Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:58285620-58475637

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930438A08Rik 11 58274799 to 58294289 19490 + protein coding gene RIKEN cDNA 4930438A08 gene
Gm39827 11 58284300 to 58302239 17939 - lncRNA gene predicted gene, 39827
Tssr101717 11 58286440 to 58286454 14 + TSS region transcription start site region 101717
Tssr101718 11 58286461 to 58286478 17 + TSS region transcription start site region 101718
Cpgi2924 11 58293386 to 58293695 309 CpG island CpG island 2924
Cpgi2925 11 58301999 to 58303084 1085 CpG island CpG island 2925
n-TEctc10 11 58302177 to 58302248 71 - tRNA gene nuclear encoded tRNA glutamic acid 10 (anticodon CTC)
n-TLcaa3 11 58302474 to 58302580 106 - tRNA gene nuclear encoded tRNA leucine 3 (anticodon CAA)
Cpgi2926 11 58306890 to 58308024 1134 CpG island CpG island 2926
Tssr101719 11 58307055 to 58307104 49 + TSS region transcription start site region 101719
Zfp692 11 58307069 to 58314627 7558 + protein coding gene zinc finger protein 692
Tssr101720 11 58307122 to 58307143 21 + TSS region transcription start site region 101720
Tssr108151 11 58307688 to 58307701 13 - TSS region transcription start site region 108151
Zfp672 11 58315114 to 58330339 15225 - protein coding gene zinc finger protein 672
Cpgi2927 11 58316461 to 58317508 1047 CpG island CpG island 2927
Cpgi2928 11 58322678 to 58324022 1344 CpG island CpG island 2928
1700047K16Rik 11 58322988 to 58324439 1451 + unclassified non-coding RNA gene RIKEN cDNA 1700047K16 gene
Tssr108152 11 58323139 to 58323161 22 - TSS region transcription start site region 108152
Tssr108153 11 58323295 to 58323357 62 - TSS region transcription start site region 108153
Tssr108154 11 58323358 to 58323372 14 - TSS region transcription start site region 108154
Cpgi2929 11 58329935 to 58331079 1144 CpG island CpG island 2929
Tssr108155 11 58330238 to 58330253 15 - TSS region transcription start site region 108155
Tssr108156 11 58330319 to 58330358 39 - TSS region transcription start site region 108156
Tssr101721 11 58330712 to 58330735 23 + TSS region transcription start site region 101721
Sh3bp5l 11 58330724 to 58347728 17004 + protein coding gene SH3 binding domain protein 5 like
Tssr101722 11 58330744 to 58330777 33 + TSS region transcription start site region 101722
Gm33660 11 58361794 to 58372784 10990 + lncRNA gene predicted gene, 33660
Tssr101723 11 58377541 to 58377546 5 + TSS region transcription start site region 101723
Lypd8 11 58379032 to 58390541 11509 + protein coding gene LY6/PLAUR domain containing 8
Tssr101724 11 58379036 to 58379052 16 + TSS region transcription start site region 101724
Tssr101725 11 58379636 to 58379676 40 + TSS region transcription start site region 101725
Tssr101726 11 58380541 to 58380552 11 + TSS region transcription start site region 101726
Tssr101727 11 58380561 to 58380619 58 + TSS region transcription start site region 101727
Tssr101728 11 58380620 to 58380637 17 + TSS region transcription start site region 101728
Tssr101729 11 58382280 to 58382299 19 + TSS region transcription start site region 101729
Tssr101730 11 58382310 to 58382325 15 + TSS region transcription start site region 101730
Tssr101731 11 58382333 to 58382348 15 + TSS region transcription start site region 101731
Tssr101732 11 58382746 to 58382789 43 + TSS region transcription start site region 101732
Tssr101733 11 58382796 to 58382814 18 + TSS region transcription start site region 101733
Tssr101734 11 58382837 to 58382846 9 + TSS region transcription start site region 101734
Tssr101735 11 58384607 to 58384620 13 + TSS region transcription start site region 101735
Tssr101736 11 58384668 to 58384688 20 + TSS region transcription start site region 101736
Tssr101737 11 58384719 to 58384728 9 + TSS region transcription start site region 101737
Tssr101738 11 58384740 to 58384746 6 + TSS region transcription start site region 101738
Tssr101739 11 58386723 to 58386761 38 + TSS region transcription start site region 101739
Tssr108157 11 58386770 to 58386804 34 - TSS region transcription start site region 108157
Tssr101740 11 58386787 to 58386806 19 + TSS region transcription start site region 101740
Tssr101741 11 58386815 to 58386824 9 + TSS region transcription start site region 101741
Tssr108158 11 58386822 to 58386836 14 - TSS region transcription start site region 108158
Tssr101742 11 58390088 to 58390135 47 + TSS region transcription start site region 101742
Tssr108159 11 58390151 to 58390158 7 - TSS region transcription start site region 108159
Tssr101743 11 58390157 to 58390234 77 + TSS region transcription start site region 101743
Tssr108160 11 58390164 to 58390178 14 - TSS region transcription start site region 108160
Tssr108161 11 58390229 to 58390257 28 - TSS region transcription start site region 108161
Tssr101744 11 58390239 to 58390250 11 + TSS region transcription start site region 101744
Tssr108162 11 58390258 to 58390289 31 - TSS region transcription start site region 108162
Tssr101745 11 58390268 to 58390291 23 + TSS region transcription start site region 101745
Tssr3508 11 58390307 to 58390320 13 - TSS region transcription start site region 3508
Tssr101746 11 58390617 to 58390649 32 + TSS region transcription start site region 101746
Gm12251 11 58392769 to 58393560 791 - pseudogene predicted gene 12251
Tssr101747 11 58393924 to 58393934 10 + TSS region transcription start site region 101747
Gm12252 11 58396297 to 58396515 218 - pseudogene predicted gene 12252
Tssr3509 11 58421080 to 58421087 7 + TSS region transcription start site region 3509
Tssr101748 11 58421103 to 58421118 15 + TSS region transcription start site region 101748
1810065E05Rik 11 58421111 to 58426023 4912 + protein coding gene RIKEN cDNA 1810065E05 gene
Tssr3510 11 58421124 to 58421151 27 + TSS region transcription start site region 3510
Tssr3511 11 58421671 to 58421672 1 + TSS region transcription start site region 3511
Gm12253 11 58432559 to 58441622 9063 + protein coding gene predicted gene 12253
Lypd9 11 58446149 to 58452923 6774 - protein coding gene LY6/PLAUR domain containing 9
Tssr108163 11 58452919 to 58452950 31 - TSS region transcription start site region 108163
Olfr30 11 58454915 to 58455980 1065 - protein coding gene olfactory receptor 30