Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:59416337-59696347

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snap47 11 59407141 to 59450034 42893 - protein coding gene synaptosomal-associated protein, 47
Tssr108218 11 59421620 to 59421636 16 - TSS region transcription start site region 108218
Tssr108219 11 59430117 to 59430121 4 - TSS region transcription start site region 108219
Cpgi2962 11 59449459 to 59450721 1262 CpG island CpG island 2962
Tssr108220 11 59449941 to 59449950 9 - TSS region transcription start site region 108220
Tssr108221 11 59449953 to 59450035 82 - TSS region transcription start site region 108221
Tssr101796 11 59450040 to 59450095 55 + TSS region transcription start site region 101796
Jmjd4 11 59450045 to 59458567 8522 + protein coding gene jumonji domain containing 4
Tssr101797 11 59450130 to 59450140 10 + TSS region transcription start site region 101797
Zfp867 11 59461197 to 59472474 11277 - protein coding gene zinc finger protein 867
Cpgi2963 11 59471880 to 59472599 719 CpG island CpG island 2963
Tssr108222 11 59472432 to 59472460 28 - TSS region transcription start site region 108222
Tssr108223 11 59472464 to 59472488 24 - TSS region transcription start site region 108223
Gm12263 11 59474287 to 59475765 1478 - pseudogene predicted gene 12263
Gm12262 11 59481973 to 59482277 304 + pseudogene predicted gene 12262
Zkscan17 11 59485520 to 59506640 21120 - protein coding gene zinc finger with KRAB and SCAN domains 17
Tssr108224 11 59490074 to 59490075 1 - TSS region transcription start site region 108224
Tssr108225 11 59500193 to 59500198 5 - TSS region transcription start site region 108225
Cpgi2964 11 59505294 to 59506958 1664 CpG island CpG island 2964
Tssr101798 11 59505636 to 59505683 47 + TSS region transcription start site region 101798
4933439C10Rik 11 59505653 to 59511385 5732 + lncRNA gene RIKEN cDNA 4933439C10 gene
Tssr108226 11 59506199 to 59506239 40 - TSS region transcription start site region 108226
Tssr108227 11 59506294 to 59506299 5 - TSS region transcription start site region 108227
Tssr108228 11 59506392 to 59506408 16 - TSS region transcription start site region 108228
Tssr108229 11 59506419 to 59506442 23 - TSS region transcription start site region 108229
Tssr108230 11 59506445 to 59506456 11 - TSS region transcription start site region 108230
Tssr108231 11 59506526 to 59506597 71 - TSS region transcription start site region 108231
Tssr108232 11 59523724 to 59523727 3 - TSS region transcription start site region 108232
Tssr108233 11 59526619 to 59526660 41 - TSS region transcription start site region 108233
Tssr108234 11 59526691 to 59526711 20 - TSS region transcription start site region 108234
Tssr108235 11 59526858 to 59526885 27 - TSS region transcription start site region 108235
Tssr3513 11 59541400 to 59541446 46 - TSS region transcription start site region 3513
Nlrp3 11 59541569 to 59566956 25387 + protein coding gene NLR family, pyrin domain containing 3
Tssr101799 11 59541578 to 59541591 13 + TSS region transcription start site region 101799
Tssr101800 11 59541601 to 59541615 14 + TSS region transcription start site region 101800
Tssr101801 11 59541654 to 59541666 12 + TSS region transcription start site region 101801
Tssr108236 11 59542503 to 59542543 40 - TSS region transcription start site region 108236
Tssr101802 11 59542627 to 59542644 17 + TSS region transcription start site region 101802
Tssr101803 11 59542666 to 59542677 11 + TSS region transcription start site region 101803
Tssr101804 11 59542701 to 59542726 25 + TSS region transcription start site region 101804
Tssr101805 11 59542730 to 59542747 17 + TSS region transcription start site region 101805
Tssr101806 11 59542748 to 59542775 27 + TSS region transcription start site region 101806
Tssr101807 11 59542799 to 59542810 11 + TSS region transcription start site region 101807
Tssr101808 11 59542881 to 59542892 11 + TSS region transcription start site region 101808
Tssr101809 11 59542961 to 59542967 6 + TSS region transcription start site region 101809
Tssr101810 11 59542983 to 59543001 18 + TSS region transcription start site region 101810
Tssr101811 11 59543014 to 59543031 17 + TSS region transcription start site region 101811
Tssr101812 11 59543032 to 59543039 7 + TSS region transcription start site region 101812
Tssr101813 11 59543040 to 59543058 18 + TSS region transcription start site region 101813
Tssr101814 11 59543062 to 59543071 9 + TSS region transcription start site region 101814
Tssr101815 11 59543355 to 59543364 9 + TSS region transcription start site region 101815
Tssr101816 11 59543572 to 59543607 35 + TSS region transcription start site region 101816
Tssr108237 11 59544124 to 59544160 36 - TSS region transcription start site region 108237
Tssr101817 11 59548509 to 59548523 14 + TSS region transcription start site region 101817
Tssr101818 11 59548565 to 59548575 10 + TSS region transcription start site region 101818
Tssr101819 11 59548636 to 59548647 11 + TSS region transcription start site region 101819
Tssr101820 11 59548649 to 59548686 37 + TSS region transcription start site region 101820
Tssr101821 11 59548948 to 59548967 19 + TSS region transcription start site region 101821
Tssr101822 11 59549209 to 59549218 9 + TSS region transcription start site region 101822
Tssr101823 11 59549640 to 59549648 8 + TSS region transcription start site region 101823
Tssr101824 11 59549741 to 59549753 12 + TSS region transcription start site region 101824
Tssr101825 11 59553505 to 59553508 3 + TSS region transcription start site region 101825
Tssr101826 11 59555917 to 59555922 5 + TSS region transcription start site region 101826
Tssr101827 11 59556228 to 59556239 11 + TSS region transcription start site region 101827
Tssr101828 11 59556241 to 59556257 16 + TSS region transcription start site region 101828
Tssr101829 11 59556310 to 59556326 16 + TSS region transcription start site region 101829
Tssr101830 11 59556337 to 59556347 10 + TSS region transcription start site region 101830
Tssr101831 11 59556397 to 59556411 14 + TSS region transcription start site region 101831
Tssr101832 11 59556421 to 59556432 11 + TSS region transcription start site region 101832
Tssr101833 11 59556472 to 59556482 10 + TSS region transcription start site region 101833
Tssr101834 11 59556488 to 59556500 12 + TSS region transcription start site region 101834
Tssr101835 11 59556526 to 59556538 12 + TSS region transcription start site region 101835
Tssr101836 11 59557341 to 59557355 14 + TSS region transcription start site region 101836
Tssr101837 11 59557361 to 59557372 11 + TSS region transcription start site region 101837
Tssr101838 11 59557374 to 59557392 18 + TSS region transcription start site region 101838
Tssr101839 11 59557487 to 59557503 16 + TSS region transcription start site region 101839
Tssr101840 11 59559028 to 59559032 4 + TSS region transcription start site region 101840
Tssr101841 11 59559111 to 59559159 48 + TSS region transcription start site region 101841
Tssr101842 11 59559264 to 59559280 16 + TSS region transcription start site region 101842
Tssr101843 11 59559730 to 59559742 12 + TSS region transcription start site region 101843
Tssr101844 11 59564605 to 59564619 14 + TSS region transcription start site region 101844
Tssr101845 11 59565922 to 59565940 18 + TSS region transcription start site region 101845
Tssr101846 11 59565975 to 59565986 11 + TSS region transcription start site region 101846
Tssr101847 11 59565988 to 59565997 9 + TSS region transcription start site region 101847
Tssr101848 11 59566154 to 59566177 23 + TSS region transcription start site region 101848
Tssr101849 11 59566263 to 59566307 44 + TSS region transcription start site region 101849
Tssr101850 11 59566320 to 59566343 23 + TSS region transcription start site region 101850
Tssr101851 11 59566347 to 59566356 9 + TSS region transcription start site region 101851
Tssr101852 11 59566378 to 59566391 13 + TSS region transcription start site region 101852
Tssr101853 11 59566399 to 59566414 15 + TSS region transcription start site region 101853
Tssr101854 11 59566416 to 59566427 11 + TSS region transcription start site region 101854
Tssr101855 11 59566487 to 59566501 14 + TSS region transcription start site region 101855
Olfr222 11 59570782 to 59571738 956 - protein coding gene olfactory receptor 222
Cpgi2965 11 59571285 to 59571445 160 CpG island CpG island 2965
Gm12261 11 59577992 to 59578636 644 - pseudogene predicted gene 12261
Olfr223 11 59589128 to 59590087 959 - protein coding gene olfactory receptor 223
Gm5027 11 59602919 to 59603293 374 - pseudogene predicted gene 5027
Olfr225 11 59612966 to 59614225 1259 + polymorphic pseudogene olfactory receptor 225
Tssr101856 11 59634194 to 59634196 2 + TSS region transcription start site region 101856
A630028G03Rik 11 59635492 to 59637735 2243 unclassified gene RIKEN cDNA A630028G03 gene
Gm33998 11 59636742 to 59643374 6632 - lncRNA gene predicted gene, 33998
Tssr108238 11 59644492 to 59644495 3 - TSS region transcription start site region 108238
Cpgi2966 11 59662017 to 59663370 1353 CpG island CpG island 2966
Tssr101857 11 59662471 to 59662543 72 + TSS region transcription start site region 101857
Mprip 11 59662473 to 59780860 118387 + protein coding gene myosin phosphatase Rho interacting protein
Tssr101858 11 59662672 to 59662695 23 + TSS region transcription start site region 101858
Tssr101859 11 59662699 to 59662759 60 + TSS region transcription start site region 101859