Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:59544637-63614707

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783 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity2a 11 37877753 to 60511890 22634137 QTL immunity to S. typhimurium 2a
Acigg5 11 46528416 to 62992617 16464201 QTL anti COL7 IgG2a/c antibody 5
Spqq1 11 54174844 to 63428696 9253852 QTL sperm quality QTL 1
Nlrp3 11 59541569 to 59566956 25387 + protein coding gene NLR family, pyrin domain containing 3
Tssr101817 11 59548509 to 59548523 14 + TSS region transcription start site region 101817
Tssr101818 11 59548565 to 59548575 10 + TSS region transcription start site region 101818
Tssr101819 11 59548636 to 59548647 11 + TSS region transcription start site region 101819
Tssr101820 11 59548649 to 59548686 37 + TSS region transcription start site region 101820
Tssr101821 11 59548948 to 59548967 19 + TSS region transcription start site region 101821
Tssr101822 11 59549209 to 59549218 9 + TSS region transcription start site region 101822
Tssr101823 11 59549640 to 59549648 8 + TSS region transcription start site region 101823
Tssr101824 11 59549741 to 59549753 12 + TSS region transcription start site region 101824
Tssr101825 11 59553505 to 59553508 3 + TSS region transcription start site region 101825
Tssr101826 11 59555917 to 59555922 5 + TSS region transcription start site region 101826
Tssr101827 11 59556228 to 59556239 11 + TSS region transcription start site region 101827
Tssr101828 11 59556241 to 59556257 16 + TSS region transcription start site region 101828
Tssr101829 11 59556310 to 59556326 16 + TSS region transcription start site region 101829
Tssr101830 11 59556337 to 59556347 10 + TSS region transcription start site region 101830
Tssr101831 11 59556397 to 59556411 14 + TSS region transcription start site region 101831
Tssr101832 11 59556421 to 59556432 11 + TSS region transcription start site region 101832
Tssr101833 11 59556472 to 59556482 10 + TSS region transcription start site region 101833
Tssr101834 11 59556488 to 59556500 12 + TSS region transcription start site region 101834
Tssr101835 11 59556526 to 59556538 12 + TSS region transcription start site region 101835
Tssr101836 11 59557341 to 59557355 14 + TSS region transcription start site region 101836
Tssr101837 11 59557361 to 59557372 11 + TSS region transcription start site region 101837
Tssr101838 11 59557374 to 59557392 18 + TSS region transcription start site region 101838
Tssr101839 11 59557487 to 59557503 16 + TSS region transcription start site region 101839
Tssr101840 11 59559028 to 59559032 4 + TSS region transcription start site region 101840
Tssr101841 11 59559111 to 59559159 48 + TSS region transcription start site region 101841
Tssr101842 11 59559264 to 59559280 16 + TSS region transcription start site region 101842
Tssr101843 11 59559730 to 59559742 12 + TSS region transcription start site region 101843
Tssr101844 11 59564605 to 59564619 14 + TSS region transcription start site region 101844
Tssr101845 11 59565922 to 59565940 18 + TSS region transcription start site region 101845
Tssr101846 11 59565975 to 59565986 11 + TSS region transcription start site region 101846
Tssr101847 11 59565988 to 59565997 9 + TSS region transcription start site region 101847
Tssr101848 11 59566154 to 59566177 23 + TSS region transcription start site region 101848
Tssr101849 11 59566263 to 59566307 44 + TSS region transcription start site region 101849
Tssr101850 11 59566320 to 59566343 23 + TSS region transcription start site region 101850
Tssr101851 11 59566347 to 59566356 9 + TSS region transcription start site region 101851
Tssr101852 11 59566378 to 59566391 13 + TSS region transcription start site region 101852
Tssr101853 11 59566399 to 59566414 15 + TSS region transcription start site region 101853
Tssr101854 11 59566416 to 59566427 11 + TSS region transcription start site region 101854
Tssr101855 11 59566487 to 59566501 14 + TSS region transcription start site region 101855
Olfr222 11 59570782 to 59571738 956 - protein coding gene olfactory receptor 222
Cpgi2965 11 59571285 to 59571445 160 CpG island CpG island 2965
Gm12261 11 59577992 to 59578636 644 - pseudogene predicted gene 12261
Olfr223 11 59589128 to 59590087 959 - protein coding gene olfactory receptor 223
Gm5027 11 59602919 to 59603293 374 - pseudogene predicted gene 5027
Olfr225 11 59612966 to 59614225 1259 + polymorphic pseudogene olfactory receptor 225
Tssr101856 11 59634194 to 59634196 2 + TSS region transcription start site region 101856
A630028G03Rik 11 59635492 to 59637735 2243 unclassified gene RIKEN cDNA A630028G03 gene
Gm33998 11 59636742 to 59643374 6632 - lncRNA gene predicted gene, 33998
Tssr108238 11 59644492 to 59644495 3 - TSS region transcription start site region 108238
Cpgi2966 11 59662017 to 59663370 1353 CpG island CpG island 2966
Tssr101857 11 59662471 to 59662543 72 + TSS region transcription start site region 101857
Mprip 11 59662473 to 59780860 118387 + protein coding gene myosin phosphatase Rho interacting protein
Tssr101858 11 59662672 to 59662695 23 + TSS region transcription start site region 101858
Tssr101859 11 59662699 to 59662759 60 + TSS region transcription start site region 101859
Tssr101860 11 59706350 to 59706389 39 + TSS region transcription start site region 101860
1700007J10Rik 11 59725917 to 59740154 14237 - lncRNA gene RIKEN cDNA 1700007J10 gene
Tssr101861 11 59740258 to 59740278 20 + TSS region transcription start site region 101861
Tssr101862 11 59750159 to 59750187 28 + TSS region transcription start site region 101862
Gm12264 11 59775286 to 59780321 5035 - antisense lncRNA gene predicted gene 12264
Pld6 11 59783897 to 59787645 3748 - protein coding gene phospholipase D family, member 6
Cpgi2967 11 59787109 to 59787932 823 CpG island CpG island 2967
Tssr108239 11 59787192 to 59787201 9 - TSS region transcription start site region 108239
Tssr108240 11 59787210 to 59787231 21 - TSS region transcription start site region 108240
Tssr108241 11 59787235 to 59787244 9 - TSS region transcription start site region 108241
Tssr108242 11 59787269 to 59787283 14 - TSS region transcription start site region 108242
Tssr108243 11 59787284 to 59787295 11 - TSS region transcription start site region 108243
Tssr108244 11 59787313 to 59787322 9 - TSS region transcription start site region 108244
Tssr108245 11 59787636 to 59787683 47 - TSS region transcription start site region 108245
Flcn 11 59791408 to 59810016 18608 - protein coding gene folliculin
Cpgi2968 11 59809536 to 59810327 791 CpG island CpG island 2968
Tssr108246 11 59809774 to 59809847 73 - TSS region transcription start site region 108246
Tssr108247 11 59810026 to 59810044 18 - TSS region transcription start site region 108247
Gm16062 11 59810080 to 59818362 8282 + antisense lncRNA gene predicted gene 16062
Tssr101863 11 59810107 to 59810133 26 + TSS region transcription start site region 101863
Tssr101864 11 59810287 to 59810299 12 + TSS region transcription start site region 101864
Tssr101865 11 59810309 to 59810334 25 + TSS region transcription start site region 101865
Gm24939 11 59813137 to 59813273 136 + rRNA gene predicted gene, 24939
Del(11Cops3-Gid4)4Jrl 11 59817795 to 60445277 627482 complex/cluster/region deletion, Chr 11, James R Lupski 4
Cops3 11 59817795 to 59839837 22042 - protein coding gene COP9 signalosome subunit 3
Del(11Cops3-Gid4)3Jrl 11 59817795 to 60445277 627482 cytogenetic marker deletion, Chr 11, James R Lupski 3
Del(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 complex/cluster/region deletion, Chr 11, James R Lupski 1
Dp(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 chromosomal duplication duplication, Chr 11, James R Lupski 1
Tssr108248 11 59826956 to 59826965 9 - TSS region transcription start site region 108248
Tssr108249 11 59836923 to 59836941 18 - TSS region transcription start site region 108249
Cpgi2969 11 59839097 to 59839954 857 CpG island CpG island 2969
Tssr108250 11 59839239 to 59839259 20 - TSS region transcription start site region 108250
Tssr108251 11 59839275 to 59839296 21 - TSS region transcription start site region 108251
Tssr101866 11 59839398 to 59839409 11 + TSS region transcription start site region 101866
Tssr108252 11 59839745 to 59839763 18 - TSS region transcription start site region 108252
Tssr108253 11 59839776 to 59839794 18 - TSS region transcription start site region 108253
Tssr108254 11 59839803 to 59839818 15 - TSS region transcription start site region 108254
Tssr108255 11 59839828 to 59839843 15 - TSS region transcription start site region 108255
Nt5m 11 59847506 to 59876533 29027 + protein coding gene 5',3'-nucleotidase, mitochondrial
Cpgi2970 11 59847858 to 59848769 911 CpG island CpG island 2970
Tssr101867 11 59848040 to 59848102 62 + TSS region transcription start site region 101867
Tssr101868 11 59848152 to 59848180 28 + TSS region transcription start site region 101868
Tssr108256 11 59848236 to 59848257 21 - TSS region transcription start site region 108256
Tssr101869 11 59848276 to 59848328 52 + TSS region transcription start site region 101869
Tssr101870 11 59887215 to 59887219 4 + TSS region transcription start site region 101870
Gm12714 11 59898374 to 59907319 8945 + lincRNA gene predicted gene 12714
1810063I02Rik 11 59921499 to 59921889 390 + lincRNA gene RIKEN cDNA 1810063I02 gene
Med9os 11 59946889 to 59948142 1253 - antisense lncRNA gene mediator complex subunit 9, opposite strand
Cpgi2971 11 59947841 to 59948680 839 CpG island CpG island 2971
Tssr108257 11 59948079 to 59948101 22 - TSS region transcription start site region 108257
Tssr108258 11 59948107 to 59948163 56 - TSS region transcription start site region 108258
Tssr108259 11 59948175 to 59948181 6 - TSS region transcription start site region 108259
Med9 11 59948206 to 59962205 13999 + protein coding gene mediator complex subunit 9
Tssr101871 11 59948209 to 59948261 52 + TSS region transcription start site region 101871
Rasd1 11 59963181 to 59964944 1763 - protein coding gene RAS, dexamethasone-induced 1
Cpgi2972 11 59963686 to 59965496 1810 CpG island CpG island 2972
Tssr108260 11 59964911 to 59964922 11 - TSS region transcription start site region 108260
Tssr108261 11 59964936 to 59964951 15 - TSS region transcription start site region 108261
Pemt 11 59970614 to 60046489 75875 - protein coding gene phosphatidylethanolamine N-methyltransferase
Tssr108262 11 59976940 to 59976946 6 - TSS region transcription start site region 108262
Tssr108263 11 59983499 to 59983522 23 - TSS region transcription start site region 108263
Gm38498 11 60020769 to 60026954 6185 - lncRNA gene predicted gene, 38498
Tssr108264 11 60021218 to 60021231 13 - TSS region transcription start site region 108264
Tssr108265 11 60031828 to 60031837 9 - TSS region transcription start site region 108265
Tssr108266 11 60031847 to 60031869 22 - TSS region transcription start site region 108266
Tssr108267 11 60031874 to 60031891 17 - TSS region transcription start site region 108267
Tssr108268 11 60031902 to 60031914 12 - TSS region transcription start site region 108268
Tssr108269 11 60036863 to 60036914 51 - TSS region transcription start site region 108269
Tssr108270 11 60036917 to 60036992 75 - TSS region transcription start site region 108270
Cpgi2973 11 60046088 to 60046617 529 CpG island CpG island 2973
Tssr108271 11 60046478 to 60046532 54 - TSS region transcription start site region 108271
Tssr101872 11 60074433 to 60074434 1 + TSS region transcription start site region 101872
Cpgi2974 11 60088368 to 60088545 177 CpG island CpG island 2974
Gm27511 11 60099547 to 60099673 126 + unclassified non-coding RNA gene predicted gene, 27511
Tssr108272 11 60099973 to 60099993 20 - TSS region transcription start site region 108272
Tssr108273 11 60099999 to 60100019 20 - TSS region transcription start site region 108273
Cpgi2975 11 60104523 to 60106844 2321 CpG island CpG island 2975
Tssr101873 11 60104916 to 60104967 51 + TSS region transcription start site region 101873
Tssr101874 11 60104971 to 60105013 42 + TSS region transcription start site region 101874
Rai1 11 60105013 to 60199197 94184 + protein coding gene retinoic acid induced 1
Tssr101875 11 60105015 to 60105035 20 + TSS region transcription start site region 101875
Tssr101876 11 60105052 to 60105078 26 + TSS region transcription start site region 101876
Tssr101877 11 60105079 to 60105097 18 + TSS region transcription start site region 101877
Tssr108274 11 60106523 to 60106545 22 - TSS region transcription start site region 108274
4930412M03Rik 11 60112219 to 60115230 3011 - lincRNA gene RIKEN cDNA 4930412M03 gene
Cpgi2976 11 60114904 to 60115693 789 CpG island CpG island 2976
Tssr108275 11 60115226 to 60115237 11 - TSS region transcription start site region 108275
Cpgi2977 11 60139232 to 60140948 1716 CpG island CpG island 2977
Tssr101878 11 60139957 to 60140025 68 + TSS region transcription start site region 101878
Tssr101879 11 60140066 to 60140080 14 + TSS region transcription start site region 101879
Cpgi2978 11 60175339 to 60177557 2218 CpG island CpG island 2978
Tssr101880 11 60175857 to 60175887 30 + TSS region transcription start site region 101880
Tssr108276 11 60176613 to 60176660 47 - TSS region transcription start site region 108276
Srebf1 11 60199089 to 60222581 23492 - protein coding gene sterol regulatory element binding transcription factor 1
Tssr108277 11 60199419 to 60199453 34 - TSS region transcription start site region 108277
Cpgi2979 11 60199823 to 60200175 352 CpG island CpG island 2979
Mir6921 11 60200538 to 60200617 79 - miRNA gene microRNA 6921
Mir6922 11 60202262 to 60202327 65 - miRNA gene microRNA 6922
Cpgi2980 11 60210010 to 60211136 1126 CpG island CpG island 2980
Tssr108278 11 60210410 to 60210428 18 - TSS region transcription start site region 108278
Cpgi2981 11 60220234 to 60220894 660 CpG island CpG island 2981
Tssr108279 11 60220537 to 60220548 11 - TSS region transcription start site region 108279
Tssr108280 11 60220550 to 60220632 82 - TSS region transcription start site region 108280
Cpgi2982 11 60222526 to 60223243 717 CpG island CpG island 2982
Tssr108281 11 60222756 to 60222774 18 - TSS region transcription start site region 108281
Tssr108282 11 60222832 to 60222852 20 - TSS region transcription start site region 108282
Tssr108283 11 60222854 to 60222872 18 - TSS region transcription start site region 108283
Tom1l2 11 60226714 to 60352905 126191 - protein coding gene target of myb1-like 2 (chicken)
Tssr108284 11 60229766 to 60229780 14 - TSS region transcription start site region 108284
Tssr108285 11 60239725 to 60239742 17 - TSS region transcription start site region 108285
Tssr108286 11 60239979 to 60240002 23 - TSS region transcription start site region 108286
Tssr101881 11 60240727 to 60240739 12 + TSS region transcription start site region 101881
Gm12265 11 60240810 to 60241930 1120 + antisense lncRNA gene predicted gene 12265
Gm38501 11 60254661 to 60258543 3882 - lncRNA gene predicted gene, 38501
Tssr108287 11 60263382 to 60263393 11 - TSS region transcription start site region 108287
Tssr108288 11 60296590 to 60296624 34 - TSS region transcription start site region 108288
Gm27711 11 60302707 to 60302824 117 - miRNA gene predicted gene, 27711
Gm12266 11 60343245 to 60344206 961 + pseudogene predicted gene 12266
Cpgi2983 11 60352479 to 60353380 901 CpG island CpG island 2983
Tssr108289 11 60352869 to 60352896 27 - TSS region transcription start site region 108289
Tssr108290 11 60352927 to 60352932 5 - TSS region transcription start site region 108290
Tssr101882 11 60353076 to 60353090 14 + TSS region transcription start site region 101882
Tssr101883 11 60353324 to 60353408 84 + TSS region transcription start site region 101883
Drc3 11 60353329 to 60394341 41012 + protein coding gene dynein regulatory complex subunit 3
Tssr101884 11 60388190 to 60388213 23 + TSS region transcription start site region 101884
Atpaf2 11 60400626 to 60418457 17831 - protein coding gene ATP synthase mitochondrial F1 complex assembly factor 2
Cpgi2984 11 60416616 to 60418265 1649 CpG island CpG island 2984
Tssr108291 11 60417022 to 60417056 34 - TSS region transcription start site region 108291
Tssr101885 11 60417128 to 60417133 5 + TSS region transcription start site region 101885
Gid4 11 60417145 to 60445277 28132 + protein coding gene GID complex subunit 4, VID24 homolog
Tssr101886 11 60417152 to 60417181 29 + TSS region transcription start site region 101886
Tssr101887 11 60417188 to 60417195 7 + TSS region transcription start site region 101887
Tssr101888 11 60417238 to 60417301 63 + TSS region transcription start site region 101888
Tssr101889 11 60417304 to 60417330 26 + TSS region transcription start site region 101889
Tssr101890 11 60417542 to 60417600 58 + TSS region transcription start site region 101890
Tssr101891 11 60417607 to 60417625 18 + TSS region transcription start site region 101891
Tssr108292 11 60417928 to 60417970 42 - TSS region transcription start site region 108292
Tssr108293 11 60418582 to 60418608 26 - TSS region transcription start site region 108293
Tssr101892 11 60444308 to 60444313 5 + TSS region transcription start site region 101892
Gm12268 11 60446743 to 60447184 441 + pseudogene predicted gene 12268
Gm12267 11 60449210 to 60449970 760 - pseudogene predicted gene 12267
Cpgi2985 11 60454416 to 60455049 633 CpG island CpG island 2985