Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:60044957-60235025

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pemt 11 59970614 to 60046489 75875 - protein coding gene phosphatidylethanolamine N-methyltransferase
Cpgi2973 11 60046088 to 60046617 529 CpG island CpG island 2973
Tssr108271 11 60046478 to 60046532 54 - TSS region transcription start site region 108271
Tssr101872 11 60074433 to 60074434 1 + TSS region transcription start site region 101872
Cpgi2974 11 60088368 to 60088545 177 CpG island CpG island 2974
Gm27511 11 60099547 to 60099673 126 + unclassified non-coding RNA gene predicted gene, 27511
Tssr108272 11 60099973 to 60099993 20 - TSS region transcription start site region 108272
Tssr108273 11 60099999 to 60100019 20 - TSS region transcription start site region 108273
Cpgi2975 11 60104523 to 60106844 2321 CpG island CpG island 2975
Tssr101873 11 60104916 to 60104967 51 + TSS region transcription start site region 101873
Tssr101874 11 60104971 to 60105013 42 + TSS region transcription start site region 101874
Rai1 11 60105013 to 60199197 94184 + protein coding gene retinoic acid induced 1
Tssr101875 11 60105015 to 60105035 20 + TSS region transcription start site region 101875
Tssr101876 11 60105052 to 60105078 26 + TSS region transcription start site region 101876
Tssr101877 11 60105079 to 60105097 18 + TSS region transcription start site region 101877
Tssr108274 11 60106523 to 60106545 22 - TSS region transcription start site region 108274
4930412M03Rik 11 60112219 to 60115230 3011 - lincRNA gene RIKEN cDNA 4930412M03 gene
Cpgi2976 11 60114904 to 60115693 789 CpG island CpG island 2976
Tssr108275 11 60115226 to 60115237 11 - TSS region transcription start site region 108275
Cpgi2977 11 60139232 to 60140948 1716 CpG island CpG island 2977
Tssr101878 11 60139957 to 60140025 68 + TSS region transcription start site region 101878
Tssr101879 11 60140066 to 60140080 14 + TSS region transcription start site region 101879
Cpgi2978 11 60175339 to 60177557 2218 CpG island CpG island 2978
Tssr101880 11 60175857 to 60175887 30 + TSS region transcription start site region 101880
Tssr108276 11 60176613 to 60176660 47 - TSS region transcription start site region 108276
Srebf1 11 60199089 to 60222581 23492 - protein coding gene sterol regulatory element binding transcription factor 1
Tssr108277 11 60199419 to 60199453 34 - TSS region transcription start site region 108277
Cpgi2979 11 60199823 to 60200175 352 CpG island CpG island 2979
Mir6921 11 60200538 to 60200617 79 - miRNA gene microRNA 6921
Mir6922 11 60202262 to 60202327 65 - miRNA gene microRNA 6922
Cpgi2980 11 60210010 to 60211136 1126 CpG island CpG island 2980
Tssr108278 11 60210410 to 60210428 18 - TSS region transcription start site region 108278
Cpgi2981 11 60220234 to 60220894 660 CpG island CpG island 2981
Tssr108279 11 60220537 to 60220548 11 - TSS region transcription start site region 108279
Tssr108280 11 60220550 to 60220632 82 - TSS region transcription start site region 108280
Cpgi2982 11 60222526 to 60223243 717 CpG island CpG island 2982
Tssr108281 11 60222756 to 60222774 18 - TSS region transcription start site region 108281
Tssr108282 11 60222832 to 60222852 20 - TSS region transcription start site region 108282
Tssr108283 11 60222854 to 60222872 18 - TSS region transcription start site region 108283
Tom1l2 11 60226714 to 60352905 126191 - protein coding gene target of myb1-like 2 (chicken)
Tssr108284 11 60229766 to 60229780 14 - TSS region transcription start site region 108284