Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:59982832-60462852

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(11Cops3-Gid4)3Jrl 11 59817795 to 60445277 627482 cytogenetic marker deletion, Chr 11, James R Lupski 3
Del(11Cops3-Gid4)4Jrl 11 59817795 to 60445277 627482 complex/cluster/region deletion, Chr 11, James R Lupski 4
Pemt 11 59970614 to 60046489 75875 - protein coding gene phosphatidylethanolamine N-methyltransferase
Tssr108263 11 59983499 to 59983522 23 - TSS region transcription start site region 108263
Gm38498 11 60020769 to 60026954 6185 - lncRNA gene predicted gene, 38498
Tssr108264 11 60021218 to 60021231 13 - TSS region transcription start site region 108264
Tssr108265 11 60031828 to 60031837 9 - TSS region transcription start site region 108265
Tssr108266 11 60031847 to 60031869 22 - TSS region transcription start site region 108266
Tssr108267 11 60031874 to 60031891 17 - TSS region transcription start site region 108267
Tssr108268 11 60031902 to 60031914 12 - TSS region transcription start site region 108268
Tssr108269 11 60036863 to 60036914 51 - TSS region transcription start site region 108269
Tssr108270 11 60036917 to 60036992 75 - TSS region transcription start site region 108270
Cpgi2973 11 60046088 to 60046617 529 CpG island CpG island 2973
Tssr108271 11 60046478 to 60046532 54 - TSS region transcription start site region 108271
Tssr101872 11 60074433 to 60074434 1 + TSS region transcription start site region 101872
Cpgi2974 11 60088368 to 60088545 177 CpG island CpG island 2974
Gm27511 11 60099547 to 60099673 126 + unclassified non-coding RNA gene predicted gene, 27511
Tssr108272 11 60099973 to 60099993 20 - TSS region transcription start site region 108272
Tssr108273 11 60099999 to 60100019 20 - TSS region transcription start site region 108273
Cpgi2975 11 60104523 to 60106844 2321 CpG island CpG island 2975
Tssr101873 11 60104916 to 60104967 51 + TSS region transcription start site region 101873
Tssr101874 11 60104971 to 60105013 42 + TSS region transcription start site region 101874
Rai1 11 60105013 to 60199197 94184 + protein coding gene retinoic acid induced 1
Tssr101875 11 60105015 to 60105035 20 + TSS region transcription start site region 101875
Tssr101876 11 60105052 to 60105078 26 + TSS region transcription start site region 101876
Tssr101877 11 60105079 to 60105097 18 + TSS region transcription start site region 101877
Tssr108274 11 60106523 to 60106545 22 - TSS region transcription start site region 108274
4930412M03Rik 11 60112219 to 60115230 3011 - lincRNA gene RIKEN cDNA 4930412M03 gene
Cpgi2976 11 60114904 to 60115693 789 CpG island CpG island 2976
Tssr108275 11 60115226 to 60115237 11 - TSS region transcription start site region 108275
Cpgi2977 11 60139232 to 60140948 1716 CpG island CpG island 2977
Tssr101878 11 60139957 to 60140025 68 + TSS region transcription start site region 101878
Tssr101879 11 60140066 to 60140080 14 + TSS region transcription start site region 101879
Cpgi2978 11 60175339 to 60177557 2218 CpG island CpG island 2978
Tssr101880 11 60175857 to 60175887 30 + TSS region transcription start site region 101880
Tssr108276 11 60176613 to 60176660 47 - TSS region transcription start site region 108276
Srebf1 11 60199089 to 60222581 23492 - protein coding gene sterol regulatory element binding transcription factor 1
Tssr108277 11 60199419 to 60199453 34 - TSS region transcription start site region 108277
Cpgi2979 11 60199823 to 60200175 352 CpG island CpG island 2979
Mir6921 11 60200538 to 60200617 79 - miRNA gene microRNA 6921
Mir6922 11 60202262 to 60202327 65 - miRNA gene microRNA 6922
Cpgi2980 11 60210010 to 60211136 1126 CpG island CpG island 2980
Tssr108278 11 60210410 to 60210428 18 - TSS region transcription start site region 108278
Cpgi2981 11 60220234 to 60220894 660 CpG island CpG island 2981
Tssr108279 11 60220537 to 60220548 11 - TSS region transcription start site region 108279
Tssr108280 11 60220550 to 60220632 82 - TSS region transcription start site region 108280
Cpgi2982 11 60222526 to 60223243 717 CpG island CpG island 2982
Tssr108281 11 60222756 to 60222774 18 - TSS region transcription start site region 108281
Tssr108282 11 60222832 to 60222852 20 - TSS region transcription start site region 108282
Tssr108283 11 60222854 to 60222872 18 - TSS region transcription start site region 108283
Tom1l2 11 60226714 to 60352905 126191 - protein coding gene target of myb1-like 2 (chicken)
Tssr108284 11 60229766 to 60229780 14 - TSS region transcription start site region 108284
Tssr108285 11 60239725 to 60239742 17 - TSS region transcription start site region 108285
Tssr108286 11 60239979 to 60240002 23 - TSS region transcription start site region 108286
Tssr101881 11 60240727 to 60240739 12 + TSS region transcription start site region 101881
Gm12265 11 60240810 to 60241930 1120 + antisense lncRNA gene predicted gene 12265
Gm38501 11 60254661 to 60258543 3882 - lncRNA gene predicted gene, 38501
Tssr108287 11 60263382 to 60263393 11 - TSS region transcription start site region 108287
Tssr108288 11 60296590 to 60296624 34 - TSS region transcription start site region 108288
Gm27711 11 60302707 to 60302824 117 - miRNA gene predicted gene, 27711
Gm12266 11 60343245 to 60344206 961 + pseudogene predicted gene 12266
Cpgi2983 11 60352479 to 60353380 901 CpG island CpG island 2983
Tssr108289 11 60352869 to 60352896 27 - TSS region transcription start site region 108289
Tssr108290 11 60352927 to 60352932 5 - TSS region transcription start site region 108290
Tssr101882 11 60353076 to 60353090 14 + TSS region transcription start site region 101882
Tssr101883 11 60353324 to 60353408 84 + TSS region transcription start site region 101883
Drc3 11 60353329 to 60394341 41012 + protein coding gene dynein regulatory complex subunit 3
Tssr101884 11 60388190 to 60388213 23 + TSS region transcription start site region 101884
Atpaf2 11 60400626 to 60418457 17831 - protein coding gene ATP synthase mitochondrial F1 complex assembly factor 2
Cpgi2984 11 60416616 to 60418265 1649 CpG island CpG island 2984
Tssr108291 11 60417022 to 60417056 34 - TSS region transcription start site region 108291
Tssr101885 11 60417128 to 60417133 5 + TSS region transcription start site region 101885
Gid4 11 60417145 to 60445277 28132 + protein coding gene GID complex subunit 4, VID24 homolog
Tssr101886 11 60417152 to 60417181 29 + TSS region transcription start site region 101886
Tssr101887 11 60417188 to 60417195 7 + TSS region transcription start site region 101887
Tssr101888 11 60417238 to 60417301 63 + TSS region transcription start site region 101888
Tssr101889 11 60417304 to 60417330 26 + TSS region transcription start site region 101889
Tssr101890 11 60417542 to 60417600 58 + TSS region transcription start site region 101890
Tssr101891 11 60417607 to 60417625 18 + TSS region transcription start site region 101891
Tssr108292 11 60417928 to 60417970 42 - TSS region transcription start site region 108292
Tssr108293 11 60418582 to 60418608 26 - TSS region transcription start site region 108293
Tssr101892 11 60444308 to 60444313 5 + TSS region transcription start site region 101892
Gm12268 11 60446743 to 60447184 441 + pseudogene predicted gene 12268
Gm12267 11 60449210 to 60449970 760 - pseudogene predicted gene 12267
Cpgi2985 11 60454416 to 60455049 633 CpG island CpG island 2985
Tssr101893 11 60454587 to 60454657 70 + TSS region transcription start site region 101893
Drg2 11 60454617 to 60468752 14135 + protein coding gene developmentally regulated GTP binding protein 2