Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:59286923-60386941

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248 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wnt3a 11 59248036 to 59290751 42715 - protein coding gene wingless-type MMTV integration site family, member 3A
Cpgi2959 11 59288689 to 59291376 2687 CpG island CpG island 2959
Tssr108216 11 59290746 to 59290758 12 - TSS region transcription start site region 108216
Cpgi2960 11 59305995 to 59308371 2376 CpG island CpG island 2960
Tssr101794 11 59306920 to 59306935 15 + TSS region transcription start site region 101794
Wnt9a 11 59306928 to 59333552 26624 + protein coding gene wingless-type MMTV integration site family, member 9A
Tssr101795 11 59319680 to 59319685 5 + TSS region transcription start site region 101795
Tssr3512 11 59331388 to 59331391 3 + TSS region transcription start site region 3512
Gm24756 11 59337051 to 59337146 95 - miRNA gene predicted gene, 24756
Sluc36b 11 59365791 to 59365904 113 QTL susceptibility to lung cancer 36b
Sluc36 11 59365791 to 69591873 10226082 QTL susceptibility to lung cancer 36
Sluc36a 11 59365791 to 59365904 113 QTL susceptibility to lung cancer 36a
D11Mit316 11 59365791 to 59365904 113 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 316
Prss38 11 59372669 to 59375657 2988 - protein coding gene protease, serine 38
Cpgi2961 11 59375369 to 59375773 404 CpG island CpG island 2961
Gm15755 11 59375461 to 59379905 4444 + antisense lncRNA gene predicted gene 15755
Snap47 11 59407141 to 59450034 42893 - protein coding gene synaptosomal-associated protein, 47
Tssr108217 11 59413088 to 59413095 7 - TSS region transcription start site region 108217
Tssr108218 11 59421620 to 59421636 16 - TSS region transcription start site region 108218
Tssr108219 11 59430117 to 59430121 4 - TSS region transcription start site region 108219
Cpgi2962 11 59449459 to 59450721 1262 CpG island CpG island 2962
Tssr108220 11 59449941 to 59449950 9 - TSS region transcription start site region 108220
Tssr108221 11 59449953 to 59450035 82 - TSS region transcription start site region 108221
Tssr101796 11 59450040 to 59450095 55 + TSS region transcription start site region 101796
Jmjd4 11 59450045 to 59458567 8522 + protein coding gene jumonji domain containing 4
Tssr101797 11 59450130 to 59450140 10 + TSS region transcription start site region 101797
Zfp867 11 59461197 to 59472474 11277 - protein coding gene zinc finger protein 867
Cpgi2963 11 59471880 to 59472599 719 CpG island CpG island 2963
Tssr108222 11 59472432 to 59472460 28 - TSS region transcription start site region 108222
Tssr108223 11 59472464 to 59472488 24 - TSS region transcription start site region 108223
Gm12263 11 59474287 to 59475765 1478 - pseudogene predicted gene 12263
Gm12262 11 59481973 to 59482277 304 + pseudogene predicted gene 12262
Zkscan17 11 59485520 to 59506640 21120 - protein coding gene zinc finger with KRAB and SCAN domains 17
Tssr108224 11 59490074 to 59490075 1 - TSS region transcription start site region 108224
Tssr108225 11 59500193 to 59500198 5 - TSS region transcription start site region 108225
Cpgi2964 11 59505294 to 59506958 1664 CpG island CpG island 2964
Tssr101798 11 59505636 to 59505683 47 + TSS region transcription start site region 101798
4933439C10Rik 11 59505653 to 59511385 5732 + lncRNA gene RIKEN cDNA 4933439C10 gene
Tssr108226 11 59506199 to 59506239 40 - TSS region transcription start site region 108226
Tssr108227 11 59506294 to 59506299 5 - TSS region transcription start site region 108227
Tssr108228 11 59506392 to 59506408 16 - TSS region transcription start site region 108228
Tssr108229 11 59506419 to 59506442 23 - TSS region transcription start site region 108229
Tssr108230 11 59506445 to 59506456 11 - TSS region transcription start site region 108230
Tssr108231 11 59506526 to 59506597 71 - TSS region transcription start site region 108231
Tssr108232 11 59523724 to 59523727 3 - TSS region transcription start site region 108232
Tssr108233 11 59526619 to 59526660 41 - TSS region transcription start site region 108233
Tssr108234 11 59526691 to 59526711 20 - TSS region transcription start site region 108234
Tssr108235 11 59526858 to 59526885 27 - TSS region transcription start site region 108235
Tssr3513 11 59541400 to 59541446 46 - TSS region transcription start site region 3513
Nlrp3 11 59541569 to 59566956 25387 + protein coding gene NLR family, pyrin domain containing 3
Tssr101799 11 59541578 to 59541591 13 + TSS region transcription start site region 101799
Tssr101800 11 59541601 to 59541615 14 + TSS region transcription start site region 101800
Tssr101801 11 59541654 to 59541666 12 + TSS region transcription start site region 101801
Tssr108236 11 59542503 to 59542543 40 - TSS region transcription start site region 108236
Tssr101802 11 59542627 to 59542644 17 + TSS region transcription start site region 101802
Tssr101803 11 59542666 to 59542677 11 + TSS region transcription start site region 101803
Tssr101804 11 59542701 to 59542726 25 + TSS region transcription start site region 101804
Tssr101805 11 59542730 to 59542747 17 + TSS region transcription start site region 101805
Tssr101806 11 59542748 to 59542775 27 + TSS region transcription start site region 101806
Tssr101807 11 59542799 to 59542810 11 + TSS region transcription start site region 101807
Tssr101808 11 59542881 to 59542892 11 + TSS region transcription start site region 101808
Tssr101809 11 59542961 to 59542967 6 + TSS region transcription start site region 101809
Tssr101810 11 59542983 to 59543001 18 + TSS region transcription start site region 101810
Tssr101811 11 59543014 to 59543031 17 + TSS region transcription start site region 101811
Tssr101812 11 59543032 to 59543039 7 + TSS region transcription start site region 101812
Tssr101813 11 59543040 to 59543058 18 + TSS region transcription start site region 101813
Tssr101814 11 59543062 to 59543071 9 + TSS region transcription start site region 101814
Tssr101815 11 59543355 to 59543364 9 + TSS region transcription start site region 101815
Tssr101816 11 59543572 to 59543607 35 + TSS region transcription start site region 101816
Tssr108237 11 59544124 to 59544160 36 - TSS region transcription start site region 108237
Tssr101817 11 59548509 to 59548523 14 + TSS region transcription start site region 101817
Tssr101818 11 59548565 to 59548575 10 + TSS region transcription start site region 101818
Tssr101819 11 59548636 to 59548647 11 + TSS region transcription start site region 101819
Tssr101820 11 59548649 to 59548686 37 + TSS region transcription start site region 101820
Tssr101821 11 59548948 to 59548967 19 + TSS region transcription start site region 101821
Tssr101822 11 59549209 to 59549218 9 + TSS region transcription start site region 101822
Tssr101823 11 59549640 to 59549648 8 + TSS region transcription start site region 101823
Tssr101824 11 59549741 to 59549753 12 + TSS region transcription start site region 101824
Tssr101825 11 59553505 to 59553508 3 + TSS region transcription start site region 101825
Tssr101826 11 59555917 to 59555922 5 + TSS region transcription start site region 101826
Tssr101827 11 59556228 to 59556239 11 + TSS region transcription start site region 101827
Tssr101828 11 59556241 to 59556257 16 + TSS region transcription start site region 101828
Tssr101829 11 59556310 to 59556326 16 + TSS region transcription start site region 101829
Tssr101830 11 59556337 to 59556347 10 + TSS region transcription start site region 101830
Tssr101831 11 59556397 to 59556411 14 + TSS region transcription start site region 101831
Tssr101832 11 59556421 to 59556432 11 + TSS region transcription start site region 101832
Tssr101833 11 59556472 to 59556482 10 + TSS region transcription start site region 101833
Tssr101834 11 59556488 to 59556500 12 + TSS region transcription start site region 101834
Tssr101835 11 59556526 to 59556538 12 + TSS region transcription start site region 101835
Tssr101836 11 59557341 to 59557355 14 + TSS region transcription start site region 101836
Tssr101837 11 59557361 to 59557372 11 + TSS region transcription start site region 101837
Tssr101838 11 59557374 to 59557392 18 + TSS region transcription start site region 101838
Tssr101839 11 59557487 to 59557503 16 + TSS region transcription start site region 101839
Tssr101840 11 59559028 to 59559032 4 + TSS region transcription start site region 101840
Tssr101841 11 59559111 to 59559159 48 + TSS region transcription start site region 101841
Tssr101842 11 59559264 to 59559280 16 + TSS region transcription start site region 101842
Tssr101843 11 59559730 to 59559742 12 + TSS region transcription start site region 101843
Tssr101844 11 59564605 to 59564619 14 + TSS region transcription start site region 101844
Tssr101845 11 59565922 to 59565940 18 + TSS region transcription start site region 101845
Tssr101846 11 59565975 to 59565986 11 + TSS region transcription start site region 101846
Tssr101847 11 59565988 to 59565997 9 + TSS region transcription start site region 101847
Tssr101848 11 59566154 to 59566177 23 + TSS region transcription start site region 101848
Tssr101849 11 59566263 to 59566307 44 + TSS region transcription start site region 101849
Tssr101850 11 59566320 to 59566343 23 + TSS region transcription start site region 101850
Tssr101851 11 59566347 to 59566356 9 + TSS region transcription start site region 101851
Tssr101852 11 59566378 to 59566391 13 + TSS region transcription start site region 101852
Tssr101853 11 59566399 to 59566414 15 + TSS region transcription start site region 101853
Tssr101854 11 59566416 to 59566427 11 + TSS region transcription start site region 101854
Tssr101855 11 59566487 to 59566501 14 + TSS region transcription start site region 101855
Olfr222 11 59570782 to 59571738 956 - protein coding gene olfactory receptor 222
Cpgi2965 11 59571285 to 59571445 160 CpG island CpG island 2965
Gm12261 11 59577992 to 59578636 644 - pseudogene predicted gene 12261
Olfr223 11 59589128 to 59590087 959 - protein coding gene olfactory receptor 223
Gm5027 11 59602919 to 59603293 374 - pseudogene predicted gene 5027
Olfr225 11 59612966 to 59614225 1259 + polymorphic pseudogene olfactory receptor 225
Tssr101856 11 59634194 to 59634196 2 + TSS region transcription start site region 101856
A630028G03Rik 11 59635492 to 59637735 2243 unclassified gene RIKEN cDNA A630028G03 gene
Gm33998 11 59636742 to 59643374 6632 - lncRNA gene predicted gene, 33998
Tssr108238 11 59644492 to 59644495 3 - TSS region transcription start site region 108238
Cpgi2966 11 59662017 to 59663370 1353 CpG island CpG island 2966
Tssr101857 11 59662471 to 59662543 72 + TSS region transcription start site region 101857
Mprip 11 59662473 to 59780860 118387 + protein coding gene myosin phosphatase Rho interacting protein
Tssr101858 11 59662672 to 59662695 23 + TSS region transcription start site region 101858
Tssr101859 11 59662699 to 59662759 60 + TSS region transcription start site region 101859
Tssr101860 11 59706350 to 59706389 39 + TSS region transcription start site region 101860
1700007J10Rik 11 59725917 to 59740154 14237 - lncRNA gene RIKEN cDNA 1700007J10 gene
Tssr101861 11 59740258 to 59740278 20 + TSS region transcription start site region 101861
Tssr101862 11 59750159 to 59750187 28 + TSS region transcription start site region 101862
Gm12264 11 59775286 to 59780321 5035 - antisense lncRNA gene predicted gene 12264
Pld6 11 59783897 to 59787645 3748 - protein coding gene phospholipase D family, member 6
Cpgi2967 11 59787109 to 59787932 823 CpG island CpG island 2967
Tssr108239 11 59787192 to 59787201 9 - TSS region transcription start site region 108239
Tssr108240 11 59787210 to 59787231 21 - TSS region transcription start site region 108240
Tssr108241 11 59787235 to 59787244 9 - TSS region transcription start site region 108241
Tssr108242 11 59787269 to 59787283 14 - TSS region transcription start site region 108242
Tssr108243 11 59787284 to 59787295 11 - TSS region transcription start site region 108243
Tssr108244 11 59787313 to 59787322 9 - TSS region transcription start site region 108244
Tssr108245 11 59787636 to 59787683 47 - TSS region transcription start site region 108245
Flcn 11 59791408 to 59810016 18608 - protein coding gene folliculin
Cpgi2968 11 59809536 to 59810327 791 CpG island CpG island 2968
Tssr108246 11 59809774 to 59809847 73 - TSS region transcription start site region 108246
Tssr108247 11 59810026 to 59810044 18 - TSS region transcription start site region 108247
Gm16062 11 59810080 to 59818362 8282 + antisense lncRNA gene predicted gene 16062
Tssr101863 11 59810107 to 59810133 26 + TSS region transcription start site region 101863
Tssr101864 11 59810287 to 59810299 12 + TSS region transcription start site region 101864
Tssr101865 11 59810309 to 59810334 25 + TSS region transcription start site region 101865
Gm24939 11 59813137 to 59813273 136 + rRNA gene predicted gene, 24939
Dp(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 chromosomal duplication duplication, Chr 11, James R Lupski 1
Cops3 11 59817795 to 59839837 22042 - protein coding gene COP9 signalosome subunit 3
Del(11Cops3-Gid4)3Jrl 11 59817795 to 60445277 627482 cytogenetic marker deletion, Chr 11, James R Lupski 3
Del(11Cops3-Rnf112)1Jrl 11 59817795 to 61454131 1636336 complex/cluster/region deletion, Chr 11, James R Lupski 1
Del(11Cops3-Gid4)4Jrl 11 59817795 to 60445277 627482 complex/cluster/region deletion, Chr 11, James R Lupski 4
Tssr108248 11 59826956 to 59826965 9 - TSS region transcription start site region 108248
Tssr108249 11 59836923 to 59836941 18 - TSS region transcription start site region 108249
Cpgi2969 11 59839097 to 59839954 857 CpG island CpG island 2969
Tssr108250 11 59839239 to 59839259 20 - TSS region transcription start site region 108250
Tssr108251 11 59839275 to 59839296 21 - TSS region transcription start site region 108251
Tssr101866 11 59839398 to 59839409 11 + TSS region transcription start site region 101866
Tssr108252 11 59839745 to 59839763 18 - TSS region transcription start site region 108252
Tssr108253 11 59839776 to 59839794 18 - TSS region transcription start site region 108253
Tssr108254 11 59839803 to 59839818 15 - TSS region transcription start site region 108254
Tssr108255 11 59839828 to 59839843 15 - TSS region transcription start site region 108255
Nt5m 11 59847506 to 59876533 29027 + protein coding gene 5',3'-nucleotidase, mitochondrial
Cpgi2970 11 59847858 to 59848769 911 CpG island CpG island 2970
Tssr101867 11 59848040 to 59848102 62 + TSS region transcription start site region 101867
Tssr101868 11 59848152 to 59848180 28 + TSS region transcription start site region 101868
Tssr108256 11 59848236 to 59848257 21 - TSS region transcription start site region 108256
Tssr101869 11 59848276 to 59848328 52 + TSS region transcription start site region 101869
Tssr101870 11 59887215 to 59887219 4 + TSS region transcription start site region 101870
Gm12714 11 59898374 to 59907319 8945 + lincRNA gene predicted gene 12714
1810063I02Rik 11 59921499 to 59921889 390 + lincRNA gene RIKEN cDNA 1810063I02 gene
Med9os 11 59946889 to 59948142 1253 - antisense lncRNA gene mediator complex subunit 9, opposite strand
Cpgi2971 11 59947841 to 59948680 839 CpG island CpG island 2971
Tssr108257 11 59948079 to 59948101 22 - TSS region transcription start site region 108257
Tssr108258 11 59948107 to 59948163 56 - TSS region transcription start site region 108258
Tssr108259 11 59948175 to 59948181 6 - TSS region transcription start site region 108259
Med9 11 59948206 to 59962205 13999 + protein coding gene mediator complex subunit 9
Tssr101871 11 59948209 to 59948261 52 + TSS region transcription start site region 101871
Rasd1 11 59963181 to 59964944 1763 - protein coding gene RAS, dexamethasone-induced 1
Cpgi2972 11 59963686 to 59965496 1810 CpG island CpG island 2972
Tssr108260 11 59964911 to 59964922 11 - TSS region transcription start site region 108260
Tssr108261 11 59964936 to 59964951 15 - TSS region transcription start site region 108261
Pemt 11 59970614 to 60046489 75875 - protein coding gene phosphatidylethanolamine N-methyltransferase
Tssr108262 11 59976940 to 59976946 6 - TSS region transcription start site region 108262
Tssr108263 11 59983499 to 59983522 23 - TSS region transcription start site region 108263
Gm38498 11 60020769 to 60026954 6185 - lncRNA gene predicted gene, 38498
Tssr108264 11 60021218 to 60021231 13 - TSS region transcription start site region 108264
Tssr108265 11 60031828 to 60031837 9 - TSS region transcription start site region 108265
Tssr108266 11 60031847 to 60031869 22 - TSS region transcription start site region 108266
Tssr108267 11 60031874 to 60031891 17 - TSS region transcription start site region 108267
Tssr108268 11 60031902 to 60031914 12 - TSS region transcription start site region 108268
Tssr108269 11 60036863 to 60036914 51 - TSS region transcription start site region 108269
Tssr108270 11 60036917 to 60036992 75 - TSS region transcription start site region 108270
Cpgi2973 11 60046088 to 60046617 529 CpG island CpG island 2973
Tssr108271 11 60046478 to 60046532 54 - TSS region transcription start site region 108271
Tssr101872 11 60074433 to 60074434 1 + TSS region transcription start site region 101872
Cpgi2974 11 60088368 to 60088545 177 CpG island CpG island 2974
Gm27511 11 60099547 to 60099673 126 + unclassified non-coding RNA gene predicted gene, 27511
Tssr108272 11 60099973 to 60099993 20 - TSS region transcription start site region 108272
Tssr108273 11 60099999 to 60100019 20 - TSS region transcription start site region 108273