 60700375 886 CpG island CpG island 2992
Tssr101906 11 60699684 to 60699710 26 + TSS region transcription start site region 101906
Tssr101907 11 60699718 to 60699750 32 + TSS region transcription start site region 101907
Llgl1 11 60699723 to 60714186 14463 + protein coding gene LLGL1 scribble cell polarity complex component
Tssr101908 11 60699758 to 60699845 87 + TSS region transcription start site region 101908
Tssr101909 11 60699850 to 60699897 47 + TSS region transcription start site region 101909
D11Jpk2 11 60703140 to 60703255 115 DNA segment DNA segment, Chr 11, Japan, Kominami 2
Tssr3514 11 60704110 to 60704111 1 + TSS region transcription start site region 3514
Tssr101910 11 60704680 to 60704716 36 + TSS region transcription start site region 101910
Tssr101911 11 60706747 to 60706756 9 + TSS region transcription start site region 101911
Tssr101912 11 60707271 to 60707287 16 + TSS region transcription start site region 101912
Flii 11 60714143 to 60727263 13120 - protein coding gene flightless I actin binding protein
Tssr108297 11 60722651 to 60722678 27 - TSS region transcription start site region 108297
Tssr108298 11 60723413 to 60723434 21 - TSS region transcription start site region 108298
Cpgi2993 11 60726580 to 60727913 1333 CpG island CpG island 2993
Tssr108299 11 60727196 to 60727251 55 - TSS region transcription start site region 108299
Tssr108300 11 60727252 to 60727255 3 - TSS region transcription start site region 108300
Tssr108301 11 60727257 to 60727268 11 - TSS region transcription start site region 108301
Tssr108302 11 60727270 to 60727271 1 - TSS region transcription start site region 108302
Cpgi2994 11 60728003 to 60728806 803 CpG island CpG island 2994
Mief2 11 60728398 to 60732951 4553 + protein coding gene mitochondrial elongation factor 2
Tssr101913 11 60728413 to 60728454 41 + TSS region transcription start site region 101913
Tssr101914 11 60728481 to 60728502 21 + TSS region transcription start site region 101914
Mir5100 11 60728663 to 60728726 63 + miRNA gene microRNA 5100
Gm23341 11 60735861 to 60735957 96 + snRNA gene predicted gene, 23341
Top3a 11 60740058 to 60777365 37307 - protein coding gene topoisomerase (DNA) III alpha