Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:6027361-6457362

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Camk2b 11 5969642 to 6066125 96483 - protein coding gene calcium/calmodulin-dependent protein kinase II, beta
Tssr106680 11 6029043 to 6029052 9 - TSS region transcription start site region 106680
Tssr106681 11 6029216 to 6029249 33 - TSS region transcription start site region 106681
Cpgi2550 11 6064073 to 6064428 355 CpG island CpG island 2550
Cpgi2551 11 6064535 to 6066517 1982 CpG island CpG island 2551
Tssr106682 11 6065539 to 6065635 96 - TSS region transcription start site region 106682
Tssr106683 11 6065637 to 6065663 26 - TSS region transcription start site region 106683
Tssr106684 11 6065671 to 6065688 17 - TSS region transcription start site region 106684
Tssr106685 11 6065697 to 6065728 31 - TSS region transcription start site region 106685
Tssr106686 11 6065737 to 6065755 18 - TSS region transcription start site region 106686
Tssr106687 11 6065768 to 6065779 11 - TSS region transcription start site region 106687
Tssr106688 11 6065890 to 6065911 21 - TSS region transcription start site region 106688
Tssr106689 11 6066110 to 6066120 10 - TSS region transcription start site region 106689
Tssr106690 11 6066121 to 6066137 16 - TSS region transcription start site region 106690
Tssr106691 11 6066354 to 6066365 11 - TSS region transcription start site region 106691
Tssr106692 11 6066371 to 6066384 13 - TSS region transcription start site region 106692
Tssr106693 11 6066396 to 6066411 15 - TSS region transcription start site region 106693
Cpgi2552 11 6068271 to 6068460 189 CpG island CpG island 2552
Gm46269 11 6084679 to 6088719 4040 - lncRNA gene predicted gene, 46269
Nudcd3 11 6105691 to 6200415 94724 - protein coding gene NudC domain containing 3
Tssr106694 11 6159861 to 6159885 24 - TSS region transcription start site region 106694
Rps15a-ps6 11 6172644 to 6173036 392 - pseudogene ribosomal protein S15A, pseudogene 6
Tssr106695 11 6173064 to 6173066 2 - TSS region transcription start site region 106695
Gm11969 11 6182679 to 6183034 355 - pseudogene predicted gene 11969
Cpgi2553 11 6199647 to 6200530 883 CpG island CpG island 2553
Tssr106696 11 6199993 to 6200045 52 - TSS region transcription start site region 106696
A730071L15Rik 11 6200029 to 6201643 1614 + protein coding gene RIKEN cDNA A730071L15Rik gene
Tssr106697 11 6200145 to 6200210 65 - TSS region transcription start site region 106697
Tssr106698 11 6200411 to 6200446 35 - TSS region transcription start site region 106698
Npc1l1 11 6211013 to 6230143 19130 - protein coding gene NPC1 like intracellular cholesterol transporter 1
Tssr106699 11 6213743 to 6213752 9 - TSS region transcription start site region 106699
Tssr106700 11 6213873 to 6213914 41 - TSS region transcription start site region 106700
Tssr106701 11 6222239 to 6222283 44 - TSS region transcription start site region 106701
Tssr106702 11 6228413 to 6228449 36 - TSS region transcription start site region 106702
Tssr106703 11 6229083 to 6229102 19 - TSS region transcription start site region 106703
Tssr106704 11 6229261 to 6229272 11 - TSS region transcription start site region 106704
Tssr106705 11 6230127 to 6230160 33 - TSS region transcription start site region 106705
Tssr106706 11 6230174 to 6230242 68 - TSS region transcription start site region 106706
Tssr100218 11 6230329 to 6230339 10 + TSS region transcription start site region 100218
Tssr100219 11 6242361 to 6242362 1 + TSS region transcription start site region 100219
Gm11401 11 6242378 to 6242721 343 + pseudogene predicted gene 11401
Ddx56 11 6258919 to 6267772 8853 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Cpgi2554 11 6267277 to 6268091 814 CpG island CpG island 2554
Tssr106707 11 6267718 to 6267755 37 - TSS region transcription start site region 106707
Tmed4 11 6270714 to 6274837 4123 - protein coding gene transmembrane p24 trafficking protein 4
Tssr106708 11 6271640 to 6271654 14 - TSS region transcription start site region 106708
n-R5s67 11 6273311 to 6273424 113 + rRNA gene nuclear encoded rRNA 5S 67
Tssr100220 11 6273750 to 6273782 32 + TSS region transcription start site region 100220
Cpgi2555 11 6273939 to 6275168 1229 CpG island CpG island 2555
Tssr106709 11 6274440 to 6274459 19 - TSS region transcription start site region 106709
Tssr106710 11 6274818 to 6274829 11 - TSS region transcription start site region 106710
Tssr106711 11 6274830 to 6274886 56 - TSS region transcription start site region 106711
Cpgi2556 11 6291262 to 6292595 1333 CpG island CpG island 2556
Gm46270 11 6291531 to 6292269 738 - protein coding gene predicted gene, 46270
Tssr100221 11 6291607 to 6291655 48 + TSS region transcription start site region 100221
Ogdh 11 6291633 to 6356642 65009 + protein coding gene oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
Tssr100222 11 6291660 to 6291687 27 + TSS region transcription start site region 100222
Tssr100223 11 6291964 to 6291997 33 + TSS region transcription start site region 100223
Tssr100224 11 6292034 to 6292050 16 + TSS region transcription start site region 100224
Tssr100225 11 6292053 to 6292067 14 + TSS region transcription start site region 100225
Tssr100226 11 6292084 to 6292111 27 + TSS region transcription start site region 100226
Tssr100227 11 6292120 to 6292203 83 + TSS region transcription start site region 100227
Tssr106712 11 6292131 to 6292149 18 - TSS region transcription start site region 106712
Tssr106713 11 6292154 to 6292167 13 - TSS region transcription start site region 106713
Tssr100228 11 6292279 to 6292331 52 + TSS region transcription start site region 100228
Tssr100229 11 6292555 to 6292580 25 + TSS region transcription start site region 100229
Tssr100230 11 6292630 to 6292650 20 + TSS region transcription start site region 100230
Tssr100231 11 6292652 to 6292663 11 + TSS region transcription start site region 100231
Tssr100232 11 6292668 to 6292692 24 + TSS region transcription start site region 100232
Tssr100233 11 6292854 to 6292870 16 + TSS region transcription start site region 100233
Tssr100234 11 6292876 to 6292898 22 + TSS region transcription start site region 100234
Tssr100235 11 6301540 to 6301546 6 + TSS region transcription start site region 100235
Gm45933 11 6307391 to 6307834 443 - pseudogene predicted gene, 45933
Tssr100236 11 6320595 to 6320599 4 + TSS region transcription start site region 100236
Tssr100237 11 6334448 to 6334452 4 + TSS region transcription start site region 100237
Tssr100238 11 6346533 to 6346558 25 + TSS region transcription start site region 100238
Tssr100239 11 6366140 to 6366153 13 + TSS region transcription start site region 100239
Tssr100240 11 6366236 to 6366244 8 + TSS region transcription start site region 100240
Tssr106714 11 6367111 to 6367161 50 - TSS region transcription start site region 106714
Cpgi2557 11 6388811 to 6390072 1261 CpG island CpG island 2557
Tssr100241 11 6389061 to 6389080 19 + TSS region transcription start site region 100241
Zmiz2 11 6389074 to 6406158 17084 + protein coding gene zinc finger, MIZ-type containing 2
Tssr100242 11 6389085 to 6389106 21 + TSS region transcription start site region 100242
Tssr100243 11 6389117 to 6389137 20 + TSS region transcription start site region 100243
Tssr100244 11 6389330 to 6389397 67 + TSS region transcription start site region 100244
Tssr100245 11 6389428 to 6389435 7 + TSS region transcription start site region 100245
Tssr100246 11 6389442 to 6389453 11 + TSS region transcription start site region 100246
Tssr100247 11 6389553 to 6389573 20 + TSS region transcription start site region 100247
Tssr100248 11 6389576 to 6389596 20 + TSS region transcription start site region 100248
Mir7651 11 6401630 to 6401693 63 + miRNA gene microRNA 7651
Tssr100249 11 6403868 to 6403881 13 + TSS region transcription start site region 100249
Cpgi2558 11 6415302 to 6416788 1486 CpG island CpG island 2558
Tssr106715 11 6415649 to 6415691 42 - TSS region transcription start site region 106715
Tssr100250 11 6415774 to 6415783 9 + TSS region transcription start site region 100250
Tssr100251 11 6415803 to 6415813 10 + TSS region transcription start site region 100251
Tssr100252 11 6415830 to 6415867 37 + TSS region transcription start site region 100252
Ppia 11 6415870 to 6419810 3940 + protein coding gene peptidylprolyl isomerase A
Tssr100253 11 6416227 to 6416232 5 + TSS region transcription start site region 100253
Tssr100254 11 6416258 to 6416317 59 + TSS region transcription start site region 100254
Tssr100255 11 6416329 to 6416345 16 + TSS region transcription start site region 100255
H2afv 11 6427229 to 6444443 17214 - protein coding gene H2A histone family, member V
Cpgi2559 11 6443931 to 6444793 862 CpG island CpG island 2559
Tssr106716 11 6444359 to 6444370 11 - TSS region transcription start site region 106716
Tssr106717 11 6444384 to 6444439 55 - TSS region transcription start site region 106717
Tssr100256 11 6446174 to 6446195 21 + TSS region transcription start site region 100256
Gm11970 11 6446218 to 6446537 319 + pseudogene predicted gene 11970
Gm11971 11 6453151 to 6453438 287 + pseudogene predicted gene 11971
Gm11972 11 6455517 to 6455905 388 - pseudogene predicted gene 11972