Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:60400890-61221383

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity2a 11 37877753 to 60511890 22634137 QTL immunity to S. typhimurium 2a
Del(11Cops3-Gid4)4Jrl 11 59817795 to 60445277 627482 complex/cluster/region deletion, Chr 11, James R Lupski 4
Del(11Cops3-Gid4)3Jrl 11 59817795 to 60445277 627482 cytogenetic marker deletion, Chr 11, James R Lupski 3
Atpaf2 11 60400626 to 60418457 17831 - protein coding gene ATP synthase mitochondrial F1 complex assembly factor 2
Cpgi2984 11 60416616 to 60418265 1649 CpG island CpG island 2984
Tssr108291 11 60417022 to 60417056 34 - TSS region transcription start site region 108291
Tssr101885 11 60417128 to 60417133 5 + TSS region transcription start site region 101885
Gid4 11 60417145 to 60445277 28132 + protein coding gene GID complex subunit 4, VID24 homolog
Tssr101886 11 60417152 to 60417181 29 + TSS region transcription start site region 101886
Tssr101887 11 60417188 to 60417195 7 + TSS region transcription start site region 101887
Tssr101888 11 60417238 to 60417301 63 + TSS region transcription start site region 101888
Tssr101889 11 60417304 to 60417330 26 + TSS region transcription start site region 101889
Tssr101890 11 60417542 to 60417600 58 + TSS region transcription start site region 101890
Tssr101891 11 60417607 to 60417625 18 + TSS region transcription start site region 101891
Tssr108292 11 60417928 to 60417970 42 - TSS region transcription start site region 108292
Tssr108293 11 60418582 to 60418608 26 - TSS region transcription start site region 108293
Tssr101892 11 60444308 to 60444313 5 + TSS region transcription start site region 101892
Gm12268 11 60446743 to 60447184 441 + pseudogene predicted gene 12268
Gm12267 11 60449210 to 60449970 760 - pseudogene predicted gene 12267
Cpgi2985 11 60454416 to 60455049 633 CpG island CpG island 2985
Tssr101893 11 60454587 to 60454657 70 + TSS region transcription start site region 101893
Drg2 11 60454617 to 60468752 14135 + protein coding gene developmentally regulated GTP binding protein 2
Tssr101894 11 60468411 to 60468426 15 + TSS region transcription start site region 101894
Myo15 11 60469339 to 60528369 59030 + protein coding gene myosin XV
Tssr101895 11 60476286 to 60476301 15 + TSS region transcription start site region 101895
Cpgi2986 11 60476557 to 60477375 818 CpG island CpG island 2986
Cpgi2987 11 60477725 to 60478379 654 CpG island CpG island 2987
Cpgi2988 11 60478635 to 60479093 458 CpG island CpG island 2988
Cpgi2989 11 60496396 to 60496559 163 CpG island CpG island 2989
Cpgi2990 11 60509441 to 60510089 648 CpG island CpG island 2990
D11Mit26 11 60511700 to 60511890 190 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 26
Tssr101896 11 60536587 to 60536624 37 + TSS region transcription start site region 101896
Cpgi2991 11 60536885 to 60539302 2417 CpG island CpG island 2991
Tssr108294 11 60537142 to 60537162 20 - TSS region transcription start site region 108294
Tssr108295 11 60537307 to 60537337 30 - TSS region transcription start site region 108295
Tssr101897 11 60537661 to 60537738 77 + TSS region transcription start site region 101897
Alkbh5 11 60537683 to 60558512 20829 + protein coding gene alkB homolog 5, RNA demethylase
Tssr101898 11 60537962 to 60537984 22 + TSS region transcription start site region 101898
Tssr101899 11 60537989 to 60538074 85 + TSS region transcription start site region 101899
Tssr101900 11 60538104 to 60538116 12 + TSS region transcription start site region 101900
Tssr101901 11 60539724 to 60539729 5 + TSS region transcription start site region 101901
Tssr101902 11 60541370 to 60541374 4 + TSS region transcription start site region 101902
Tssr101903 11 60553746 to 60553777 31 + TSS region transcription start site region 101903
Tssr101904 11 60554945 to 60554960 15 + TSS region transcription start site region 101904
Tssr101905 11 60557894 to 60557903 9 + TSS region transcription start site region 101905
Gm12622 11 60560924 to 60561305 381 - pseudogene predicted gene 12622
Gm12628 11 60571623 to 60572210 587 - pseudogene predicted gene 12628
Gm26837 11 60573527 to 60633113 59586 + lincRNA gene predicted gene, 26837
Gm12623 11 60573567 to 60575549 1982 - pseudogene predicted gene 12623
Gm42078 11 60579802 to 60580980 1178 - protein coding gene predicted gene, 42078
Gm46257 11 60581717 to 60587049 5332 - protein coding gene predicted gene, 46257
Gm12621 11 60591721 to 60592102 381 - pseudogene predicted gene 12621
Gm12627 11 60600927 to 60601308 381 - pseudogene predicted gene 12627
Gm12613 11 60610136 to 60610517 381 - pseudogene predicted gene 12613
Gm12614 11 60619346 to 60619727 381 - pseudogene predicted gene 12614
Gm12615 11 60628582 to 60628963 381 - pseudogene predicted gene 12615
Gm12626 11 60631047 to 60633029 1982 - pseudogene predicted gene 12626
Gm12625 11 60641861 to 60642242 381 - pseudogene predicted gene 12625
Gm12619 11 60651070 to 60657857 6787 - pseudogene predicted gene 12619
Gm12624 11 60666684 to 60667065 381 - pseudogene predicted gene 12624
Gm12612 11 60669140 to 60671125 1985 - pseudogene predicted gene 12612
Gm12616 11 60679707 to 60680088 381 - pseudogene predicted gene 12616
Gm12620 11 60682179 to 60684164 1985 - pseudogene predicted gene 12620
Gm12617 11 60692695 to 60693075 380 - pseudogene predicted gene 12617
Tssr108296 11 60695875 to 60695890 15 - TSS region transcription start site region 108296
Cpgi2992 11 60699489 to 60700375 886 CpG island CpG island 2992
Tssr101906 11 60699684 to 60699710 26 + TSS region transcription start site region 101906
Tssr101907 11 60699718 to 60699750 32 + TSS region transcription start site region 101907
Llgl1 11 60699723 to 60714186 14463 + protein coding gene LLGL1 scribble cell polarity complex component
Tssr101908 11 60699758 to 60699845 87 + TSS region transcription start site region 101908
Tssr101909 11 60699850 to 60699897 47 + TSS region transcription start site region 101909
D11Jpk2 11 60703140 to 60703255 115 DNA segment DNA segment, Chr 11, Japan, Kominami 2
Tssr3514 11 60704110 to 60704111 1 + TSS region transcription start site region 3514
Tssr101910 11 60704680 to 60704716 36 + TSS region transcription start site region 101910
Tssr101911 11 60706747 to 60706756 9 + TSS region transcription start site region 101911
Tssr101912 11 60707271 to 60707287 16 + TSS region transcription start site region 101912
Flii 11 60714143 to 60727263 13120 - protein coding gene flightless I actin binding protein
Tssr108297 11 60722651 to 60722678 27 - TSS region transcription start site region 108297
Tssr108298 11 60723413 to 60723434 21 - TSS region transcription start site region 108298
Cpgi2993 11 60726580 to 60727913 1333 CpG island CpG island 2993
Tssr108299 11 60727196 to 60727251 55 - TSS region transcription start site region 108299
Tssr108300 11 60727252 to 60727255 3 - TSS region transcription start site region 108300
Tssr108301 11 60727257 to 60727268 11 - TSS region transcription start site region 108301
Tssr108302 11 60727270 to 60727271 1 - TSS region transcription start site region 108302
Cpgi2994 11 60728003 to 60728806 803 CpG island CpG island 2994
Mief2 11 60728398 to 60732951 4553 + protein coding gene mitochondrial elongation factor 2
Tssr101913 11 60728413 to 60728454 41 + TSS region transcription start site region 101913
Tssr101914 11 60728481 to 60728502 21 + TSS region transcription start site region 101914
Mir5100 11 60728663 to 60728726 63 + miRNA gene microRNA 5100
Gm23341 11 60735861 to 60735957 96 + snRNA gene predicted gene, 23341
Top3a 11 60740058 to 60777365 37307 - protein coding gene topoisomerase (DNA) III alpha
Gm3881 11 60765842 to 60769793 3951 unclassified gene predicted gene 3881
Tssr101915 11 60775107 to 60775156 49 + TSS region transcription start site region 101915
Tssr101916 11 60775180 to 60775205 25 + TSS region transcription start site region 101916
Cpgi2995 11 60776680 to 60777982 1302 CpG island CpG island 2995
Tssr101917 11 60776872 to 60776890 18 + TSS region transcription start site region 101917
Tssr101918 11 60776907 to 60776948 41 + TSS region transcription start site region 101918
Tssr108303 11 60777214 to 60777225 11 - TSS region transcription start site region 108303
Tssr108304 11 60777226 to 60777239 13 - TSS region transcription start site region 108304
Tssr108305 11 60777241 to 60777284 43 - TSS region transcription start site region 108305
Tssr108306 11 60777435 to 60777460 25 - TSS region transcription start site region 108306
Smcr8 11 60777525 to 60788287 10762 + protein coding gene Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
Tssr101919 11 60777531 to 60777563 32 + TSS region transcription start site region 101919
Tssr101920 11 60777575 to 60777589 14 + TSS region transcription start site region 101920
Tssr101921 11 60778904 to 60778943 39 + TSS region transcription start site region 101921
Tssr101922 11 60786138 to 60786145 7 + TSS region transcription start site region 101922
Shmt1 11 60788886 to 60811265 22379 - protein coding gene serine hydroxymethyltransferase 1 (soluble)
1110055C04Rik 11 60796305 to 60797240 935 unclassified gene RIKEN cDNA 1110055C04 gene
Gm24945 11 60804578 to 60804703 125 + snoRNA gene predicted gene, 24945
Tssr108307 11 60808819 to 60808830 11 - TSS region transcription start site region 108307
Tssr108308 11 60808843 to 60808875 32 - TSS region transcription start site region 108308
Cpgi2996 11 60810890 to 60811383 493 CpG island CpG island 2996
Tssr108309 11 60811024 to 60811027 3 - TSS region transcription start site region 108309
Tssr108310 11 60811105 to 60811210 105 - TSS region transcription start site region 108310
Tssr108311 11 60811228 to 60811241 13 - TSS region transcription start site region 108311
Tssr108312 11 60811255 to 60811270 15 - TSS region transcription start site region 108312
Gm12611 11 60816375 to 60817747 1372 + pseudogene predicted gene 12611
Gm12618 11 60818796 to 60819278 482 - pseudogene predicted gene 12618
Tssr108313 11 60819316 to 60819317 1 - TSS region transcription start site region 108313
Cpgi2997 11 60830518 to 60831108 590 CpG island CpG island 2997
Dhrs7b 11 60830631 to 60858423 27792 + protein coding gene dehydrogenase/reductase (SDR family) member 7B
Tssr101923 11 60830658 to 60830686 28 + TSS region transcription start site region 101923
Tssr101924 11 60830690 to 60830730 40 + TSS region transcription start site region 101924
Tssr101925 11 60837837 to 60837866 29 + TSS region transcription start site region 101925
Tmem11 11 60864452 to 60879038 14586 - protein coding gene transmembrane protein 11
Cpgi2998 11 60878000 to 60879392 1392 CpG island CpG island 2998
Tssr101926 11 60878191 to 60878196 5 + TSS region transcription start site region 101926
Tssr101927 11 60878361 to 60878375 14 + TSS region transcription start site region 101927
Tssr108314 11 60878764 to 60878812 48 - TSS region transcription start site region 108314
Tssr101928 11 60878944 to 60878999 55 + TSS region transcription start site region 101928
Tssr108315 11 60879406 to 60879426 20 - TSS region transcription start site region 108315
Gm26534 11 60884200 to 60886385 2185 + lincRNA gene predicted gene, 26534
Cpgi2999 11 60899278 to 60899436 158 CpG island CpG island 2999
Natd1 11 60902246 to 60913792 11546 - protein coding gene N-acetyltransferase domain containing 1
Cpgi3000 11 60913073 to 60914233 1160 CpG island CpG island 3000
Tssr108316 11 60913732 to 60913751 19 - TSS region transcription start site region 108316
Tssr108317 11 60913757 to 60913771 14 - TSS region transcription start site region 108317
Tssr108318 11 60913775 to 60913816 41 - TSS region transcription start site region 108318
Gm39830 11 60913917 to 60917697 3780 + lncRNA gene predicted gene, 39830
Map2k3os 11 60920941 to 60931867 10926 - antisense lncRNA gene mitogen-activated protein kinase kinase 3, opposite strand
Tssr101929 11 60930939 to 60930960 21 + TSS region transcription start site region 101929
Tssr101930 11 60931143 to 60931167 24 + TSS region transcription start site region 101930
Cpgi3001 11 60931296 to 60932601 1305 CpG island CpG island 3001
Tssr108319 11 60931680 to 60931701 21 - TSS region transcription start site region 108319
Tssr3515 11 60931802 to 60931816 14 - TSS region transcription start site region 3515
Tssr108320 11 60931826 to 60931853 27 - TSS region transcription start site region 108320
Tssr108321 11 60931858 to 60931903 45 - TSS region transcription start site region 108321
Tssr101931 11 60931998 to 60932038 40 + TSS region transcription start site region 101931
Tssr101932 11 60932045 to 60932123 78 + TSS region transcription start site region 101932
Map2k3 11 60932057 to 60952803 20746 + protein coding gene mitogen-activated protein kinase kinase 3
Tssr108322 11 60932941 to 60932985 44 - TSS region transcription start site region 108322
Tssr108323 11 60935322 to 60935339 17 - TSS region transcription start site region 108323
Tssr108324 11 60935352 to 60935370 18 - TSS region transcription start site region 108324
Tssr101933 11 60935619 to 60935631 12 + TSS region transcription start site region 101933
Tssr101934 11 60941658 to 60941669 11 + TSS region transcription start site region 101934
Tssr101935 11 60945236 to 60945241 5 + TSS region transcription start site region 101935
Gm35681 11 60979009 to 60993091 14082 + lncRNA gene predicted gene, 35681
Cpgi3002 11 61021738 to 61023577 1839 CpG island CpG island 3002
Tssr101936 11 61022123 to 61022161 38 + TSS region transcription start site region 101936
Tssr101937 11 61022268 to 61022312 44 + TSS region transcription start site region 101937
Tssr101938 11 61022332 to 61022343 11 + TSS region transcription start site region 101938
Tssr101939 11 61022560 to 61022570 10 + TSS region transcription start site region 101939
Kcnj12 11 61022564 to 61071131 48567 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 12
Tssr101940 11 61022580 to 61022609 29 + TSS region transcription start site region 101940
Gm46283 11 61048155 to 61065482 17327 - lncRNA gene predicted gene, 46283
Tssr101941 11 61065798 to 61065816 18 + TSS region transcription start site region 101941
Tssr101942 11 61126747 to 61126762 15 + TSS region transcription start site region 101942
Tnfrsf13b 11 61126755 to 61149372 22617 + protein coding gene tumor necrosis factor receptor superfamily, member 13b
Gm12269 11 61130591 to 61131307 716 - pseudogene predicted gene 12269
Tssr101943 11 61142457 to 61142471 14 + TSS region transcription start site region 101943
Tssr101944 11 61142477 to 61142507 30 + TSS region transcription start site region 101944
Tssr101945 11 61142688 to 61142696 8 + TSS region transcription start site region 101945
Cpgi3003 11 61146972 to 61147860 888 CpG island CpG island 3003
Usp22 11 61151785 to 61175055 23270 - protein coding gene ubiquitin specific peptidase 22
Tssr108325 11 61153136 to 61153144 8 - TSS region transcription start site region 108325
Tssr108326 11 61159328 to 61159361 33 - TSS region transcription start site region 108326
Cpgi3004 11 61174110 to 61175594 1484 CpG island CpG island 3004
Tssr108327 11 61174958 to 61174961 3 - TSS region transcription start site region 108327
Tssr108328 11 61174967 to 61174978 11 - TSS region transcription start site region 108328
Tssr108329 11 61174981 to 61175010 29 - TSS region transcription start site region 108329
Tssr108330 11 61175020 to 61175060 40 - TSS region transcription start site region 108330
Gm42080 11 61195699 to 61204089 8390 + lncRNA gene predicted gene, 42080
Rps13-ps5 11 61205720 to 61206175 455 - pseudogene ribosomal protein S13, pseudogene 5
Tssr108331 11 61206193 to 61206203 10 - TSS region transcription start site region 108331
Aldh3a1 11 61208510 to 61218418 9908 + protein coding gene aldehyde dehydrogenase family 3, subfamily A1
Tssr101946 11 61208734 to 61208747 13 + TSS region transcription start site region 101946
Cpgi3005 11 61212142 to 61212613 471 CpG island CpG island 3005