Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:58027739-58349012

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114 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Larp1 11 58009064 to 58062034 52970 + protein coding gene La ribonucleoprotein domain family, member 1
Tssr101662 11 58040413 to 58040422 9 + TSS region transcription start site region 101662
Tssr101663 11 58043104 to 58043109 5 + TSS region transcription start site region 101663
Tssr101664 11 58049595 to 58049643 48 + TSS region transcription start site region 101664
Tssr101665 11 58049647 to 58049659 12 + TSS region transcription start site region 101665
Tssr101666 11 58051306 to 58051326 20 + TSS region transcription start site region 101666
Tssr101667 11 58051335 to 58051345 10 + TSS region transcription start site region 101667
Tssr101668 11 58059226 to 58059248 22 + TSS region transcription start site region 101668
Tssr101669 11 58059321 to 58059337 16 + TSS region transcription start site region 101669
Tssr101670 11 58059382 to 58059427 45 + TSS region transcription start site region 101670
Tssr101671 11 58060999 to 58061011 12 + TSS region transcription start site region 101671
Gm12248 11 58063671 to 58093175 29504 - protein coding gene predicted gene 12248
Tssr108136 11 58073018 to 58073031 13 - TSS region transcription start site region 108136
Tssr108137 11 58073036 to 58073047 11 - TSS region transcription start site region 108137
Tssr101672 11 58092788 to 58092817 29 + TSS region transcription start site region 101672
Tssr108138 11 58093091 to 58093109 18 - TSS region transcription start site region 108138
Tssr108139 11 58093110 to 58093151 41 - TSS region transcription start site region 108139
Tssr101673 11 58093236 to 58093257 21 + TSS region transcription start site region 101673
Cpgi2918 11 58097093 to 58097256 163 CpG island CpG island 2918
Gm12247 11 58097104 to 58097773 669 - pseudogene predicted gene 12247
Cpgi2919 11 58097724 to 58097905 181 CpG island CpG island 2919
Tssr101674 11 58102782 to 58102814 32 + TSS region transcription start site region 101674
Tssr101675 11 58102862 to 58102874 12 + TSS region transcription start site region 101675
Tssr101676 11 58102906 to 58102917 11 + TSS region transcription start site region 101676
Cpgi2920 11 58103298 to 58104831 1533 CpG island CpG island 2920
Tssr101677 11 58103970 to 58104027 57 + TSS region transcription start site region 101677
Tssr101678 11 58104031 to 58104050 19 + TSS region transcription start site region 101678
Tssr101679 11 58104051 to 58104081 30 + TSS region transcription start site region 101679
Tssr101680 11 58104082 to 58104137 55 + TSS region transcription start site region 101680
Tssr101681 11 58104138 to 58104191 53 + TSS region transcription start site region 101681
Cnot8 11 58104153 to 58118594 14441 + protein coding gene CCR4-NOT transcription complex, subunit 8
Tssr101682 11 58104239 to 58104280 41 + TSS region transcription start site region 101682
Tssr101683 11 58117726 to 58117750 24 + TSS region transcription start site region 101683
Gemin5 11 58120002 to 58168539 48537 - protein coding gene gem nuclear organelle associated protein 5
Gm33350 11 58126007 to 58136198 10191 + lncRNA gene predicted gene, 33350
Gm12246 11 58126068 to 58128512 2444 + antisense lncRNA gene predicted gene 12246
Tssr108140 11 58139520 to 58139534 14 - TSS region transcription start site region 108140
Tssr108141 11 58139540 to 58139551 11 - TSS region transcription start site region 108141
Cpgi2921 11 58167990 to 58168866 876 CpG island CpG island 2921
Tssr108142 11 58168467 to 58168544 77 - TSS region transcription start site region 108142
Cpgi2922 11 58171518 to 58172016 498 CpG island CpG island 2922
Tssr101684 11 58171648 to 58171688 40 + TSS region transcription start site region 101684
Mrpl22 11 58171661 to 58179565 7904 + protein coding gene mitochondrial ribosomal protein L22
Tssr108143 11 58171996 to 58172005 9 - TSS region transcription start site region 108143
Tssr101685 11 58183795 to 58183817 22 + TSS region transcription start site region 101685
Tssr101686 11 58183826 to 58183871 45 + TSS region transcription start site region 101686
Tssr101687 11 58183886 to 58183897 11 + TSS region transcription start site region 101687
Tssr101688 11 58183918 to 58183931 13 + TSS region transcription start site region 101688
Tssr101689 11 58183935 to 58183947 12 + TSS region transcription start site region 101689
Gm12250 11 58187739 to 58189012 1273 + pseudogene predicted gene 12250
Tssr101690 11 58190197 to 58190245 48 + TSS region transcription start site region 101690
Igtp 11 58199556 to 58207591 8035 + protein coding gene interferon gamma induced GTPase
Tssr101691 11 58199727 to 58199755 28 + TSS region transcription start site region 101691
Tssr101692 11 58201350 to 58201371 21 + TSS region transcription start site region 101692
Tssr101693 11 58201469 to 58201501 32 + TSS region transcription start site region 101693
Tssr101694 11 58201506 to 58201538 32 + TSS region transcription start site region 101694
Tssr108144 11 58201557 to 58201574 17 - TSS region transcription start site region 108144
Tssr101695 11 58202527 to 58202539 12 + TSS region transcription start site region 101695
Tssr101696 11 58202574 to 58202584 10 + TSS region transcription start site region 101696
Tssr101697 11 58202616 to 58202628 12 + TSS region transcription start site region 101697
Tssr101698 11 58203265 to 58203286 21 + TSS region transcription start site region 101698
Tssr108145 11 58204911 to 58204937 26 - TSS region transcription start site region 108145
Tssr101699 11 58204938 to 58204957 19 + TSS region transcription start site region 101699
Tssr101700 11 58205062 to 58205095 33 + TSS region transcription start site region 101700
Tssr101701 11 58205102 to 58205124 22 + TSS region transcription start site region 101701
Tssr101702 11 58206096 to 58206115 19 + TSS region transcription start site region 101702
Tssr101703 11 58206117 to 58206128 11 + TSS region transcription start site region 101703
Tssr101704 11 58206691 to 58206717 26 + TSS region transcription start site region 101704
Tssr101705 11 58206938 to 58206949 11 + TSS region transcription start site region 101705
Tssr101706 11 58206967 to 58206976 9 + TSS region transcription start site region 101706
Tssr101707 11 58207313 to 58207340 27 + TSS region transcription start site region 101707
Tssr108146 11 58207589 to 58207591 2 - TSS region transcription start site region 108146
Tssr108147 11 58214717 to 58214721 4 - TSS region transcription start site region 108147
Tssr108148 11 58214776 to 58214798 22 - TSS region transcription start site region 108148
Irgm2 11 58214977 to 58222783 7806 + protein coding gene immunity-related GTPase family M member 2
Tssr101708 11 58220179 to 58220190 11 + TSS region transcription start site region 101708
Tssr101709 11 58220481 to 58220510 29 + TSS region transcription start site region 101709
Tssr101710 11 58220516 to 58220528 12 + TSS region transcription start site region 101710
Tssr101711 11 58220677 to 58220714 37 + TSS region transcription start site region 101711
Tssr101712 11 58220731 to 58220755 24 + TSS region transcription start site region 101712
Tssr101713 11 58221049 to 58221074 25 + TSS region transcription start site region 101713
Tssr101714 11 58221098 to 58221115 17 + TSS region transcription start site region 101714
Gm5038 11 58230480 to 58232186 1706 - pseudogene predicted gene 5038
Tssr108149 11 58231434 to 58231445 11 - TSS region transcription start site region 108149
Cpgi2923 11 58239297 to 58239783 486 CpG island CpG island 2923
Tssr108150 11 58239681 to 58239731 50 - TSS region transcription start site region 108150
4930438A08Rik 11 58274799 to 58294289 19490 + protein coding gene RIKEN cDNA 4930438A08 gene
Tssr101715 11 58274806 to 58274856 50 + TSS region transcription start site region 101715
Tssr101716 11 58275022 to 58275037 15 + TSS region transcription start site region 101716
Gm39827 11 58284300 to 58302239 17939 - lncRNA gene predicted gene, 39827
Tssr101717 11 58286440 to 58286454 14 + TSS region transcription start site region 101717
Tssr101718 11 58286461 to 58286478 17 + TSS region transcription start site region 101718
Cpgi2924 11 58293386 to 58293695 309 CpG island CpG island 2924
Cpgi2925 11 58301999 to 58303084 1085 CpG island CpG island 2925
n-TEctc10 11 58302177 to 58302248 71 - tRNA gene nuclear encoded tRNA glutamic acid 10 (anticodon CTC)
n-TLcaa3 11 58302474 to 58302580 106 - tRNA gene nuclear encoded tRNA leucine 3 (anticodon CAA)
Cpgi2926 11 58306890 to 58308024 1134 CpG island CpG island 2926
Tssr101719 11 58307055 to 58307104 49 + TSS region transcription start site region 101719
Zfp692 11 58307069 to 58314627 7558 + protein coding gene zinc finger protein 692
Tssr101720 11 58307122 to 58307143 21 + TSS region transcription start site region 101720
Tssr108151 11 58307688 to 58307701 13 - TSS region transcription start site region 108151
Zfp672 11 58315114 to 58330339 15225 - protein coding gene zinc finger protein 672
Cpgi2927 11 58316461 to 58317508 1047 CpG island CpG island 2927
Cpgi2928 11 58322678 to 58324022 1344 CpG island CpG island 2928
1700047K16Rik 11 58322988 to 58324439 1451 + unclassified non-coding RNA gene RIKEN cDNA 1700047K16 gene
Tssr108152 11 58323139 to 58323161 22 - TSS region transcription start site region 108152
Tssr108153 11 58323295 to 58323357 62 - TSS region transcription start site region 108153
Tssr108154 11 58323358 to 58323372 14 - TSS region transcription start site region 108154
Cpgi2929 11 58329935 to 58331079 1144 CpG island CpG island 2929
Tssr108155 11 58330238 to 58330253 15 - TSS region transcription start site region 108155
Tssr108156 11 58330319 to 58330358 39 - TSS region transcription start site region 108156
Tssr101721 11 58330712 to 58330735 23 + TSS region transcription start site region 101721
Sh3bp5l 11 58330724 to 58347728 17004 + protein coding gene SH3 binding domain protein 5 like
Tssr101722 11 58330744 to 58330777 33 + TSS region transcription start site region 101722