Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:57011794-59722784

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572 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gria1 11 57011571 to 57330244 318673 + protein coding gene glutamate receptor, ionotropic, AMPA1 (alpha 1)
Tssr101632 11 57011798 to 57011827 29 + TSS region transcription start site region 101632
Tssr101633 11 57011832 to 57011843 11 + TSS region transcription start site region 101633
Tssr101634 11 57011945 to 57011946 1 + TSS region transcription start site region 101634
Tssr101635 11 57012747 to 57012785 38 + TSS region transcription start site region 101635
Tssr108110 11 57112423 to 57112458 35 - TSS region transcription start site region 108110
Tssr101636 11 57128903 to 57128920 17 + TSS region transcription start site region 101636
Tssr108111 11 57199389 to 57199392 3 - TSS region transcription start site region 108111
Gm12242 11 57449107 to 57449844 737 + pseudogene predicted gene 12242
Tssr108112 11 57481783 to 57481787 4 - TSS region transcription start site region 108112
Fam114a2 11 57482993 to 57518617 35624 - protein coding gene family with sequence similarity 114, member A2
Tssr108113 11 57507041 to 57507052 11 - TSS region transcription start site region 108113
Tssr108114 11 57507102 to 57507106 4 - TSS region transcription start site region 108114
Tssr108115 11 57507110 to 57507115 5 - TSS region transcription start site region 108115
Tssr108116 11 57507129 to 57507134 5 - TSS region transcription start site region 108116
Tssr3505 11 57513856 to 57513857 1 - TSS region transcription start site region 3505
Cpgi2906 11 57518044 to 57519037 993 CpG island CpG island 2906
Tssr101637 11 57518241 to 57518249 8 + TSS region transcription start site region 101637
Tssr108117 11 57518596 to 57518655 59 - TSS region transcription start site region 108117
Tssr101638 11 57518657 to 57518722 65 + TSS region transcription start site region 101638
Mfap3 11 57518664 to 57533815 15151 + protein coding gene microfibrillar-associated protein 3
Gm12243 11 57572512 to 57574595 2083 + lincRNA gene predicted gene 12243
4930486A15Rik 11 57601576 to 57602671 1095 unclassified gene RIKEN cDNA 4930486A15 gene
4933424L21Rik 11 57623698 to 57649494 25796 - antisense lncRNA gene RIKEN cDNA 4933424L21 gene
Tssr101639 11 57644590 to 57644617 27 + TSS region transcription start site region 101639
Cpgi2907 11 57644619 to 57646030 1411 CpG island CpG island 2907
Tssr101640 11 57645417 to 57645489 72 + TSS region transcription start site region 101640
Galnt10 11 57645442 to 57787501 142059 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 10
Tssr108118 11 57649465 to 57649498 33 - TSS region transcription start site region 108118
Tssr101641 11 57649568 to 57649571 3 + TSS region transcription start site region 101641
4933426K07Rik 11 57655415 to 57657826 2411 - antisense lncRNA gene RIKEN cDNA 4933426K07 gene
Tssr108119 11 57657805 to 57657839 34 - TSS region transcription start site region 108119
5830435N06Rik 11 57665726 to 57667169 1443 unclassified gene RIKEN cDNA 5830435N06 gene
Gm46282 11 57706093 to 57710163 4070 + lncRNA gene predicted gene, 46282
Tssr101642 11 57708976 to 57708997 21 + TSS region transcription start site region 101642
Tssr101643 11 57717311 to 57717314 3 + TSS region transcription start site region 101643
Gm24582 11 57741300 to 57741402 102 + snRNA gene predicted gene, 24582
n-R5s69 11 57764427 to 57764545 118 + rRNA gene nuclear encoded rRNA 5S 69
2010001A14Rik 11 57795499 to 57801417 5918 - lncRNA gene RIKEN cDNA 2010001A14 gene
Cpgi2908 11 57800700 to 57802833 2133 CpG island CpG island 2908
Tssr108120 11 57801411 to 57801432 21 - TSS region transcription start site region 108120
Tssr108121 11 57801436 to 57801453 17 - TSS region transcription start site region 108121
Tssr108122 11 57801459 to 57801487 28 - TSS region transcription start site region 108122
Tssr101644 11 57801575 to 57801649 74 + TSS region transcription start site region 101644
Sap30l 11 57801637 to 57810217 8580 + protein coding gene SAP30-like
Tssr101645 11 57807330 to 57807332 2 + TSS region transcription start site region 101645
Cpgi2909 11 57825040 to 57825240 200 CpG island CpG island 2909
Cpgi2910 11 57827530 to 57828360 830 CpG island CpG island 2910
Hand1 11 57828713 to 57832147 3434 - protein coding gene heart and neural crest derivatives expressed 1
Tssr108123 11 57828956 to 57828963 7 - TSS region transcription start site region 108123
Tssr108124 11 57829017 to 57829020 3 - TSS region transcription start site region 108124
Tssr108125 11 57829049 to 57829065 16 - TSS region transcription start site region 108125
Cpgi2911 11 57829073 to 57829742 669 CpG island CpG island 2911
Tssr108126 11 57829235 to 57829246 11 - TSS region transcription start site region 108126
Tssr3506 11 57829270 to 57829271 1 - TSS region transcription start site region 3506
Tssr108127 11 57829308 to 57829313 5 - TSS region transcription start site region 108127
Tssr108128 11 57829315 to 57829325 10 - TSS region transcription start site region 108128
Tssr108129 11 57829446 to 57829460 14 - TSS region transcription start site region 108129
Cpgi2912 11 57831235 to 57832019 784 CpG island CpG island 2912
Tssr101646 11 57831686 to 57831689 3 + TSS region transcription start site region 101646
Tssr101647 11 57831694 to 57831703 9 + TSS region transcription start site region 101647
Tssr101648 11 57831707 to 57831720 13 + TSS region transcription start site region 101648
Tssr108130 11 57831763 to 57831766 3 - TSS region transcription start site region 108130
Tssr108131 11 57832004 to 57832021 17 - TSS region transcription start site region 108131
Tssr108132 11 57832084 to 57832095 11 - TSS region transcription start site region 108132
Tssr108133 11 57832142 to 57832147 5 - TSS region transcription start site region 108133
Tssr108134 11 57832679 to 57832690 11 - TSS region transcription start site region 108134
Cpgi2913 11 57832682 to 57832968 286 CpG island CpG island 2913
Cpgi2914 11 57833524 to 57833966 442 CpG island CpG island 2914
Cpgi2915 11 57836975 to 57837266 291 CpG island CpG island 2915
Gm32915 11 57839064 to 57841678 2614 + lncRNA gene predicted gene, 32915
Gm33026 11 57856987 to 57869386 12399 - lncRNA gene predicted gene, 33026
Gm12244 11 57880896 to 57881186 290 + pseudogene predicted gene 12244
Gm33078 11 57911741 to 57923298 11557 + lncRNA gene predicted gene, 33078
D11Mit143 11 57914737 to 57914828 91 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 143
Gm12245 11 57948729 to 57949085 356 - pseudogene predicted gene 12245
Cpgi2916 11 57962395 to 57963034 639 CpG island CpG island 2916
Tssr3507 11 57963657 to 57963682 25 - TSS region transcription start site region 3507
Gm26025 11 57969342 to 57969612 270 + unclassified non-coding RNA gene predicted gene, 26025
Gm12249 11 57970244 to 57973134 2890 - lincRNA gene predicted gene 12249
Tssr101649 11 57973184 to 57973199 15 + TSS region transcription start site region 101649
Tssr101650 11 57973256 to 57973265 9 + TSS region transcription start site region 101650
Tssr101651 11 57973402 to 57973429 27 + TSS region transcription start site region 101651
Cpgi2917 11 58008392 to 58010351 1959 CpG island CpG island 2917
Tssr101652 11 58008861 to 58008935 74 + TSS region transcription start site region 101652
Tssr101653 11 58008937 to 58008959 22 + TSS region transcription start site region 101653
Tssr101654 11 58008966 to 58008987 21 + TSS region transcription start site region 101654
Larp1 11 58009064 to 58062034 52970 + protein coding gene La ribonucleoprotein domain family, member 1
Tssr101655 11 58009079 to 58009090 11 + TSS region transcription start site region 101655
Tssr101656 11 58009131 to 58009144 13 + TSS region transcription start site region 101656
Tssr101657 11 58009161 to 58009206 45 + TSS region transcription start site region 101657
Tssr101658 11 58009575 to 58009584 9 + TSS region transcription start site region 101658
2510010K19Rik 11 58009918 to 58010175 257 unclassified gene RIKEN cDNA 2510010K19 gene
Tssr101659 11 58009989 to 58009999 10 + TSS region transcription start site region 101659
Tssr101660 11 58010019 to 58010047 28 + TSS region transcription start site region 101660
Tssr108135 11 58010628 to 58010637 9 - TSS region transcription start site region 108135
Tssr101661 11 58012531 to 58012535 4 + TSS region transcription start site region 101661
Tssr101662 11 58040413 to 58040422 9 + TSS region transcription start site region 101662
Tssr101663 11 58043104 to 58043109 5 + TSS region transcription start site region 101663
Tssr101664 11 58049595 to 58049643 48 + TSS region transcription start site region 101664
Tssr101665 11 58049647 to 58049659 12 + TSS region transcription start site region 101665
Tssr101666 11 58051306 to 58051326 20 + TSS region transcription start site region 101666
Tssr101667 11 58051335 to 58051345 10 + TSS region transcription start site region 101667
Tssr101668 11 58059226 to 58059248 22 + TSS region transcription start site region 101668
Tssr101669 11 58059321 to 58059337 16 + TSS region transcription start site region 101669
Tssr101670 11 58059382 to 58059427 45 + TSS region transcription start site region 101670
Tssr101671 11 58060999 to 58061011 12 + TSS region transcription start site region 101671
Gm12248 11 58063671 to 58093175 29504 - protein coding gene predicted gene 12248
Tssr108136 11 58073018 to 58073031 13 - TSS region transcription start site region 108136
Tssr108137 11 58073036 to 58073047 11 - TSS region transcription start site region 108137
Tssr101672 11 58092788 to 58092817 29 + TSS region transcription start site region 101672
Tssr108138 11 58093091 to 58093109 18 - TSS region transcription start site region 108138
Tssr108139 11 58093110 to 58093151 41 - TSS region transcription start site region 108139
Tssr101673 11 58093236 to 58093257 21 + TSS region transcription start site region 101673
Cpgi2918 11 58097093 to 58097256 163 CpG island CpG island 2918
Gm12247 11 58097104 to 58097773 669 - pseudogene predicted gene 12247
Cpgi2919 11 58097724 to 58097905 181 CpG island CpG island 2919
Tssr101674 11 58102782 to 58102814 32 + TSS region transcription start site region 101674
Tssr101675 11 58102862 to 58102874 12 + TSS region transcription start site region 101675
Tssr101676 11 58102906 to 58102917 11 + TSS region transcription start site region 101676
Cpgi2920 11 58103298 to 58104831 1533 CpG island CpG island 2920
Tssr101677 11 58103970 to 58104027 57 + TSS region transcription start site region 101677
Tssr101678 11 58104031 to 58104050 19 + TSS region transcription start site region 101678
Tssr101679 11 58104051 to 58104081 30 + TSS region transcription start site region 101679
Tssr101680 11 58104082 to 58104137 55 + TSS region transcription start site region 101680
Tssr101681 11 58104138 to 58104191 53 + TSS region transcription start site region 101681
Cnot8 11 58104153 to 58118594 14441 + protein coding gene CCR4-NOT transcription complex, subunit 8
Tssr101682 11 58104239 to 58104280 41 + TSS region transcription start site region 101682
Tssr101683 11 58117726 to 58117750 24 + TSS region transcription start site region 101683
Gemin5 11 58120002 to 58168539 48537 - protein coding gene gem nuclear organelle associated protein 5
Gm33350 11 58126007 to 58136198 10191 + lncRNA gene predicted gene, 33350
Gm12246 11 58126068 to 58128512 2444 + antisense lncRNA gene predicted gene 12246
Tssr108140 11 58139520 to 58139534 14 - TSS region transcription start site region 108140
Tssr108141 11 58139540 to 58139551 11 - TSS region transcription start site region 108141
Cpgi2921 11 58167990 to 58168866 876 CpG island CpG island 2921
Tssr108142 11 58168467 to 58168544 77 - TSS region transcription start site region 108142
Cpgi2922 11 58171518 to 58172016 498 CpG island CpG island 2922
Tssr101684 11 58171648 to 58171688 40 + TSS region transcription start site region 101684
Mrpl22 11 58171661 to 58179565 7904 + protein coding gene mitochondrial ribosomal protein L22
Tssr108143 11 58171996 to 58172005 9 - TSS region transcription start site region 108143
Tssr101685 11 58183795 to 58183817 22 + TSS region transcription start site region 101685
Tssr101686 11 58183826 to 58183871 45 + TSS region transcription start site region 101686
Tssr101687 11 58183886 to 58183897 11 + TSS region transcription start site region 101687
Tssr101688 11 58183918 to 58183931 13 + TSS region transcription start site region 101688
Tssr101689 11 58183935 to 58183947 12 + TSS region transcription start site region 101689
Gm12250 11 58187739 to 58189012 1273 + pseudogene predicted gene 12250
Tssr101690 11 58190197 to 58190245 48 + TSS region transcription start site region 101690
Igtp 11 58199556 to 58207591 8035 + protein coding gene interferon gamma induced GTPase
Tssr101691 11 58199727 to 58199755 28 + TSS region transcription start site region 101691
Tssr101692 11 58201350 to 58201371 21 + TSS region transcription start site region 101692
Tssr101693 11 58201469 to 58201501 32 + TSS region transcription start site region 101693
Tssr101694 11 58201506 to 58201538 32 + TSS region transcription start site region 101694
Tssr108144 11 58201557 to 58201574 17 - TSS region transcription start site region 108144
Tssr101695 11 58202527 to 58202539 12 + TSS region transcription start site region 101695
Tssr101696 11 58202574 to 58202584 10 + TSS region transcription start site region 101696
Tssr101697 11 58202616 to 58202628 12 + TSS region transcription start site region 101697
Tssr101698 11 58203265 to 58203286 21 + TSS region transcription start site region 101698
Tssr108145 11 58204911 to 58204937 26 - TSS region transcription start site region 108145
Tssr101699 11 58204938 to 58204957 19 + TSS region transcription start site region 101699
Tssr101700 11 58205062 to 58205095 33 + TSS region transcription start site region 101700
Tssr101701 11 58205102 to 58205124 22 + TSS region transcription start site region 101701
Tssr101702 11 58206096 to 58206115 19 + TSS region transcription start site region 101702
Tssr101703 11 58206117 to 58206128 11 + TSS region transcription start site region 101703
Tssr101704 11 58206691 to 58206717 26 + TSS region transcription start site region 101704
Tssr101705 11 58206938 to 58206949 11 + TSS region transcription start site region 101705
Tssr101706 11 58206967 to 58206976 9 + TSS region transcription start site region 101706
Tssr101707 11 58207313 to 58207340 27 + TSS region transcription start site region 101707
Tssr108146 11 58207589 to 58207591 2 - TSS region transcription start site region 108146
Tssr108147 11 58214717 to 58214721 4 - TSS region transcription start site region 108147
Tssr108148 11 58214776 to 58214798 22 - TSS region transcription start site region 108148
Irgm2 11 58214977 to 58222783 7806 + protein coding gene immunity-related GTPase family M member 2
Tssr101708 11 58220179 to 58220190 11 + TSS region transcription start site region 101708
Tssr101709 11 58220481 to 58220510 29 + TSS region transcription start site region 101709
Tssr101710 11 58220516 to 58220528 12 + TSS region transcription start site region 101710
Tssr101711 11 58220677 to 58220714 37 + TSS region transcription start site region 101711
Tssr101712 11 58220731 to 58220755 24 + TSS region transcription start site region 101712
Tssr101713 11 58221049 to 58221074 25 + TSS region transcription start site region 101713
Tssr101714 11 58221098 to 58221115 17 + TSS region transcription start site region 101714
Gm5038 11 58230480 to 58232186 1706 - pseudogene predicted gene 5038
Tssr108149 11 58231434 to 58231445 11 - TSS region transcription start site region 108149
Cpgi2923 11 58239297 to 58239783 486 CpG island CpG island 2923
Tssr108150 11 58239681 to 58239731 50 - TSS region transcription start site region 108150
4930438A08Rik 11 58274799 to 58294289 19490 + protein coding gene RIKEN cDNA 4930438A08 gene
Tssr101715 11 58274806 to 58274856 50 + TSS region transcription start site region 101715
Tssr101716 11 58275022 to 58275037 15 + TSS region transcription start site region 101716
Gm39827 11 58284300 to 58302239 17939 - lncRNA gene predicted gene, 39827
Tssr101717 11 58286440 to 58286454 14 + TSS region transcription start site region 101717
Tssr101718 11 58286461 to 58286478 17 + TSS region transcription start site region 101718
Cpgi2924 11 58293386 to 58293695 309 CpG island CpG island 2924
Cpgi2925 11 58301999 to 58303084 1085 CpG island CpG island 2925
n-TEctc10 11 58302177 to 58302248 71 - tRNA gene nuclear encoded tRNA glutamic acid 10 (anticodon CTC)
n-TLcaa3 11 58302474 to 58302580 106 - tRNA gene nuclear encoded tRNA leucine 3 (anticodon CAA)
Cpgi2926 11 58306890 to 58308024 1134 CpG island CpG island 2926
Tssr101719 11 58307055 to 58307104 49 + TSS region transcription start site region 101719
Zfp692 11 58307069 to 58314627 7558 + protein coding gene zinc finger protein 692
Tssr101720 11 58307122 to 58307143 21 + TSS region transcription start site region 101720
Tssr108151 11 58307688 to 58307701 13 - TSS region transcription start site region 108151
Zfp672 11 58315114 to 58330339 15225 - protein coding gene zinc finger protein 672
Cpgi2927 11 58316461 to 58317508 1047 CpG island CpG island 2927
Cpgi2928 11 58322678 to 58324022 1344 CpG island CpG island 2928