Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:58886412-59553267

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202 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp39 11 58888153 to 58904225 16072 - protein coding gene zinc finger protein 39
Tssr108174 11 58889298 to 58889301 3 - TSS region transcription start site region 108174
Gm12256 11 58889710 to 58891548 1838 + antisense lncRNA gene predicted gene 12256
Tssr108175 11 58889713 to 58889726 13 - TSS region transcription start site region 108175
Tssr101759 11 58893703 to 58893710 7 + TSS region transcription start site region 101759
Cpgi2937 11 58903766 to 58904439 673 CpG island CpG island 2937
Tssr108176 11 58904145 to 58904157 12 - TSS region transcription start site region 108176
Tssr108177 11 58904158 to 58904168 10 - TSS region transcription start site region 108177
Tssr108178 11 58904173 to 58904217 44 - TSS region transcription start site region 108178
Tssr108179 11 58904219 to 58904236 17 - TSS region transcription start site region 108179
Gm12257 11 58904402 to 58906170 1768 + antisense lncRNA gene predicted gene 12257
Cpgi2938 11 58914323 to 58914496 173 CpG island CpG island 2938
Btnl10 11 58917877 to 58926965 9088 + protein coding gene butyrophilin-like 10
Tssr101760 11 58917889 to 58917915 26 + TSS region transcription start site region 101760
Tssr101761 11 58917946 to 58917962 16 + TSS region transcription start site region 101761
Tssr101762 11 58917973 to 58918002 29 + TSS region transcription start site region 101762
Tssr101763 11 58918004 to 58918015 11 + TSS region transcription start site region 101763
Tssr101764 11 58926188 to 58926200 12 + TSS region transcription start site region 101764
Tssr108180 11 58928480 to 58928491 11 - TSS region transcription start site region 108180
Rnf187 11 58932288 to 58938906 6618 - protein coding gene ring finger protein 187
Tssr108181 11 58933256 to 58933295 39 - TSS region transcription start site region 108181
Cpgi2939 11 58938072 to 58939230 1158 CpG island CpG island 2939
Tssr108182 11 58938851 to 58938923 72 - TSS region transcription start site region 108182
Cpgi2940 11 58948171 to 58949370 1199 CpG island CpG island 2940
Tssr101765 11 58948890 to 58948920 30 + TSS region transcription start site region 101765
Hist3h2ba 11 58948911 to 58949372 461 + protein coding gene histone cluster 3, H2ba
Cpgi2941 11 58953762 to 58954282 520 CpG island CpG island 2941
Hist3h2bb-ps 11 58954048 to 58954512 464 - pseudogene histone cluster 3, H2bb, pseudogene
Cpgi2942 11 58954359 to 58955420 1061 CpG island CpG island 2942
Tssr108183 11 58954441 to 58954459 18 - TSS region transcription start site region 108183
Tssr101766 11 58954675 to 58954696 21 + TSS region transcription start site region 101766
Hist3h2a 11 58954685 to 58955192 507 + protein coding gene histone cluster 3, H2a
Trim17 11 58954702 to 58973097 18395 + protein coding gene tripartite motif-containing 17
Tssr101767 11 58954718 to 58954729 11 + TSS region transcription start site region 101767
Gm44313 11 58954983 to 58955120 137 - miRNA gene predicted gene, 44313
Cpgi2943 11 58959859 to 58960535 676 CpG island CpG island 2943
Cpgi2944 11 58961668 to 58962448 780 CpG island CpG island 2944
Tssr101768 11 58961765 to 58961780 15 + TSS region transcription start site region 101768
Gm12260 11 58961812 to 58962222 410 + pseudogene predicted gene 12260
Tssr101769 11 58961910 to 58961933 23 + TSS region transcription start site region 101769
Cpgi2945 11 58963641 to 58963899 258 CpG island CpG island 2945
Tssr101770 11 58963761 to 58963771 10 + TSS region transcription start site region 101770
Tssr101771 11 58963774 to 58963785 11 + TSS region transcription start site region 101771
Tssr101772 11 58963790 to 58963807 17 + TSS region transcription start site region 101772
Tssr101773 11 58963823 to 58963829 6 + TSS region transcription start site region 101773
2310058D17Rik 11 58965748 to 58978050 12302 - unclassified non-coding RNA gene RIKEN cDNA 2310058D17 gene
D11Mit369 11 58969991 to 58970113 122 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-369
Gm39828 11 58972450 to 58977210 4760 - lncRNA gene predicted gene, 39828
Tssr101774 11 58974601 to 58974628 27 + TSS region transcription start site region 101774
Tssr101775 11 58974660 to 58974668 8 + TSS region transcription start site region 101775
Cpgi2946 11 58977089 to 58979104 2015 CpG island CpG island 2946
Tssr101776 11 58977578 to 58977612 34 + TSS region transcription start site region 101776
Tssr108184 11 58978010 to 58978065 55 - TSS region transcription start site region 108184
Trim11 11 58978093 to 58991458 13365 + protein coding gene tripartite motif-containing 11
Tssr101777 11 58978093 to 58978149 56 + TSS region transcription start site region 101777
Tssr101778 11 58978410 to 58978421 11 + TSS region transcription start site region 101778
Cpgi2947 11 58981998 to 58982165 167 CpG island CpG island 2947
Tssr101779 11 58982120 to 58982141 21 + TSS region transcription start site region 101779
Tssr101780 11 58982162 to 58982189 27 + TSS region transcription start site region 101780
Tssr108185 11 58991740 to 58991765 25 - TSS region transcription start site region 108185
Cpgi2948 11 58994244 to 58994804 560 CpG island CpG island 2948
Obscn 11 58994256 to 59136375 142119 - protein coding gene obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
Tssr108186 11 58999220 to 58999237 17 - TSS region transcription start site region 108186
Tssr108187 11 58999238 to 58999281 43 - TSS region transcription start site region 108187
Tssr101781 11 58999359 to 58999370 11 + TSS region transcription start site region 101781
Tssr108188 11 58999362 to 58999407 45 - TSS region transcription start site region 108188
Tssr108189 11 59002182 to 59002193 11 - TSS region transcription start site region 108189
Tssr108190 11 59002198 to 59002231 33 - TSS region transcription start site region 108190
Tssr108191 11 59002355 to 59002366 11 - TSS region transcription start site region 108191
Tssr108192 11 59002374 to 59002385 11 - TSS region transcription start site region 108192
Tssr108193 11 59002391 to 59002401 10 - TSS region transcription start site region 108193
Tssr108194 11 59002421 to 59002449 28 - TSS region transcription start site region 108194
Gm10435 11 59002910 to 59007293 4383 + antisense lncRNA gene predicted gene 10435
Tssr101782 11 59002920 to 59002950 30 + TSS region transcription start site region 101782
Tssr101783 11 59002957 to 59002969 12 + TSS region transcription start site region 101783
Tssr101784 11 59002974 to 59002981 7 + TSS region transcription start site region 101784
Cpgi2949 11 59044818 to 59045092 274 CpG island CpG island 2949
Tssr108195 11 59084247 to 59084250 3 - TSS region transcription start site region 108195
Tssr101785 11 59116459 to 59116460 1 + TSS region transcription start site region 101785
Tssr108196 11 59120925 to 59120962 37 - TSS region transcription start site region 108196
Cpgi2950 11 59134387 to 59136471 2084 CpG island CpG island 2950
Tssr108197 11 59139247 to 59139280 33 - TSS region transcription start site region 108197
Iba57 11 59155369 to 59163739 8370 - protein coding gene IBA57 homolog, iron-sulfur cluster assembly
Cpgi2951 11 59163103 to 59164080 977 CpG island CpG island 2951
Tssr108198 11 59163281 to 59163323 42 - TSS region transcription start site region 108198
Tssr108199 11 59163696 to 59163726 30 - TSS region transcription start site region 108199
Tssr108200 11 59163759 to 59163788 29 - TSS region transcription start site region 108200
Tssr108201 11 59164527 to 59164548 21 - TSS region transcription start site region 108201
Gjc2 11 59175568 to 59183213 7645 - protein coding gene gap junction protein, gamma 2
Cpgi2952 11 59175783 to 59177833 2050 CpG island CpG island 2952
Tssr108202 11 59182794 to 59182801 7 - TSS region transcription start site region 108202
Tssr108203 11 59182810 to 59182833 23 - TSS region transcription start site region 108203
Guk1 11 59183875 to 59192212 8337 - protein coding gene guanylate kinase 1
Tssr108204 11 59187738 to 59187767 29 - TSS region transcription start site region 108204
Cpgi2953 11 59191431 to 59192269 838 CpG island CpG island 2953
Tssr108205 11 59191791 to 59191843 52 - TSS region transcription start site region 108205
Tssr101786 11 59192129 to 59192145 16 + TSS region transcription start site region 101786
2610507I01Rik 11 59199836 to 59202385 2549 - lncRNA gene RIKEN cDNA 2610507I01 gene
Tssr108206 11 59201682 to 59201697 15 - TSS region transcription start site region 108206
Tssr108207 11 59201712 to 59201739 27 - TSS region transcription start site region 108207
Cpgi2954 11 59202026 to 59202970 944 CpG island CpG island 2954
Tssr108208 11 59202141 to 59202154 13 - TSS region transcription start site region 108208
Tssr108209 11 59202169 to 59202209 40 - TSS region transcription start site region 108209
Tssr108210 11 59202376 to 59202394 18 - TSS region transcription start site region 108210
Tssr101787 11 59202480 to 59202529 49 + TSS region transcription start site region 101787
Mrpl55 11 59202486 to 59206134 3648 + protein coding gene mitochondrial ribosomal protein L55
Tssr101788 11 59204624 to 59204672 48 + TSS region transcription start site region 101788
Cpgi2955 11 59207947 to 59209400 1453 CpG island CpG island 2955
Gm10434 11 59208246 to 59208720 474 - pseudogene predicted gene 10434
Tssr101789 11 59208329 to 59208355 26 + TSS region transcription start site region 101789
Tssr101790 11 59208357 to 59208419 62 + TSS region transcription start site region 101790
2310033P09Rik 11 59208361 to 59210736 2375 + protein coding gene RIKEN cDNA 2310033P09 gene
Tssr108211 11 59208664 to 59208680 16 - TSS region transcription start site region 108211
Tssr101791 11 59208794 to 59208799 5 + TSS region transcription start site region 101791
Tssr101792 11 59209123 to 59209164 41 + TSS region transcription start site region 101792
Arf1 11 59211412 to 59228267 16855 - protein coding gene ADP-ribosylation factor 1
Tssr108212 11 59212511 to 59212535 24 - TSS region transcription start site region 108212
Tssr108213 11 59212666 to 59212688 22 - TSS region transcription start site region 108213
Cpgi2956 11 59227302 to 59229044 1742 CpG island CpG island 2956
Tssr108214 11 59227879 to 59227930 51 - TSS region transcription start site region 108214
Tssr108215 11 59228208 to 59228247 39 - TSS region transcription start site region 108215
Tssr101793 11 59228392 to 59228397 5 + TSS region transcription start site region 101793
Wnt3a 11 59248036 to 59290751 42715 - protein coding gene wingless-type MMTV integration site family, member 3A
Cpgi2957 11 59249583 to 59250100 517 CpG island CpG island 2957
Cpgi2958 11 59263748 to 59264652 904 CpG island CpG island 2958
Cpgi2959 11 59288689 to 59291376 2687 CpG island CpG island 2959
Tssr108216 11 59290746 to 59290758 12 - TSS region transcription start site region 108216
Cpgi2960 11 59305995 to 59308371 2376 CpG island CpG island 2960
Tssr101794 11 59306920 to 59306935 15 + TSS region transcription start site region 101794
Wnt9a 11 59306928 to 59333552 26624 + protein coding gene wingless-type MMTV integration site family, member 9A
Tssr101795 11 59319680 to 59319685 5 + TSS region transcription start site region 101795
Tssr3512 11 59331388 to 59331391 3 + TSS region transcription start site region 3512
Gm24756 11 59337051 to 59337146 95 - miRNA gene predicted gene, 24756
Sluc36a 11 59365791 to 59365904 113 QTL susceptibility to lung cancer 36a
D11Mit316 11 59365791 to 59365904 113 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 316
Sluc36b 11 59365791 to 59365904 113 QTL susceptibility to lung cancer 36b
Sluc36 11 59365791 to 69591873 10226082 QTL susceptibility to lung cancer 36
Prss38 11 59372669 to 59375657 2988 - protein coding gene protease, serine 38
Cpgi2961 11 59375369 to 59375773 404 CpG island CpG island 2961
Gm15755 11 59375461 to 59379905 4444 + antisense lncRNA gene predicted gene 15755
Snap47 11 59407141 to 59450034 42893 - protein coding gene synaptosomal-associated protein, 47
Tssr108217 11 59413088 to 59413095 7 - TSS region transcription start site region 108217
Tssr108218 11 59421620 to 59421636 16 - TSS region transcription start site region 108218
Tssr108219 11 59430117 to 59430121 4 - TSS region transcription start site region 108219
Cpgi2962 11 59449459 to 59450721 1262 CpG island CpG island 2962
Tssr108220 11 59449941 to 59449950 9 - TSS region transcription start site region 108220
Tssr108221 11 59449953 to 59450035 82 - TSS region transcription start site region 108221
Tssr101796 11 59450040 to 59450095 55 + TSS region transcription start site region 101796
Jmjd4 11 59450045 to 59458567 8522 + protein coding gene jumonji domain containing 4
Tssr101797 11 59450130 to 59450140 10 + TSS region transcription start site region 101797
Zfp867 11 59461197 to 59472474 11277 - protein coding gene zinc finger protein 867
Cpgi2963 11 59471880 to 59472599 719 CpG island CpG island 2963
Tssr108222 11 59472432 to 59472460 28 - TSS region transcription start site region 108222
Tssr108223 11 59472464 to 59472488 24 - TSS region transcription start site region 108223
Gm12263 11 59474287 to 59475765 1478 - pseudogene predicted gene 12263
Gm12262 11 59481973 to 59482277 304 + pseudogene predicted gene 12262
Zkscan17 11 59485520 to 59506640 21120 - protein coding gene zinc finger with KRAB and SCAN domains 17
Tssr108224 11 59490074 to 59490075 1 - TSS region transcription start site region 108224
Tssr108225 11 59500193 to 59500198 5 - TSS region transcription start site region 108225
Cpgi2964 11 59505294 to 59506958 1664 CpG island CpG island 2964
Tssr101798 11 59505636 to 59505683 47 + TSS region transcription start site region 101798
4933439C10Rik 11 59505653 to 59511385 5732 + lncRNA gene RIKEN cDNA 4933439C10 gene
Tssr108226 11 59506199 to 59506239 40 - TSS region transcription start site region 108226
Tssr108227 11 59506294 to 59506299 5 - TSS region transcription start site region 108227
Tssr108228 11 59506392 to 59506408 16 - TSS region transcription start site region 108228
Tssr108229 11 59506419 to 59506442 23 - TSS region transcription start site region 108229
Tssr108230 11 59506445 to 59506456 11 - TSS region transcription start site region 108230
Tssr108231 11 59506526 to 59506597 71 - TSS region transcription start site region 108231
Tssr108232 11 59523724 to 59523727 3 - TSS region transcription start site region 108232
Tssr108233 11 59526619 to 59526660 41 - TSS region transcription start site region 108233
Tssr108234 11 59526691 to 59526711 20 - TSS region transcription start site region 108234
Tssr108235 11 59526858 to 59526885 27 - TSS region transcription start site region 108235
Tssr3513 11 59541400 to 59541446 46 - TSS region transcription start site region 3513
Nlrp3 11 59541569 to 59566956 25387 + protein coding gene NLR family, pyrin domain containing 3
Tssr101799 11 59541578 to 59541591 13 + TSS region transcription start site region 101799
Tssr101800 11 59541601 to 59541615 14 + TSS region transcription start site region 101800
Tssr101801 11 59541654 to 59541666 12 + TSS region transcription start site region 101801
Tssr108236 11 59542503 to 59542543 40 - TSS region transcription start site region 108236
Tssr101802 11 59542627 to 59542644 17 + TSS region transcription start site region 101802
Tssr101803 11 59542666 to 59542677 11 + TSS region transcription start site region 101803
Tssr101804 11 59542701 to 59542726 25 + TSS region transcription start site region 101804
Tssr101805 11 59542730 to 59542747 17 + TSS region transcription start site region 101805
Tssr101806 11 59542748 to 59542775 27 + TSS region transcription start site region 101806
Tssr101807 11 59542799 to 59542810 11 + TSS region transcription start site region 101807
Tssr101808 11 59542881 to 59542892 11 + TSS region transcription start site region 101808
Tssr101809 11 59542961 to 59542967 6 + TSS region transcription start site region 101809
Tssr101810 11 59542983 to 59543001 18 + TSS region transcription start site region 101810
Tssr101811 11 59543014 to 59543031 17 + TSS region transcription start site region 101811
Tssr101812 11 59543032 to 59543039 7 + TSS region transcription start site region 101812
Tssr101813 11 59543040 to 59543058 18 + TSS region transcription start site region 101813
Tssr101814 11 59543062 to 59543071 9 + TSS region transcription start site region 101814
Tssr101815 11 59543355 to 59543364 9 + TSS region transcription start site region 101815
Tssr101816 11 59543572 to 59543607 35 + TSS region transcription start site region 101816
Tssr108237 11 59544124 to 59544160 36 - TSS region transcription start site region 108237
Tssr101817 11 59548509 to 59548523 14 + TSS region transcription start site region 101817
Tssr101818 11 59548565 to 59548575 10 + TSS region transcription start site region 101818
Tssr101819 11 59548636 to 59548647 11 + TSS region transcription start site region 101819
Tssr101820 11 59548649 to 59548686 37 + TSS region transcription start site region 101820
Tssr101821 11 59548948 to 59548967 19 + TSS region transcription start site region 101821
Tssr101822 11 59549209 to 59549218 9 + TSS region transcription start site region 101822