Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:59558137-60068273

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nlrp3 11 59541569 to 59566956 25387 + protein coding gene NLR family, pyrin domain containing 3
Tssr101840 11 59559028 to 59559032 4 + TSS region transcription start site region 101840
Tssr101841 11 59559111 to 59559159 48 + TSS region transcription start site region 101841
Tssr101842 11 59559264 to 59559280 16 + TSS region transcription start site region 101842
Tssr101843 11 59559730 to 59559742 12 + TSS region transcription start site region 101843
Tssr101844 11 59564605 to 59564619 14 + TSS region transcription start site region 101844
Tssr101845 11 59565922 to 59565940 18 + TSS region transcription start site region 101845
Tssr101846 11 59565975 to 59565986 11 + TSS region transcription start site region 101846
Tssr101847 11 59565988 to 59565997 9 + TSS region transcription start site region 101847
Tssr101848 11 59566154 to 59566177 23 + TSS region transcription start site region 101848
Tssr101849 11 59566263 to 59566307 44 + TSS region transcription start site region 101849
Tssr101850 11 59566320 to 59566343 23 + TSS region transcription start site region 101850
Tssr101851 11 59566347 to 59566356 9 + TSS region transcription start site region 101851
Tssr101852 11 59566378 to 59566391 13 + TSS region transcription start site region 101852
Tssr101853 11 59566399 to 59566414 15 + TSS region transcription start site region 101853
Tssr101854 11 59566416 to 59566427 11 + TSS region transcription start site region 101854
Tssr101855 11 59566487 to 59566501 14 + TSS region transcription start site region 101855
Olfr222 11 59570782 to 59571738 956 - protein coding gene olfactory receptor 222
Cpgi2965 11 59571285 to 59571445 160 CpG island CpG island 2965
Gm12261 11 59577992 to 59578636 644 - pseudogene predicted gene 12261
Olfr223 11 59589128 to 59590087 959 - protein coding gene olfactory receptor 223
Gm5027 11 59602919 to 59603293 374 - pseudogene predicted gene 5027
Olfr225 11 59612966 to 59614225 1259 + polymorphic pseudogene olfactory receptor 225
Tssr101856 11 59634194 to 59634196 2 + TSS region transcription start site region 101856
A630028G03Rik 11 59635492 to 59637735 2243 unclassified gene RIKEN cDNA A630028G03 gene
Gm33998 11 59636742 to 59643374 6632 - lncRNA gene predicted gene, 33998
Tssr108238 11 59644492 to 59644495 3 - TSS region transcription start site region 108238
Cpgi2966 11 59662017 to 59663370 1353 CpG island CpG island 2966
Tssr101857 11 59662471 to 59662543 72 + TSS region transcription start site region 101857
Mprip 11 59662473 to 59780860 118387 + protein coding gene myosin phosphatase Rho interacting protein
Tssr101858 11 59662672 to 59662695 23 + TSS region transcription start site region 101858
Tssr101859 11 59662699 to 59662759 60 + TSS region transcription start site region 101859
Tssr101860 11 59706350 to 59706389 39 + TSS region transcription start site region 101860
1700007J10Rik 11 59725917 to 59740154 14237 - lncRNA gene RIKEN cDNA 1700007J10 gene
Tssr101861 11 59740258 to 59740278 20 + TSS region transcription start site region 101861
Tssr101862 11 59750159 to 59750187 28 + TSS region transcription start site region 101862
Gm12264 11 59775286 to 59780321 5035 - antisense lncRNA gene predicted gene 12264
Pld6 11 59783897 to 59787645 3748 - protein coding gene phospholipase D family, member 6
Cpgi2967 11 59787109 to 59787932 823 CpG island CpG island 2967
Tssr108239 11 59787192 to 59787201 9 - TSS region transcription start site region 108239
Tssr108240 11 59787210 to 59787231 21 - TSS region transcription start site region 108240
Tssr108241 11 59787235 to 59787244 9 - TSS region transcription start site region 108241
Tssr108242 11 59787269 to 59787283 14 - TSS region transcription start site region 108242
Tssr108243 11 59787284 to 59787295 11 - TSS region transcription start site region 108243
Tssr108244 11 59787313 to 59787322 9 - TSS region transcription start site region 108244
Tssr108245 11 59787636 to 59787683 47 - TSS region transcription start site region 108245
Flcn 11 59791408 to 59810016 18608 - protein coding gene folliculin
Cpgi2968 11 59809536 to 59810327 791 CpG island CpG island 2968
Tssr108246 11 59809774 to 59809847 73 - TSS region transcription start site region 108246
Tssr108247 11 59810026 to 59810044 18 - TSS region transcription start site region 108247
Gm16062 11 59810080 to 59818362 8282 + antisense lncRNA gene predicted gene 16062
Tssr101863 11 59810107 to 59810133 26 + TSS region transcription start site region 101863
Tssr101864 11 59810287 to 59810299 12 + TSS region transcription start site region 101864
Tssr101865 11 59810309 to 59810334 25 + TSS region transcription start site region 101865
Gm24939 11 59813137 to 59813273 136 + rRNA gene predicted gene, 24939
Dp(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 chromosomal duplication duplication, Chr 11, James R Lupski 1
Cops3 11 59817795 to 59839837 22042 - protein coding gene COP9 signalosome subunit 3
Del(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 complex/cluster/region deletion, Chr 11, James R Lupski 1
Del(11Cops3-Gid4)3Jrl 11 59817795 to 60445277 627482 cytogenetic marker deletion, Chr 11, James R Lupski 3
Del(11Cops3-Gid4)4Jrl 11 59817795 to 60445277 627482 complex/cluster/region deletion, Chr 11, James R Lupski 4
Tssr108248 11 59826956 to 59826965 9 - TSS region transcription start site region 108248
Tssr108249 11 59836923 to 59836941 18 - TSS region transcription start site region 108249
Cpgi2969 11 59839097 to 59839954 857 CpG island CpG island 2969
Tssr108250 11 59839239 to 59839259 20 - TSS region transcription start site region 108250
Tssr108251 11 59839275 to 59839296 21 - TSS region transcription start site region 108251
Tssr101866 11 59839398 to 59839409 11 + TSS region transcription start site region 101866
Tssr108252 11 59839745 to 59839763 18 - TSS region transcription start site region 108252
Tssr108253 11 59839776 to 59839794 18 - TSS region transcription start site region 108253
Tssr108254 11 59839803 to 59839818 15 - TSS region transcription start site region 108254
Tssr108255 11 59839828 to 59839843 15 - TSS region transcription start site region 108255
Nt5m 11 59847506 to 59876533 29027 + protein coding gene 5',3'-nucleotidase, mitochondrial
Cpgi2970 11 59847858 to 59848769 911 CpG island CpG island 2970
Tssr101867 11 59848040 to 59848102 62 + TSS region transcription start site region 101867
Tssr101868 11 59848152 to 59848180 28 + TSS region transcription start site region 101868
Tssr108256 11 59848236 to 59848257 21 - TSS region transcription start site region 108256
Tssr101869 11 59848276 to 59848328 52 + TSS region transcription start site region 101869
Tssr101870 11 59887215 to 59887219 4 + TSS region transcription start site region 101870
Gm12714 11 59898374 to 59907319 8945 + lincRNA gene predicted gene 12714
1810063I02Rik 11 59921499 to 59921889 390 + lincRNA gene RIKEN cDNA 1810063I02 gene
Med9os 11 59946889 to 59948142 1253 - antisense lncRNA gene mediator complex subunit 9, opposite strand
Cpgi2971 11 59947841 to 59948680 839 CpG island CpG island 2971
Tssr108257 11 59948079 to 59948101 22 - TSS region transcription start site region 108257
Tssr108258 11 59948107 to 59948163 56 - TSS region transcription start site region 108258
Tssr108259 11 59948175 to 59948181 6 - TSS region transcription start site region 108259
Med9 11 59948206 to 59962205 13999 + protein coding gene mediator complex subunit 9
Tssr101871 11 59948209 to 59948261 52 + TSS region transcription start site region 101871
Rasd1 11 59963181 to 59964944 1763 - protein coding gene RAS, dexamethasone-induced 1
Cpgi2972 11 59963686 to 59965496 1810 CpG island CpG island 2972
Tssr108260 11 59964911 to 59964922 11 - TSS region transcription start site region 108260
Tssr108261 11 59964936 to 59964951 15 - TSS region transcription start site region 108261
Pemt 11 59970614 to 60046489 75875 - protein coding gene phosphatidylethanolamine N-methyltransferase
Tssr108262 11 59976940 to 59976946 6 - TSS region transcription start site region 108262
Tssr108263 11 59983499 to 59983522 23 - TSS region transcription start site region 108263
Gm38498 11 60020769 to 60026954 6185 - lncRNA gene predicted gene, 38498
Tssr108264 11 60021218 to 60021231 13 - TSS region transcription start site region 108264
Tssr108265 11 60031828 to 60031837 9 - TSS region transcription start site region 108265
Tssr108266 11 60031847 to 60031869 22 - TSS region transcription start site region 108266
Tssr108267 11 60031874 to 60031891 17 - TSS region transcription start site region 108267
Tssr108268 11 60031902 to 60031914 12 - TSS region transcription start site region 108268
Tssr108269 11 60036863 to 60036914 51 - TSS region transcription start site region 108269
Tssr108270 11 60036917 to 60036992 75 - TSS region transcription start site region 108270
Cpgi2973 11 60046088 to 60046617 529 CpG island CpG island 2973
Tssr108271 11 60046478 to 60046532 54 - TSS region transcription start site region 108271