Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:58385465-58907404

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lypd8 11 58379032 to 58390541 11509 + protein coding gene LY6/PLAUR domain containing 8
Tssr101739 11 58386723 to 58386761 38 + TSS region transcription start site region 101739
Tssr108157 11 58386770 to 58386804 34 - TSS region transcription start site region 108157
Tssr101740 11 58386787 to 58386806 19 + TSS region transcription start site region 101740
Tssr101741 11 58386815 to 58386824 9 + TSS region transcription start site region 101741
Tssr108158 11 58386822 to 58386836 14 - TSS region transcription start site region 108158
Tssr101742 11 58390088 to 58390135 47 + TSS region transcription start site region 101742
Tssr108159 11 58390151 to 58390158 7 - TSS region transcription start site region 108159
Tssr101743 11 58390157 to 58390234 77 + TSS region transcription start site region 101743
Tssr108160 11 58390164 to 58390178 14 - TSS region transcription start site region 108160
Tssr108161 11 58390229 to 58390257 28 - TSS region transcription start site region 108161
Tssr101744 11 58390239 to 58390250 11 + TSS region transcription start site region 101744
Tssr108162 11 58390258 to 58390289 31 - TSS region transcription start site region 108162
Tssr101745 11 58390268 to 58390291 23 + TSS region transcription start site region 101745
Tssr3508 11 58390307 to 58390320 13 - TSS region transcription start site region 3508
Tssr101746 11 58390617 to 58390649 32 + TSS region transcription start site region 101746
Gm12251 11 58392769 to 58393560 791 - pseudogene predicted gene 12251
Tssr101747 11 58393924 to 58393934 10 + TSS region transcription start site region 101747
Gm12252 11 58396297 to 58396515 218 - pseudogene predicted gene 12252
Tssr3509 11 58421080 to 58421087 7 + TSS region transcription start site region 3509
Tssr101748 11 58421103 to 58421118 15 + TSS region transcription start site region 101748
1810065E05Rik 11 58421111 to 58426023 4912 + protein coding gene RIKEN cDNA 1810065E05 gene
Tssr3510 11 58421124 to 58421151 27 + TSS region transcription start site region 3510
Tssr3511 11 58421671 to 58421672 1 + TSS region transcription start site region 3511
Gm12253 11 58432559 to 58441622 9063 + protein coding gene predicted gene 12253
Lypd9 11 58446149 to 58452923 6774 - protein coding gene LY6/PLAUR domain containing 9
Tssr108163 11 58452919 to 58452950 31 - TSS region transcription start site region 108163
Olfr30 11 58454915 to 58455980 1065 - protein coding gene olfactory receptor 30
Olfr333-ps1 11 58477337 to 58478259 922 - pseudogene olfactory receptor 333, pseudogene 1
Olfr332 11 58489719 to 58492499 2780 - protein coding gene olfactory receptor 332
Olfr331 11 58501598 to 58502572 974 - protein coding gene olfactory receptor 331
Gm21927 11 58507463 to 58533100 25637 - pseudogene predicted gene, 21927
Gm12254 11 58508791 to 58509261 470 - pseudogene predicted gene 12254
Olfr330 11 58528929 to 58534825 5896 - protein coding gene olfactory receptor 330
Gm12255 11 58532820 to 58533103 283 - pseudogene predicted gene 12255
Olfr329-ps 11 58542447 to 58543483 1036 - protein coding gene olfactory receptor 329, pseudogene
Olfr328 11 58551305 to 58552237 932 - protein coding gene olfactory receptor 328
Olfr224 11 58566399 to 58567343 944 - protein coding gene olfactory receptor 224
Tssr108164 11 58570559 to 58570573 14 - TSS region transcription start site region 108164
Olfr326-ps1 11 58574997 to 58575352 355 - pseudogene olfactory receptor 326, pseudogene 1
Olfr325 11 58580837 to 58581877 1040 + protein coding gene olfactory receptor 325
Olfr324 11 58597345 to 58598466 1121 + protein coding gene olfactory receptor 324
Eae45 11 58599729 to 74863932 16264203 QTL experimental allergic encephalomyelitis susceptibility 45
D11Mit208 11 58599729 to 58599857 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 208
nmf420 11 58599729 to 76963931 18364202 heritable phenotypic marker neuroscience mutagenesis facility, 420
2210407C18Rik 11 58608204 to 58613492 5288 - protein coding gene RIKEN cDNA 2210407C18 gene
Tssr108165 11 58611477 to 58611500 23 - TSS region transcription start site region 108165
Tssr108166 11 58612089 to 58612103 14 - TSS region transcription start site region 108166
Tssr108167 11 58612556 to 58612582 26 - TSS region transcription start site region 108167
Tssr108168 11 58613481 to 58613495 14 - TSS region transcription start site region 108168
Ity2 11 58617204 to 87804412 29187208 QTL immunity to S. typhimurium 2
D11Mit112 11 58617204 to 58617286 82 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 112
Olfr323 11 58625073 to 58626044 971 - protein coding gene olfactory receptor 323
Cpgi2930 11 58640330 to 58641143 813 CpG island CpG island 2930
Tssr101749 11 58640394 to 58640430 36 + TSS region transcription start site region 101749
Trim58 11 58640465 to 58652404 11939 + protein coding gene tripartite motif-containing 58
Cpgi2931 11 58651316 to 58651603 287 CpG island CpG island 2931
Gm22599 11 58661178 to 58661309 131 + snoRNA gene predicted gene, 22599
Olfr322 11 58665561 to 58666544 983 + protein coding gene olfactory receptor 322
Cpgi2932 11 58666040 to 58666304 264 CpG island CpG island 2932
Olfr320 11 58683875 to 58684795 920 + protein coding gene olfactory receptor 320
Gm12570 11 58688073 to 58689102 1029 - pseudogene predicted gene 12570
Olfr319 11 58701703 to 58702623 920 + protein coding gene olfactory receptor 319
Olfr318 11 58720069 to 58721094 1025 - protein coding gene olfactory receptor 318
Olfr317 11 58732096 to 58733223 1127 - protein coding gene olfactory receptor 317
Cpgi2933 11 58732422 to 58732582 160 CpG island CpG island 2933
Olfr316 11 58752734 to 58759671 6937 + protein coding gene olfactory receptor 316
Olfr315 11 58778089 to 58779086 997 + protein coding gene olfactory receptor 315
Cpgi2934 11 58778477 to 58778896 419 CpG island CpG island 2934
Tssr101750 11 58782956 to 58782969 13 + TSS region transcription start site region 101750
Tssr101751 11 58782983 to 58782988 5 + TSS region transcription start site region 101751
Olfr314 11 58786139 to 58787269 1130 + protein coding gene olfactory receptor 314
Tssr101752 11 58790897 to 58790928 31 + TSS region transcription start site region 101752
Fam183b 11 58792797 to 58801960 9163 - protein coding gene family with sequence similarity 183, member B
Tssr108169 11 58801904 to 58801943 39 - TSS region transcription start site region 108169
Tssr108170 11 58801944 to 58801968 24 - TSS region transcription start site region 108170
Tssr108171 11 58801971 to 58801979 8 - TSS region transcription start site region 108171
Tssr108172 11 58802193 to 58802221 28 - TSS region transcription start site region 108172
Tssr108173 11 58802229 to 58802242 13 - TSS region transcription start site region 108173
Olfr313 11 58816928 to 58818001 1073 + protein coding gene olfactory receptor 313
Skts-fp2 11 58828440 to 85175703 26347263 QTL skin tumor susceptibility in FVB and PWK 2
D11Mit155a 11 58828440 to 58828554 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 155a
Olfr312 11 58831156 to 58832082 926 + protein coding gene olfactory receptor 312
D11Mit155b 11 58838468 to 58838578 110 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 155b
Olfr311 11 58841116 to 58842042 926 + protein coding gene olfactory receptor 311
Cpgi2935 11 58847029 to 58847508 479 CpG island CpG island 2935
Tssr101753 11 58847153 to 58847226 73 + TSS region transcription start site region 101753
Gm12258 11 58847158 to 58861956 14798 + protein coding gene predicted gene 12258
Gm12259 11 58865965 to 58867154 1189 + lincRNA gene predicted gene 12259
Cpgi2936 11 58867076 to 58867581 505 CpG island CpG island 2936
Tssr101754 11 58867204 to 58867229 25 + TSS region transcription start site region 101754
2810021J22Rik 11 58867216 to 58883288 16072 + protein coding gene RIKEN cDNA 2810021J22 gene
Tssr101755 11 58867230 to 58867275 45 + TSS region transcription start site region 101755
Tssr101756 11 58884042 to 58884074 32 + TSS region transcription start site region 101756
Tssr101757 11 58884089 to 58884098 9 + TSS region transcription start site region 101757
Tssr101758 11 58884101 to 58884113 12 + TSS region transcription start site region 101758
Zfp39 11 58888153 to 58904225 16072 - protein coding gene zinc finger protein 39
Tssr108174 11 58889298 to 58889301 3 - TSS region transcription start site region 108174
Gm12256 11 58889710 to 58891548 1838 + antisense lncRNA gene predicted gene 12256
Tssr108175 11 58889713 to 58889726 13 - TSS region transcription start site region 108175
Tssr101759 11 58893703 to 58893710 7 + TSS region transcription start site region 101759
Cpgi2937 11 58903766 to 58904439 673 CpG island CpG island 2937
Tssr108176 11 58904145 to 58904157 12 - TSS region transcription start site region 108176
Tssr108177 11 58904158 to 58904168 10 - TSS region transcription start site region 108177
Tssr108178 11 58904173 to 58904217 44 - TSS region transcription start site region 108178
Tssr108179 11 58904219 to 58904236 17 - TSS region transcription start site region 108179
Gm12257 11 58904402 to 58906170 1768 + antisense lncRNA gene predicted gene 12257