Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:60281743-60612184

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity2a 11 37877753 to 60511890 22634137 QTL immunity to S. typhimurium 2a
Del(11Cops3-Gid4)4Jrl 11 59817795 to 60445277 627482 complex/cluster/region deletion, Chr 11, James R Lupski 4
Del(11Cops3-Gid4)3Jrl 11 59817795 to 60445277 627482 cytogenetic marker deletion, Chr 11, James R Lupski 3
Tom1l2 11 60226714 to 60352905 126191 - protein coding gene target of myb1-like 2 (chicken)
Tssr108288 11 60296590 to 60296624 34 - TSS region transcription start site region 108288
Gm27711 11 60302707 to 60302824 117 - miRNA gene predicted gene, 27711
Gm12266 11 60343245 to 60344206 961 + pseudogene predicted gene 12266
Cpgi2983 11 60352479 to 60353380 901 CpG island CpG island 2983
Tssr108289 11 60352869 to 60352896 27 - TSS region transcription start site region 108289
Tssr108290 11 60352927 to 60352932 5 - TSS region transcription start site region 108290
Tssr101882 11 60353076 to 60353090 14 + TSS region transcription start site region 101882
Tssr101883 11 60353324 to 60353408 84 + TSS region transcription start site region 101883
Drc3 11 60353329 to 60394341 41012 + protein coding gene dynein regulatory complex subunit 3
Tssr101884 11 60388190 to 60388213 23 + TSS region transcription start site region 101884
Atpaf2 11 60400626 to 60418457 17831 - protein coding gene ATP synthase mitochondrial F1 complex assembly factor 2
Cpgi2984 11 60416616 to 60418265 1649 CpG island CpG island 2984
Tssr108291 11 60417022 to 60417056 34 - TSS region transcription start site region 108291
Tssr101885 11 60417128 to 60417133 5 + TSS region transcription start site region 101885
Gid4 11 60417145 to 60445277 28132 + protein coding gene GID complex subunit 4, VID24 homolog
Tssr101886 11 60417152 to 60417181 29 + TSS region transcription start site region 101886
Tssr101887 11 60417188 to 60417195 7 + TSS region transcription start site region 101887
Tssr101888 11 60417238 to 60417301 63 + TSS region transcription start site region 101888
Tssr101889 11 60417304 to 60417330 26 + TSS region transcription start site region 101889
Tssr101890 11 60417542 to 60417600 58 + TSS region transcription start site region 101890
Tssr101891 11 60417607 to 60417625 18 + TSS region transcription start site region 101891
Tssr108292 11 60417928 to 60417970 42 - TSS region transcription start site region 108292
Tssr108293 11 60418582 to 60418608 26 - TSS region transcription start site region 108293
Tssr101892 11 60444308 to 60444313 5 + TSS region transcription start site region 101892
Gm12268 11 60446743 to 60447184 441 + pseudogene predicted gene 12268
Gm12267 11 60449210 to 60449970 760 - pseudogene predicted gene 12267
Cpgi2985 11 60454416 to 60455049 633 CpG island CpG island 2985
Tssr101893 11 60454587 to 60454657 70 + TSS region transcription start site region 101893
Drg2 11 60454617 to 60468752 14135 + protein coding gene developmentally regulated GTP binding protein 2
Tssr101894 11 60468411 to 60468426 15 + TSS region transcription start site region 101894
Myo15 11 60469339 to 60528369 59030 + protein coding gene myosin XV
Tssr101895 11 60476286 to 60476301 15 + TSS region transcription start site region 101895
Cpgi2986 11 60476557 to 60477375 818 CpG island CpG island 2986
Cpgi2987 11 60477725 to 60478379 654 CpG island CpG island 2987
Cpgi2988 11 60478635 to 60479093 458 CpG island CpG island 2988
Cpgi2989 11 60496396 to 60496559 163 CpG island CpG island 2989
Cpgi2990 11 60509441 to 60510089 648 CpG island CpG island 2990
D11Mit26 11 60511700 to 60511890 190 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 26
Tssr101896 11 60536587 to 60536624 37 + TSS region transcription start site region 101896
Cpgi2991 11 60536885 to 60539302 2417 CpG island CpG island 2991
Tssr108294 11 60537142 to 60537162 20 - TSS region transcription start site region 108294
Tssr108295 11 60537307 to 60537337 30 - TSS region transcription start site region 108295
Tssr101897 11 60537661 to 60537738 77 + TSS region transcription start site region 101897
Alkbh5 11 60537683 to 60558512 20829 + protein coding gene alkB homolog 5, RNA demethylase
Tssr101898 11 60537962 to 60537984 22 + TSS region transcription start site region 101898
Tssr101899 11 60537989 to 60538074 85 + TSS region transcription start site region 101899
Tssr101900 11 60538104 to 60538116 12 + TSS region transcription start site region 101900
Tssr101901 11 60539724 to 60539729 5 + TSS region transcription start site region 101901
Tssr101902 11 60541370 to 60541374 4 + TSS region transcription start site region 101902
Tssr101903 11 60553746 to 60553777 31 + TSS region transcription start site region 101903
Tssr101904 11 60554945 to 60554960 15 + TSS region transcription start site region 101904
Tssr101905 11 60557894 to 60557903 9 + TSS region transcription start site region 101905
Gm12622 11 60560924 to 60561305 381 - pseudogene predicted gene 12622
Gm12628 11 60571623 to 60572210 587 - pseudogene predicted gene 12628
Gm26837 11 60573527 to 60633113 59586 + lincRNA gene predicted gene, 26837
Gm12623 11 60573567 to 60575549 1982 - pseudogene predicted gene 12623
Gm42078 11 60579802 to 60580980 1178 - protein coding gene predicted gene, 42078
Gm46257 11 60581717 to 60587049 5332 - protein coding gene predicted gene, 46257
Gm12621 11 60591721 to 60592102 381 - pseudogene predicted gene 12621
Gm12627 11 60600927 to 60601308 381 - pseudogene predicted gene 12627
Gm12613 11 60610136 to 60610517 381 - pseudogene predicted gene 12613