Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:59087810-59277833

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obscn 11 58994256 to 59136375 142119 - protein coding gene obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
Tssr101785 11 59116459 to 59116460 1 + TSS region transcription start site region 101785
Tssr108196 11 59120925 to 59120962 37 - TSS region transcription start site region 108196
Cpgi2950 11 59134387 to 59136471 2084 CpG island CpG island 2950
Tssr108197 11 59139247 to 59139280 33 - TSS region transcription start site region 108197
Iba57 11 59155369 to 59163739 8370 - protein coding gene IBA57 homolog, iron-sulfur cluster assembly
Cpgi2951 11 59163103 to 59164080 977 CpG island CpG island 2951
Tssr108198 11 59163281 to 59163323 42 - TSS region transcription start site region 108198
Tssr108199 11 59163696 to 59163726 30 - TSS region transcription start site region 108199
Tssr108200 11 59163759 to 59163788 29 - TSS region transcription start site region 108200
Tssr108201 11 59164527 to 59164548 21 - TSS region transcription start site region 108201
Gjc2 11 59175568 to 59183213 7645 - protein coding gene gap junction protein, gamma 2
Cpgi2952 11 59175783 to 59177833 2050 CpG island CpG island 2952
Tssr108202 11 59182794 to 59182801 7 - TSS region transcription start site region 108202
Tssr108203 11 59182810 to 59182833 23 - TSS region transcription start site region 108203
Guk1 11 59183875 to 59192212 8337 - protein coding gene guanylate kinase 1
Tssr108204 11 59187738 to 59187767 29 - TSS region transcription start site region 108204
Cpgi2953 11 59191431 to 59192269 838 CpG island CpG island 2953
Tssr108205 11 59191791 to 59191843 52 - TSS region transcription start site region 108205
Tssr101786 11 59192129 to 59192145 16 + TSS region transcription start site region 101786
2610507I01Rik 11 59199836 to 59202385 2549 - lncRNA gene RIKEN cDNA 2610507I01 gene
Tssr108206 11 59201682 to 59201697 15 - TSS region transcription start site region 108206
Tssr108207 11 59201712 to 59201739 27 - TSS region transcription start site region 108207
Cpgi2954 11 59202026 to 59202970 944 CpG island CpG island 2954
Tssr108208 11 59202141 to 59202154 13 - TSS region transcription start site region 108208
Tssr108209 11 59202169 to 59202209 40 - TSS region transcription start site region 108209
Tssr108210 11 59202376 to 59202394 18 - TSS region transcription start site region 108210
Tssr101787 11 59202480 to 59202529 49 + TSS region transcription start site region 101787
Mrpl55 11 59202486 to 59206134 3648 + protein coding gene mitochondrial ribosomal protein L55
Tssr101788 11 59204624 to 59204672 48 + TSS region transcription start site region 101788
Cpgi2955 11 59207947 to 59209400 1453 CpG island CpG island 2955
Gm10434 11 59208246 to 59208720 474 - pseudogene predicted gene 10434
Tssr101789 11 59208329 to 59208355 26 + TSS region transcription start site region 101789
Tssr101790 11 59208357 to 59208419 62 + TSS region transcription start site region 101790
2310033P09Rik 11 59208361 to 59210736 2375 + protein coding gene RIKEN cDNA 2310033P09 gene
Tssr108211 11 59208664 to 59208680 16 - TSS region transcription start site region 108211
Tssr101791 11 59208794 to 59208799 5 + TSS region transcription start site region 101791
Tssr101792 11 59209123 to 59209164 41 + TSS region transcription start site region 101792
Arf1 11 59211412 to 59228267 16855 - protein coding gene ADP-ribosylation factor 1
Tssr108212 11 59212511 to 59212535 24 - TSS region transcription start site region 108212
Tssr108213 11 59212666 to 59212688 22 - TSS region transcription start site region 108213
Cpgi2956 11 59227302 to 59229044 1742 CpG island CpG island 2956
Tssr108214 11 59227879 to 59227930 51 - TSS region transcription start site region 108214
Tssr108215 11 59228208 to 59228247 39 - TSS region transcription start site region 108215
Tssr101793 11 59228392 to 59228397 5 + TSS region transcription start site region 101793
Wnt3a 11 59248036 to 59290751 42715 - protein coding gene wingless-type MMTV integration site family, member 3A
Cpgi2957 11 59249583 to 59250100 517 CpG island CpG island 2957
Cpgi2958 11 59263748 to 59264652 904 CpG island CpG island 2958