Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:58961998-59002165

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim17 11 58954702 to 58973097 18395 + protein coding gene tripartite motif-containing 17
Cpgi2944 11 58961668 to 58962448 780 CpG island CpG island 2944
Gm12260 11 58961812 to 58962222 410 + pseudogene predicted gene 12260
Cpgi2945 11 58963641 to 58963899 258 CpG island CpG island 2945
Tssr101770 11 58963761 to 58963771 10 + TSS region transcription start site region 101770
Tssr101771 11 58963774 to 58963785 11 + TSS region transcription start site region 101771
Tssr101772 11 58963790 to 58963807 17 + TSS region transcription start site region 101772
Tssr101773 11 58963823 to 58963829 6 + TSS region transcription start site region 101773
2310058D17Rik 11 58965748 to 58978050 12302 - unclassified non-coding RNA gene RIKEN cDNA 2310058D17 gene
D11Mit369 11 58969991 to 58970113 122 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-369
Gm39828 11 58972450 to 58977210 4760 - lncRNA gene predicted gene, 39828
Tssr101774 11 58974601 to 58974628 27 + TSS region transcription start site region 101774
Tssr101775 11 58974660 to 58974668 8 + TSS region transcription start site region 101775
Cpgi2946 11 58977089 to 58979104 2015 CpG island CpG island 2946
Tssr101776 11 58977578 to 58977612 34 + TSS region transcription start site region 101776
Tssr108184 11 58978010 to 58978065 55 - TSS region transcription start site region 108184
Tssr101777 11 58978093 to 58978149 56 + TSS region transcription start site region 101777
Trim11 11 58978093 to 58991458 13365 + protein coding gene tripartite motif-containing 11
Tssr101778 11 58978410 to 58978421 11 + TSS region transcription start site region 101778
Cpgi2947 11 58981998 to 58982165 167 CpG island CpG island 2947
Tssr101779 11 58982120 to 58982141 21 + TSS region transcription start site region 101779
Tssr101780 11 58982162 to 58982189 27 + TSS region transcription start site region 101780
Tssr108185 11 58991740 to 58991765 25 - TSS region transcription start site region 108185
Cpgi2948 11 58994244 to 58994804 560 CpG island CpG island 2948
Obscn 11 58994256 to 59136375 142119 - protein coding gene obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
Tssr108186 11 58999220 to 58999237 17 - TSS region transcription start site region 108186
Tssr108187 11 58999238 to 58999281 43 - TSS region transcription start site region 108187
Tssr101781 11 58999359 to 58999370 11 + TSS region transcription start site region 101781
Tssr108188 11 58999362 to 58999407 45 - TSS region transcription start site region 108188