Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:5961533-6731558

Filter by:
235 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ykt6 11 5955758 to 5967780 12022 + protein coding gene YKT6 v-SNARE homolog (S. cerevisiae)
Camk2b 11 5969642 to 6066125 96483 - protein coding gene calcium/calmodulin-dependent protein kinase II, beta
Tssr106669 11 5971726 to 5971738 12 - TSS region transcription start site region 106669
Tssr106670 11 5971763 to 5971775 12 - TSS region transcription start site region 106670
Cpgi2549 11 5971998 to 5972506 508 CpG island CpG island 2549
Tssr106671 11 5972446 to 5972472 26 - TSS region transcription start site region 106671
Tssr106672 11 5972684 to 5972708 24 - TSS region transcription start site region 106672
Tssr106673 11 5976192 to 5976216 24 - TSS region transcription start site region 106673
Tssr3419 11 5976230 to 5976238 8 - TSS region transcription start site region 3419
Tssr106674 11 5976319 to 5976329 10 - TSS region transcription start site region 106674
Tssr106675 11 5989658 to 5989670 12 - TSS region transcription start site region 106675
Tssr106676 11 6003179 to 6003191 12 - TSS region transcription start site region 106676
Tssr106677 11 6003202 to 6003218 16 - TSS region transcription start site region 106677
Gm40812 11 6006268 to 6010745 4477 + lncRNA gene predicted gene, 40812
Tssr106678 11 6008819 to 6008851 32 - TSS region transcription start site region 106678
Tssr106679 11 6018604 to 6018641 37 - TSS region transcription start site region 106679
Tssr106680 11 6029043 to 6029052 9 - TSS region transcription start site region 106680
Tssr106681 11 6029216 to 6029249 33 - TSS region transcription start site region 106681
Cpgi2550 11 6064073 to 6064428 355 CpG island CpG island 2550
Cpgi2551 11 6064535 to 6066517 1982 CpG island CpG island 2551
Tssr106682 11 6065539 to 6065635 96 - TSS region transcription start site region 106682
Tssr106683 11 6065637 to 6065663 26 - TSS region transcription start site region 106683
Tssr106684 11 6065671 to 6065688 17 - TSS region transcription start site region 106684
Tssr106685 11 6065697 to 6065728 31 - TSS region transcription start site region 106685
Tssr106686 11 6065737 to 6065755 18 - TSS region transcription start site region 106686
Tssr106687 11 6065768 to 6065779 11 - TSS region transcription start site region 106687
Tssr106688 11 6065890 to 6065911 21 - TSS region transcription start site region 106688
Tssr106689 11 6066110 to 6066120 10 - TSS region transcription start site region 106689
Tssr106690 11 6066121 to 6066137 16 - TSS region transcription start site region 106690
Tssr106691 11 6066354 to 6066365 11 - TSS region transcription start site region 106691
Tssr106692 11 6066371 to 6066384 13 - TSS region transcription start site region 106692
Tssr106693 11 6066396 to 6066411 15 - TSS region transcription start site region 106693
Cpgi2552 11 6068271 to 6068460 189 CpG island CpG island 2552
Gm46269 11 6084679 to 6088719 4040 - lncRNA gene predicted gene, 46269
Nudcd3 11 6105691 to 6200415 94724 - protein coding gene NudC domain containing 3
Tssr106694 11 6159861 to 6159885 24 - TSS region transcription start site region 106694
Rps15a-ps6 11 6172644 to 6173036 392 - pseudogene ribosomal protein S15A, pseudogene 6
Tssr106695 11 6173064 to 6173066 2 - TSS region transcription start site region 106695
Gm11969 11 6182679 to 6183034 355 - pseudogene predicted gene 11969
Cpgi2553 11 6199647 to 6200530 883 CpG island CpG island 2553
Tssr106696 11 6199993 to 6200045 52 - TSS region transcription start site region 106696
A730071L15Rik 11 6200029 to 6201643 1614 + protein coding gene RIKEN cDNA A730071L15Rik gene
Tssr106697 11 6200145 to 6200210 65 - TSS region transcription start site region 106697
Tssr106698 11 6200411 to 6200446 35 - TSS region transcription start site region 106698
Npc1l1 11 6211013 to 6230143 19130 - protein coding gene NPC1 like intracellular cholesterol transporter 1
Tssr106699 11 6213743 to 6213752 9 - TSS region transcription start site region 106699
Tssr106700 11 6213873 to 6213914 41 - TSS region transcription start site region 106700
Tssr106701 11 6222239 to 6222283 44 - TSS region transcription start site region 106701
Tssr106702 11 6228413 to 6228449 36 - TSS region transcription start site region 106702
Tssr106703 11 6229083 to 6229102 19 - TSS region transcription start site region 106703
Tssr106704 11 6229261 to 6229272 11 - TSS region transcription start site region 106704
Tssr106705 11 6230127 to 6230160 33 - TSS region transcription start site region 106705
Tssr106706 11 6230174 to 6230242 68 - TSS region transcription start site region 106706
Tssr100218 11 6230329 to 6230339 10 + TSS region transcription start site region 100218
Tssr100219 11 6242361 to 6242362 1 + TSS region transcription start site region 100219
Gm11401 11 6242378 to 6242721 343 + pseudogene predicted gene 11401
Ddx56 11 6258919 to 6267772 8853 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Cpgi2554 11 6267277 to 6268091 814 CpG island CpG island 2554
Tssr106707 11 6267718 to 6267755 37 - TSS region transcription start site region 106707
Tmed4 11 6270714 to 6274837 4123 - protein coding gene transmembrane p24 trafficking protein 4
Tssr106708 11 6271640 to 6271654 14 - TSS region transcription start site region 106708
n-R5s67 11 6273311 to 6273424 113 + rRNA gene nuclear encoded rRNA 5S 67
Tssr100220 11 6273750 to 6273782 32 + TSS region transcription start site region 100220
Cpgi2555 11 6273939 to 6275168 1229 CpG island CpG island 2555
Tssr106709 11 6274440 to 6274459 19 - TSS region transcription start site region 106709
Tssr106710 11 6274818 to 6274829 11 - TSS region transcription start site region 106710
Tssr106711 11 6274830 to 6274886 56 - TSS region transcription start site region 106711
Cpgi2556 11 6291262 to 6292595 1333 CpG island CpG island 2556
Gm46270 11 6291531 to 6292269 738 - protein coding gene predicted gene, 46270
Tssr100221 11 6291607 to 6291655 48 + TSS region transcription start site region 100221
Ogdh 11 6291633 to 6356642 65009 + protein coding gene oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
Tssr100222 11 6291660 to 6291687 27 + TSS region transcription start site region 100222
Tssr100223 11 6291964 to 6291997 33 + TSS region transcription start site region 100223
Tssr100224 11 6292034 to 6292050 16 + TSS region transcription start site region 100224
Tssr100225 11 6292053 to 6292067 14 + TSS region transcription start site region 100225
Tssr100226 11 6292084 to 6292111 27 + TSS region transcription start site region 100226
Tssr100227 11 6292120 to 6292203 83 + TSS region transcription start site region 100227
Tssr106712 11 6292131 to 6292149 18 - TSS region transcription start site region 106712
Tssr106713 11 6292154 to 6292167 13 - TSS region transcription start site region 106713
Tssr100228 11 6292279 to 6292331 52 + TSS region transcription start site region 100228
Tssr100229 11 6292555 to 6292580 25 + TSS region transcription start site region 100229
Tssr100230 11 6292630 to 6292650 20 + TSS region transcription start site region 100230
Tssr100231 11 6292652 to 6292663 11 + TSS region transcription start site region 100231
Tssr100232 11 6292668 to 6292692 24 + TSS region transcription start site region 100232
Tssr100233 11 6292854 to 6292870 16 + TSS region transcription start site region 100233
Tssr100234 11 6292876 to 6292898 22 + TSS region transcription start site region 100234
Tssr100235 11 6301540 to 6301546 6 + TSS region transcription start site region 100235
Gm45933 11 6307391 to 6307834 443 - pseudogene predicted gene, 45933
Tssr100236 11 6320595 to 6320599 4 + TSS region transcription start site region 100236
Tssr100237 11 6334448 to 6334452 4 + TSS region transcription start site region 100237
Tssr100238 11 6346533 to 6346558 25 + TSS region transcription start site region 100238
Tssr100239 11 6366140 to 6366153 13 + TSS region transcription start site region 100239
Tssr100240 11 6366236 to 6366244 8 + TSS region transcription start site region 100240
Tssr106714 11 6367111 to 6367161 50 - TSS region transcription start site region 106714
Cpgi2557 11 6388811 to 6390072 1261 CpG island CpG island 2557
Tssr100241 11 6389061 to 6389080 19 + TSS region transcription start site region 100241
Zmiz2 11 6389074 to 6406158 17084 + protein coding gene zinc finger, MIZ-type containing 2
Tssr100242 11 6389085 to 6389106 21 + TSS region transcription start site region 100242
Tssr100243 11 6389117 to 6389137 20 + TSS region transcription start site region 100243
Tssr100244 11 6389330 to 6389397 67 + TSS region transcription start site region 100244
Tssr100245 11 6389428 to 6389435 7 + TSS region transcription start site region 100245
Tssr100246 11 6389442 to 6389453 11 + TSS region transcription start site region 100246
Tssr100247 11 6389553 to 6389573 20 + TSS region transcription start site region 100247
Tssr100248 11 6389576 to 6389596 20 + TSS region transcription start site region 100248
Mir7651 11 6401630 to 6401693 63 + miRNA gene microRNA 7651
Tssr100249 11 6403868 to 6403881 13 + TSS region transcription start site region 100249
Cpgi2558 11 6415302 to 6416788 1486 CpG island CpG island 2558
Tssr106715 11 6415649 to 6415691 42 - TSS region transcription start site region 106715
Tssr100250 11 6415774 to 6415783 9 + TSS region transcription start site region 100250
Tssr100251 11 6415803 to 6415813 10 + TSS region transcription start site region 100251
Tssr100252 11 6415830 to 6415867 37 + TSS region transcription start site region 100252
Ppia 11 6415870 to 6419810 3940 + protein coding gene peptidylprolyl isomerase A
Tssr100253 11 6416227 to 6416232 5 + TSS region transcription start site region 100253
Tssr100254 11 6416258 to 6416317 59 + TSS region transcription start site region 100254
Tssr100255 11 6416329 to 6416345 16 + TSS region transcription start site region 100255
H2afv 11 6427229 to 6444443 17214 - protein coding gene H2A histone family, member V
Cpgi2559 11 6443931 to 6444793 862 CpG island CpG island 2559
Tssr106716 11 6444359 to 6444370 11 - TSS region transcription start site region 106716
Tssr106717 11 6444384 to 6444439 55 - TSS region transcription start site region 106717
Tssr100256 11 6446174 to 6446195 21 + TSS region transcription start site region 100256
Gm11970 11 6446218 to 6446537 319 + pseudogene predicted gene 11970
Gm11971 11 6453151 to 6453438 287 + pseudogene predicted gene 11971
Gm11972 11 6455517 to 6455905 388 - pseudogene predicted gene 11972
Purb 11 6467599 to 6475917 8318 - protein coding gene purine rich element binding protein B
Tssr106718 11 6469968 to 6469991 23 - TSS region transcription start site region 106718
Tssr106719 11 6471473 to 6471493 20 - TSS region transcription start site region 106719
Gm22123 11 6472225 to 6472277 52 - miRNA gene predicted gene, 22123
Tssr106720 11 6472232 to 6472239 7 - TSS region transcription start site region 106720
Cpgi2560 11 6474629 to 6476457 1828 CpG island CpG island 2560
Tssr100257 11 6474693 to 6474751 58 + TSS region transcription start site region 100257
Tssr100258 11 6474906 to 6474946 40 + TSS region transcription start site region 100258
Tssr100259 11 6474962 to 6475025 63 + TSS region transcription start site region 100259
Tssr100260 11 6475102 to 6475116 14 + TSS region transcription start site region 100260
Tssr100261 11 6475266 to 6475307 41 + TSS region transcription start site region 100261
Gm11973 11 6475425 to 6493535 18110 + antisense lncRNA gene predicted gene 11973
Tssr106721 11 6475450 to 6475470 20 - TSS region transcription start site region 106721
Tssr106722 11 6475881 to 6475917 36 - TSS region transcription start site region 106722
Tssr106723 11 6475992 to 6476102 110 - TSS region transcription start site region 106723
Tssr100262 11 6476161 to 6476175 14 + TSS region transcription start site region 100262
Myo1g 11 6506548 to 6520960 14412 - protein coding gene myosin IG
Tssr106724 11 6519168 to 6519180 12 - TSS region transcription start site region 106724
Tssr106725 11 6519497 to 6519513 16 - TSS region transcription start site region 106725
Tssr106726 11 6519769 to 6519789 20 - TSS region transcription start site region 106726
Tssr106727 11 6519800 to 6519828 28 - TSS region transcription start site region 106727
Tssr106728 11 6520844 to 6520851 7 - TSS region transcription start site region 106728
Tssr106729 11 6520864 to 6520866 2 - TSS region transcription start site region 106729
Tssr106730 11 6520872 to 6520891 19 - TSS region transcription start site region 106730
Tssr106731 11 6520894 to 6520969 75 - TSS region transcription start site region 106731
Tssr100263 11 6521010 to 6521024 14 + TSS region transcription start site region 100263
Tssr100264 11 6521038 to 6521048 10 + TSS region transcription start site region 100264
Tssr106732 11 6522782 to 6522786 4 - TSS region transcription start site region 106732
Tssr106733 11 6522848 to 6522854 6 - TSS region transcription start site region 106733
Snhg15 11 6525591 to 6528760 3169 - lncRNA gene small nucleolar RNA host gene 15
Snora9 11 6528033 to 6528165 132 - snoRNA gene small nucleolar RNA, H/ACA box 9
Cpgi2561 11 6528277 to 6529061 784 CpG island CpG island 2561
Tssr106734 11 6528394 to 6528403 9 - TSS region transcription start site region 106734
Tssr106735 11 6528420 to 6528433 13 - TSS region transcription start site region 106735
Tssr106736 11 6528441 to 6528462 21 - TSS region transcription start site region 106736
Tssr106737 11 6528496 to 6528521 25 - TSS region transcription start site region 106737
Tssr106738 11 6528707 to 6528780 73 - TSS region transcription start site region 106738
Tssr106739 11 6528782 to 6528807 25 - TSS region transcription start site region 106739
Tssr100265 11 6528902 to 6528915 13 + TSS region transcription start site region 100265
Gm24000 11 6546147 to 6546235 88 - snoRNA gene predicted gene, 24000
Cpgi2562 11 6546414 to 6547430 1016 CpG island CpG island 2562
Tssr106740 11 6546753 to 6546793 40 - TSS region transcription start site region 106740
Tssr100266 11 6546875 to 6546898 23 + TSS region transcription start site region 100266
Ccm2 11 6546887 to 6596744 49857 + protein coding gene cerebral cavernous malformation 2
Tssr100267 11 6546899 to 6546941 42 + TSS region transcription start site region 100267
2810468A05Rik 11 6547176 to 6547684 508 unclassified gene RIKEN cDNA 2810468A05 gene
Tssr3420 11 6547209 to 6547220 11 + TSS region transcription start site region 3420
Tssr100268 11 6547275 to 6547295 20 + TSS region transcription start site region 100268
Gm11975 11 6559023 to 6559503 480 - pseudogene predicted gene 11975
Tssr100269 11 6560167 to 6560190 23 + TSS region transcription start site region 100269
Tssr100270 11 6560191 to 6560209 18 + TSS region transcription start site region 100270
Tssr100271 11 6560226 to 6560240 14 + TSS region transcription start site region 100271
Tssr106741 11 6560972 to 6560976 4 - TSS region transcription start site region 106741
Tssr106742 11 6561000 to 6561023 23 - TSS region transcription start site region 106742
Tssr100272 11 6561106 to 6561126 20 + TSS region transcription start site region 100272
Tssr100273 11 6561133 to 6561149 16 + TSS region transcription start site region 100273
Tssr100274 11 6561178 to 6561181 3 + TSS region transcription start site region 100274
Tssr100275 11 6564348 to 6564361 13 + TSS region transcription start site region 100275
Tssr100276 11 6588227 to 6588231 4 + TSS region transcription start site region 100276
Tssr100277 11 6588979 to 6588980 1 + TSS region transcription start site region 100277
Nacad 11 6597823 to 6606053 8230 - protein coding gene NAC alpha domain containing
Cpgi2563 11 6598946 to 6599275 329 CpG island CpG island 2563
Tssr106743 11 6599435 to 6599445 10 - TSS region transcription start site region 106743
Cpgi2564 11 6605163 to 6606131 968 CpG island CpG island 2564
Tssr106744 11 6605571 to 6605642 71 - TSS region transcription start site region 106744
Tssr106745 11 6605661 to 6605670 9 - TSS region transcription start site region 106745
Tbrg4 11 6615598 to 6626067 10469 - protein coding gene transforming growth factor beta regulated gene 4
Gm24313 11 6619808 to 6619940 132 - snoRNA gene predicted gene, 24313
Snora5c 11 6620319 to 6620419 100 - snoRNA gene small nucleolar RNA, H/ACA box 5C
Tssr106746 11 6623980 to 6623991 11 - TSS region transcription start site region 106746
Tssr106747 11 6624230 to 6624263 33 - TSS region transcription start site region 106747
Cpgi2565 11 6625645 to 6626540 895 CpG island CpG island 2565
Tssr106748 11 6625785 to 6625796 11 - TSS region transcription start site region 106748
Tssr106749 11 6625805 to 6625822 17 - TSS region transcription start site region 106749
Tssr106750 11 6626030 to 6626072 42 - TSS region transcription start site region 106750
Tssr100278 11 6626120 to 6626191 71 + TSS region transcription start site region 100278
D030016M11Rik 11 6626134 to 6627497 1363 unclassified gene RIKEN cDNA D030016M11 gene