Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:58062739-58314012

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12248 11 58063671 to 58093175 29504 - protein coding gene predicted gene 12248
Tssr108136 11 58073018 to 58073031 13 - TSS region transcription start site region 108136
Tssr108137 11 58073036 to 58073047 11 - TSS region transcription start site region 108137
Tssr101672 11 58092788 to 58092817 29 + TSS region transcription start site region 101672
Tssr108138 11 58093091 to 58093109 18 - TSS region transcription start site region 108138
Tssr108139 11 58093110 to 58093151 41 - TSS region transcription start site region 108139
Tssr101673 11 58093236 to 58093257 21 + TSS region transcription start site region 101673
Cpgi2918 11 58097093 to 58097256 163 CpG island CpG island 2918
Gm12247 11 58097104 to 58097773 669 - pseudogene predicted gene 12247
Cpgi2919 11 58097724 to 58097905 181 CpG island CpG island 2919
Tssr101674 11 58102782 to 58102814 32 + TSS region transcription start site region 101674
Tssr101675 11 58102862 to 58102874 12 + TSS region transcription start site region 101675
Tssr101676 11 58102906 to 58102917 11 + TSS region transcription start site region 101676
Cpgi2920 11 58103298 to 58104831 1533 CpG island CpG island 2920
Tssr101677 11 58103970 to 58104027 57 + TSS region transcription start site region 101677
Tssr101678 11 58104031 to 58104050 19 + TSS region transcription start site region 101678
Tssr101679 11 58104051 to 58104081 30 + TSS region transcription start site region 101679
Tssr101680 11 58104082 to 58104137 55 + TSS region transcription start site region 101680
Tssr101681 11 58104138 to 58104191 53 + TSS region transcription start site region 101681
Cnot8 11 58104153 to 58118594 14441 + protein coding gene CCR4-NOT transcription complex, subunit 8
Tssr101682 11 58104239 to 58104280 41 + TSS region transcription start site region 101682
Tssr101683 11 58117726 to 58117750 24 + TSS region transcription start site region 101683
Gemin5 11 58120002 to 58168539 48537 - protein coding gene gem nuclear organelle associated protein 5
Gm33350 11 58126007 to 58136198 10191 + lncRNA gene predicted gene, 33350
Gm12246 11 58126068 to 58128512 2444 + antisense lncRNA gene predicted gene 12246
Tssr108140 11 58139520 to 58139534 14 - TSS region transcription start site region 108140
Tssr108141 11 58139540 to 58139551 11 - TSS region transcription start site region 108141
Cpgi2921 11 58167990 to 58168866 876 CpG island CpG island 2921
Tssr108142 11 58168467 to 58168544 77 - TSS region transcription start site region 108142
Cpgi2922 11 58171518 to 58172016 498 CpG island CpG island 2922
Tssr101684 11 58171648 to 58171688 40 + TSS region transcription start site region 101684
Mrpl22 11 58171661 to 58179565 7904 + protein coding gene mitochondrial ribosomal protein L22
Tssr108143 11 58171996 to 58172005 9 - TSS region transcription start site region 108143
Tssr101685 11 58183795 to 58183817 22 + TSS region transcription start site region 101685
Tssr101686 11 58183826 to 58183871 45 + TSS region transcription start site region 101686
Tssr101687 11 58183886 to 58183897 11 + TSS region transcription start site region 101687
Tssr101688 11 58183918 to 58183931 13 + TSS region transcription start site region 101688
Tssr101689 11 58183935 to 58183947 12 + TSS region transcription start site region 101689
Gm12250 11 58187739 to 58189012 1273 + pseudogene predicted gene 12250
Tssr101690 11 58190197 to 58190245 48 + TSS region transcription start site region 101690
Igtp 11 58199556 to 58207591 8035 + protein coding gene interferon gamma induced GTPase
Tssr101691 11 58199727 to 58199755 28 + TSS region transcription start site region 101691
Tssr101692 11 58201350 to 58201371 21 + TSS region transcription start site region 101692
Tssr101693 11 58201469 to 58201501 32 + TSS region transcription start site region 101693
Tssr101694 11 58201506 to 58201538 32 + TSS region transcription start site region 101694
Tssr108144 11 58201557 to 58201574 17 - TSS region transcription start site region 108144
Tssr101695 11 58202527 to 58202539 12 + TSS region transcription start site region 101695
Tssr101696 11 58202574 to 58202584 10 + TSS region transcription start site region 101696
Tssr101697 11 58202616 to 58202628 12 + TSS region transcription start site region 101697
Tssr101698 11 58203265 to 58203286 21 + TSS region transcription start site region 101698
Tssr108145 11 58204911 to 58204937 26 - TSS region transcription start site region 108145
Tssr101699 11 58204938 to 58204957 19 + TSS region transcription start site region 101699
Tssr101700 11 58205062 to 58205095 33 + TSS region transcription start site region 101700
Tssr101701 11 58205102 to 58205124 22 + TSS region transcription start site region 101701
Tssr101702 11 58206096 to 58206115 19 + TSS region transcription start site region 101702
Tssr101703 11 58206117 to 58206128 11 + TSS region transcription start site region 101703
Tssr101704 11 58206691 to 58206717 26 + TSS region transcription start site region 101704
Tssr101705 11 58206938 to 58206949 11 + TSS region transcription start site region 101705
Tssr101706 11 58206967 to 58206976 9 + TSS region transcription start site region 101706
Tssr101707 11 58207313 to 58207340 27 + TSS region transcription start site region 101707
Tssr108146 11 58207589 to 58207591 2 - TSS region transcription start site region 108146
Tssr108147 11 58214717 to 58214721 4 - TSS region transcription start site region 108147
Tssr108148 11 58214776 to 58214798 22 - TSS region transcription start site region 108148
Irgm2 11 58214977 to 58222783 7806 + protein coding gene immunity-related GTPase family M member 2
Tssr101708 11 58220179 to 58220190 11 + TSS region transcription start site region 101708
Tssr101709 11 58220481 to 58220510 29 + TSS region transcription start site region 101709
Tssr101710 11 58220516 to 58220528 12 + TSS region transcription start site region 101710
Tssr101711 11 58220677 to 58220714 37 + TSS region transcription start site region 101711
Tssr101712 11 58220731 to 58220755 24 + TSS region transcription start site region 101712
Tssr101713 11 58221049 to 58221074 25 + TSS region transcription start site region 101713
Tssr101714 11 58221098 to 58221115 17 + TSS region transcription start site region 101714
Gm5038 11 58230480 to 58232186 1706 - pseudogene predicted gene 5038
Tssr108149 11 58231434 to 58231445 11 - TSS region transcription start site region 108149
Cpgi2923 11 58239297 to 58239783 486 CpG island CpG island 2923
Tssr108150 11 58239681 to 58239731 50 - TSS region transcription start site region 108150
4930438A08Rik 11 58274799 to 58294289 19490 + protein coding gene RIKEN cDNA 4930438A08 gene
Tssr101715 11 58274806 to 58274856 50 + TSS region transcription start site region 101715
Tssr101716 11 58275022 to 58275037 15 + TSS region transcription start site region 101716
Gm39827 11 58284300 to 58302239 17939 - lncRNA gene predicted gene, 39827
Tssr101717 11 58286440 to 58286454 14 + TSS region transcription start site region 101717
Tssr101718 11 58286461 to 58286478 17 + TSS region transcription start site region 101718
Cpgi2924 11 58293386 to 58293695 309 CpG island CpG island 2924
Cpgi2925 11 58301999 to 58303084 1085 CpG island CpG island 2925
n-TEctc10 11 58302177 to 58302248 71 - tRNA gene nuclear encoded tRNA glutamic acid 10 (anticodon CTC)
n-TLcaa3 11 58302474 to 58302580 106 - tRNA gene nuclear encoded tRNA leucine 3 (anticodon CAA)
Cpgi2926 11 58306890 to 58308024 1134 CpG island CpG island 2926
Tssr101719 11 58307055 to 58307104 49 + TSS region transcription start site region 101719
Zfp692 11 58307069 to 58314627 7558 + protein coding gene zinc finger protein 692
Tssr101720 11 58307122 to 58307143 21 + TSS region transcription start site region 101720
Tssr108151 11 58307688 to 58307701 13 - TSS region transcription start site region 108151