Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:59210369-59540773

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2310033P09Rik 11 59208361 to 59210736 2375 + protein coding gene RIKEN cDNA 2310033P09 gene
Arf1 11 59211412 to 59228267 16855 - protein coding gene ADP-ribosylation factor 1
Tssr108212 11 59212511 to 59212535 24 - TSS region transcription start site region 108212
Tssr108213 11 59212666 to 59212688 22 - TSS region transcription start site region 108213
Cpgi2956 11 59227302 to 59229044 1742 CpG island CpG island 2956
Tssr108214 11 59227879 to 59227930 51 - TSS region transcription start site region 108214
Tssr108215 11 59228208 to 59228247 39 - TSS region transcription start site region 108215
Tssr101793 11 59228392 to 59228397 5 + TSS region transcription start site region 101793
Wnt3a 11 59248036 to 59290751 42715 - protein coding gene wingless-type MMTV integration site family, member 3A
Cpgi2957 11 59249583 to 59250100 517 CpG island CpG island 2957
Cpgi2958 11 59263748 to 59264652 904 CpG island CpG island 2958
Cpgi2959 11 59288689 to 59291376 2687 CpG island CpG island 2959
Tssr108216 11 59290746 to 59290758 12 - TSS region transcription start site region 108216
Cpgi2960 11 59305995 to 59308371 2376 CpG island CpG island 2960
Tssr101794 11 59306920 to 59306935 15 + TSS region transcription start site region 101794
Wnt9a 11 59306928 to 59333552 26624 + protein coding gene wingless-type MMTV integration site family, member 9A
Tssr101795 11 59319680 to 59319685 5 + TSS region transcription start site region 101795
Tssr3512 11 59331388 to 59331391 3 + TSS region transcription start site region 3512
Gm24756 11 59337051 to 59337146 95 - miRNA gene predicted gene, 24756
D11Mit316 11 59365791 to 59365904 113 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 316
Sluc36 11 59365791 to 69591873 10226082 QTL susceptibility to lung cancer 36
Sluc36a 11 59365791 to 59365904 113 QTL susceptibility to lung cancer 36a
Sluc36b 11 59365791 to 59365904 113 QTL susceptibility to lung cancer 36b
Prss38 11 59372669 to 59375657 2988 - protein coding gene protease, serine 38
Cpgi2961 11 59375369 to 59375773 404 CpG island CpG island 2961
Gm15755 11 59375461 to 59379905 4444 + antisense lncRNA gene predicted gene 15755
Snap47 11 59407141 to 59450034 42893 - protein coding gene synaptosomal-associated protein, 47
Tssr108217 11 59413088 to 59413095 7 - TSS region transcription start site region 108217
Tssr108218 11 59421620 to 59421636 16 - TSS region transcription start site region 108218
Tssr108219 11 59430117 to 59430121 4 - TSS region transcription start site region 108219
Cpgi2962 11 59449459 to 59450721 1262 CpG island CpG island 2962
Tssr108220 11 59449941 to 59449950 9 - TSS region transcription start site region 108220
Tssr108221 11 59449953 to 59450035 82 - TSS region transcription start site region 108221
Tssr101796 11 59450040 to 59450095 55 + TSS region transcription start site region 101796
Jmjd4 11 59450045 to 59458567 8522 + protein coding gene jumonji domain containing 4
Tssr101797 11 59450130 to 59450140 10 + TSS region transcription start site region 101797
Zfp867 11 59461197 to 59472474 11277 - protein coding gene zinc finger protein 867
Cpgi2963 11 59471880 to 59472599 719 CpG island CpG island 2963
Tssr108222 11 59472432 to 59472460 28 - TSS region transcription start site region 108222
Tssr108223 11 59472464 to 59472488 24 - TSS region transcription start site region 108223
Gm12263 11 59474287 to 59475765 1478 - pseudogene predicted gene 12263
Gm12262 11 59481973 to 59482277 304 + pseudogene predicted gene 12262
Zkscan17 11 59485520 to 59506640 21120 - protein coding gene zinc finger with KRAB and SCAN domains 17
Tssr108224 11 59490074 to 59490075 1 - TSS region transcription start site region 108224
Tssr108225 11 59500193 to 59500198 5 - TSS region transcription start site region 108225
Cpgi2964 11 59505294 to 59506958 1664 CpG island CpG island 2964
Tssr101798 11 59505636 to 59505683 47 + TSS region transcription start site region 101798
4933439C10Rik 11 59505653 to 59511385 5732 + lncRNA gene RIKEN cDNA 4933439C10 gene
Tssr108226 11 59506199 to 59506239 40 - TSS region transcription start site region 108226
Tssr108227 11 59506294 to 59506299 5 - TSS region transcription start site region 108227
Tssr108228 11 59506392 to 59506408 16 - TSS region transcription start site region 108228
Tssr108229 11 59506419 to 59506442 23 - TSS region transcription start site region 108229
Tssr108230 11 59506445 to 59506456 11 - TSS region transcription start site region 108230
Tssr108231 11 59506526 to 59506597 71 - TSS region transcription start site region 108231
Tssr108232 11 59523724 to 59523727 3 - TSS region transcription start site region 108232
Tssr108233 11 59526619 to 59526660 41 - TSS region transcription start site region 108233
Tssr108234 11 59526691 to 59526711 20 - TSS region transcription start site region 108234
Tssr108235 11 59526858 to 59526885 27 - TSS region transcription start site region 108235