Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:58221461-58351478

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Irgm2 11 58214977 to 58222783 7806 + protein coding gene immunity-related GTPase family M member 2
Gm5038 11 58230480 to 58232186 1706 - pseudogene predicted gene 5038
Tssr108149 11 58231434 to 58231445 11 - TSS region transcription start site region 108149
Cpgi2923 11 58239297 to 58239783 486 CpG island CpG island 2923
Tssr108150 11 58239681 to 58239731 50 - TSS region transcription start site region 108150
4930438A08Rik 11 58274799 to 58294289 19490 + protein coding gene RIKEN cDNA 4930438A08 gene
Tssr101715 11 58274806 to 58274856 50 + TSS region transcription start site region 101715
Tssr101716 11 58275022 to 58275037 15 + TSS region transcription start site region 101716
Gm39827 11 58284300 to 58302239 17939 - lncRNA gene predicted gene, 39827
Tssr101717 11 58286440 to 58286454 14 + TSS region transcription start site region 101717
Tssr101718 11 58286461 to 58286478 17 + TSS region transcription start site region 101718
Cpgi2924 11 58293386 to 58293695 309 CpG island CpG island 2924
Cpgi2925 11 58301999 to 58303084 1085 CpG island CpG island 2925
n-TEctc10 11 58302177 to 58302248 71 - tRNA gene nuclear encoded tRNA glutamic acid 10 (anticodon CTC)
n-TLcaa3 11 58302474 to 58302580 106 - tRNA gene nuclear encoded tRNA leucine 3 (anticodon CAA)
Cpgi2926 11 58306890 to 58308024 1134 CpG island CpG island 2926
Tssr101719 11 58307055 to 58307104 49 + TSS region transcription start site region 101719
Zfp692 11 58307069 to 58314627 7558 + protein coding gene zinc finger protein 692
Tssr101720 11 58307122 to 58307143 21 + TSS region transcription start site region 101720
Tssr108151 11 58307688 to 58307701 13 - TSS region transcription start site region 108151
Zfp672 11 58315114 to 58330339 15225 - protein coding gene zinc finger protein 672
Cpgi2927 11 58316461 to 58317508 1047 CpG island CpG island 2927
Cpgi2928 11 58322678 to 58324022 1344 CpG island CpG island 2928
1700047K16Rik 11 58322988 to 58324439 1451 + unclassified non-coding RNA gene RIKEN cDNA 1700047K16 gene
Tssr108152 11 58323139 to 58323161 22 - TSS region transcription start site region 108152
Tssr108153 11 58323295 to 58323357 62 - TSS region transcription start site region 108153
Tssr108154 11 58323358 to 58323372 14 - TSS region transcription start site region 108154
Cpgi2929 11 58329935 to 58331079 1144 CpG island CpG island 2929
Tssr108155 11 58330238 to 58330253 15 - TSS region transcription start site region 108155
Tssr108156 11 58330319 to 58330358 39 - TSS region transcription start site region 108156
Tssr101721 11 58330712 to 58330735 23 + TSS region transcription start site region 101721
Sh3bp5l 11 58330724 to 58347728 17004 + protein coding gene SH3 binding domain protein 5 like
Tssr101722 11 58330744 to 58330777 33 + TSS region transcription start site region 101722