Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:55474079-60544090

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792 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ity2a 11 37877753 to 60511890 22634137 QTL immunity to S. typhimurium 2a
G3bp1 11 55469752 to 55500888 31136 + protein coding gene GTPase activating protein (SH3 domain) binding protein 1
Gm22884 11 55482694 to 55482833 139 + snoRNA gene predicted gene, 22884
Gm12238 11 55482706 to 55482829 123 + sense intronic lncRNA gene predicted gene 12238
Tssr101626 11 55496567 to 55496574 7 + TSS region transcription start site region 101626
Mir7652 11 55501226 to 55501281 55 + miRNA gene microRNA 7652
Glra1 11 55514239 to 55608198 93959 - protein coding gene glycine receptor, alpha 1 subunit
Gm12236 11 55514846 to 55527715 12869 + antisense lncRNA gene predicted gene 12236
Gm12237 11 55554940 to 55555409 469 + pseudogene predicted gene 12237
Cpgi2902 11 55607765 to 55608445 680 CpG island CpG island 2902
Tssr108095 11 55607819 to 55607822 3 - TSS region transcription start site region 108095
Tssr108096 11 55607900 to 55607912 12 - TSS region transcription start site region 108096
Tssr108097 11 55607917 to 55608004 87 - TSS region transcription start site region 108097
Tssr108098 11 55608189 to 55608204 15 - TSS region transcription start site region 108098
Tssr108099 11 55608210 to 55608217 7 - TSS region transcription start site region 108099
Tssr108100 11 55608281 to 55608295 14 - TSS region transcription start site region 108100
Tssr108101 11 55608547 to 55608559 12 - TSS region transcription start site region 108101
Tssr108102 11 55608563 to 55608596 33 - TSS region transcription start site region 108102
Tssr108103 11 55608597 to 55608613 16 - TSS region transcription start site region 108103
Tssr108104 11 55608622 to 55608627 5 - TSS region transcription start site region 108104
Tssr108105 11 55608629 to 55608663 34 - TSS region transcription start site region 108105
Tssr108106 11 55659130 to 55659133 3 - TSS region transcription start site region 108106
Tssr3504 11 55678210 to 55678211 1 + TSS region transcription start site region 3504
Gm45963 11 55781368 to 55963249 181881 + lncRNA gene predicted gene, 45963
D11Mit349 11 55789348 to 55789465 117 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 349
D11Mit272 11 55828082 to 55828203 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 272
D11Dcr12 11 55889987 to 55890090 103 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 12
Gm12239 11 55970355 to 56098599 128244 + antisense lncRNA gene predicted gene 12239
Nmur2 11 56024990 to 56040987 15997 - protein coding gene neuromedin U receptor 2
Cpgi2903 11 56040423 to 56040607 184 CpG island CpG island 2903
Tssr108107 11 56040985 to 56041023 38 - TSS region transcription start site region 108107
D11Mit64 11 56042051 to 56042223 172 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 64
Tssr101627 11 56072910 to 56072918 8 + TSS region transcription start site region 101627
Gm46260 11 56106459 to 56119893 13434 - lncRNA gene predicted gene, 46260
Cpgi2904 11 56117279 to 56117489 210 CpG island CpG island 2904
D11Mit131 11 56155514 to 56155663 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 131
Gm12240 11 56262855 to 56263083 228 - pseudogene predicted gene 12240
Gm24253 11 56263165 to 56263240 75 - snoRNA gene predicted gene, 24253
Tssr108108 11 56269952 to 56269963 11 - TSS region transcription start site region 108108
D11Mit313 11 56285046 to 56285167 121 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 313
Gm32500 11 56386988 to 56425531 38543 - lncRNA gene predicted gene, 32500
Cpgi2905 11 56459262 to 56459461 199 CpG island CpG island 2905
Gm12241 11 56459349 to 56460074 725 + pseudogene predicted gene 12241
Tssr108109 11 56459359 to 56459373 14 - TSS region transcription start site region 108109
Gm22603 11 56482949 to 56483044 95 + snoRNA gene predicted gene, 22603
Gm32649 11 56619118 to 56623571 4453 - lncRNA gene predicted gene, 32649
Gm46261 11 56625709 to 56665284 39575 - lncRNA gene predicted gene, 46261
D11Mit142 11 56684724 to 56684873 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 142
Gm39826 11 56719507 to 56726642 7135 - lncRNA gene predicted gene, 39826
D11Mit274 11 56741660 to 56741773 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 274
D11Dcr13 11 56934669 to 56934764 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 13
D11Mit164 11 56973201 to 56973332 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 164
Tssr101628 11 57011559 to 57011587 28 + TSS region transcription start site region 101628
Gria1 11 57011571 to 57330244 318673 + protein coding gene glutamate receptor, ionotropic, AMPA1 (alpha 1)
Tssr101629 11 57011707 to 57011718 11 + TSS region transcription start site region 101629
Tssr101630 11 57011724 to 57011735 11 + TSS region transcription start site region 101630
Tssr101631 11 57011743 to 57011782 39 + TSS region transcription start site region 101631
Tssr101632 11 57011798 to 57011827 29 + TSS region transcription start site region 101632
Tssr101633 11 57011832 to 57011843 11 + TSS region transcription start site region 101633
Tssr101634 11 57011945 to 57011946 1 + TSS region transcription start site region 101634
Tssr101635 11 57012747 to 57012785 38 + TSS region transcription start site region 101635
Tssr108110 11 57112423 to 57112458 35 - TSS region transcription start site region 108110
Tssr101636 11 57128903 to 57128920 17 + TSS region transcription start site region 101636
Tssr108111 11 57199389 to 57199392 3 - TSS region transcription start site region 108111
Gm12242 11 57449107 to 57449844 737 + pseudogene predicted gene 12242
Tssr108112 11 57481783 to 57481787 4 - TSS region transcription start site region 108112
Fam114a2 11 57482993 to 57518617 35624 - protein coding gene family with sequence similarity 114, member A2
Tssr108113 11 57507041 to 57507052 11 - TSS region transcription start site region 108113
Tssr108114 11 57507102 to 57507106 4 - TSS region transcription start site region 108114
Tssr108115 11 57507110 to 57507115 5 - TSS region transcription start site region 108115
Tssr108116 11 57507129 to 57507134 5 - TSS region transcription start site region 108116
Tssr3505 11 57513856 to 57513857 1 - TSS region transcription start site region 3505
Cpgi2906 11 57518044 to 57519037 993 CpG island CpG island 2906
Tssr101637 11 57518241 to 57518249 8 + TSS region transcription start site region 101637
Tssr108117 11 57518596 to 57518655 59 - TSS region transcription start site region 108117
Tssr101638 11 57518657 to 57518722 65 + TSS region transcription start site region 101638
Mfap3 11 57518664 to 57533815 15151 + protein coding gene microfibrillar-associated protein 3
Gm12243 11 57572512 to 57574595 2083 + lincRNA gene predicted gene 12243
4930486A15Rik 11 57601576 to 57602671 1095 unclassified gene RIKEN cDNA 4930486A15 gene
4933424L21Rik 11 57623698 to 57649494 25796 - antisense lncRNA gene RIKEN cDNA 4933424L21 gene
Tssr101639 11 57644590 to 57644617 27 + TSS region transcription start site region 101639
Cpgi2907 11 57644619 to 57646030 1411 CpG island CpG island 2907
Tssr101640 11 57645417 to 57645489 72 + TSS region transcription start site region 101640
Galnt10 11 57645442 to 57787501 142059 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 10
Tssr108118 11 57649465 to 57649498 33 - TSS region transcription start site region 108118
Tssr101641 11 57649568 to 57649571 3 + TSS region transcription start site region 101641
4933426K07Rik 11 57655415 to 57657826 2411 - antisense lncRNA gene RIKEN cDNA 4933426K07 gene
Tssr108119 11 57657805 to 57657839 34 - TSS region transcription start site region 108119
5830435N06Rik 11 57665726 to 57667169 1443 unclassified gene RIKEN cDNA 5830435N06 gene
Gm46282 11 57706093 to 57710163 4070 + lncRNA gene predicted gene, 46282
Tssr101642 11 57708976 to 57708997 21 + TSS region transcription start site region 101642
Tssr101643 11 57717311 to 57717314 3 + TSS region transcription start site region 101643
Gm24582 11 57741300 to 57741402 102 + snRNA gene predicted gene, 24582
n-R5s69 11 57764427 to 57764545 118 + rRNA gene nuclear encoded rRNA 5S 69
2010001A14Rik 11 57795499 to 57801417 5918 - lncRNA gene RIKEN cDNA 2010001A14 gene
Cpgi2908 11 57800700 to 57802833 2133 CpG island CpG island 2908
Tssr108120 11 57801411 to 57801432 21 - TSS region transcription start site region 108120
Tssr108121 11 57801436 to 57801453 17 - TSS region transcription start site region 108121
Tssr108122 11 57801459 to 57801487 28 - TSS region transcription start site region 108122
Tssr101644 11 57801575 to 57801649 74 + TSS region transcription start site region 101644
Sap30l 11 57801637 to 57810217 8580 + protein coding gene SAP30-like
Tssr101645 11 57807330 to 57807332 2 + TSS region transcription start site region 101645
Cpgi2909 11 57825040 to 57825240 200 CpG island CpG island 2909
Cpgi2910 11 57827530 to 57828360 830 CpG island CpG island 2910
Hand1 11 57828713 to 57832147 3434 - protein coding gene heart and neural crest derivatives expressed 1
Tssr108123 11 57828956 to 57828963 7 - TSS region transcription start site region 108123
Tssr108124 11 57829017 to 57829020 3 - TSS region transcription start site region 108124
Tssr108125 11 57829049 to 57829065 16 - TSS region transcription start site region 108125
Cpgi2911 11 57829073 to 57829742 669 CpG island CpG island 2911
Tssr108126 11 57829235 to 57829246 11 - TSS region transcription start site region 108126
Tssr3506 11 57829270 to 57829271 1 - TSS region transcription start site region 3506
Tssr108127 11 57829308 to 57829313 5 - TSS region transcription start site region 108127
Tssr108128 11 57829315 to 57829325 10 - TSS region transcription start site region 108128
Tssr108129 11 57829446 to 57829460 14 - TSS region transcription start site region 108129
Cpgi2912 11 57831235 to 57832019 784 CpG island CpG island 2912
Tssr101646 11 57831686 to 57831689 3 + TSS region transcription start site region 101646
Tssr101647 11 57831694 to 57831703 9 + TSS region transcription start site region 101647
Tssr101648 11 57831707 to 57831720 13 + TSS region transcription start site region 101648
Tssr108130 11 57831763 to 57831766 3 - TSS region transcription start site region 108130
Tssr108131 11 57832004 to 57832021 17 - TSS region transcription start site region 108131
Tssr108132 11 57832084 to 57832095 11 - TSS region transcription start site region 108132
Tssr108133 11 57832142 to 57832147 5 - TSS region transcription start site region 108133
Tssr108134 11 57832679 to 57832690 11 - TSS region transcription start site region 108134
Cpgi2913 11 57832682 to 57832968 286 CpG island CpG island 2913
Cpgi2914 11 57833524 to 57833966 442 CpG island CpG island 2914
Cpgi2915 11 57836975 to 57837266 291 CpG island CpG island 2915
Gm32915 11 57839064 to 57841678 2614 + lncRNA gene predicted gene, 32915
Gm33026 11 57856987 to 57869386 12399 - lncRNA gene predicted gene, 33026
Gm12244 11 57880896 to 57881186 290 + pseudogene predicted gene 12244
Gm33078 11 57911741 to 57923298 11557 + lncRNA gene predicted gene, 33078
D11Mit143 11 57914737 to 57914828 91 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 143
Gm12245 11 57948729 to 57949085 356 - pseudogene predicted gene 12245
Cpgi2916 11 57962395 to 57963034 639 CpG island CpG island 2916
Tssr3507 11 57963657 to 57963682 25 - TSS region transcription start site region 3507
Gm26025 11 57969342 to 57969612 270 + unclassified non-coding RNA gene predicted gene, 26025
Gm12249 11 57970244 to 57973134 2890 - lincRNA gene predicted gene 12249
Tssr101649 11 57973184 to 57973199 15 + TSS region transcription start site region 101649
Tssr101650 11 57973256 to 57973265 9 + TSS region transcription start site region 101650
Tssr101651 11 57973402 to 57973429 27 + TSS region transcription start site region 101651
Cpgi2917 11 58008392 to 58010351 1959 CpG island CpG island 2917
Tssr101652 11 58008861 to 58008935 74 + TSS region transcription start site region 101652
Tssr101653 11 58008937 to 58008959 22 + TSS region transcription start site region 101653
Tssr101654 11 58008966 to 58008987 21 + TSS region transcription start site region 101654
Larp1 11 58009064 to 58062034 52970 + protein coding gene La ribonucleoprotein domain family, member 1
Tssr101655 11 58009079 to 58009090 11 + TSS region transcription start site region 101655
Tssr101656 11 58009131 to 58009144 13 + TSS region transcription start site region 101656
Tssr101657 11 58009161 to 58009206 45 + TSS region transcription start site region 101657
Tssr101658 11 58009575 to 58009584 9 + TSS region transcription start site region 101658
2510010K19Rik 11 58009918 to 58010175 257 unclassified gene RIKEN cDNA 2510010K19 gene
Tssr101659 11 58009989 to 58009999 10 + TSS region transcription start site region 101659
Tssr101660 11 58010019 to 58010047 28 + TSS region transcription start site region 101660
Tssr108135 11 58010628 to 58010637 9 - TSS region transcription start site region 108135
Tssr101661 11 58012531 to 58012535 4 + TSS region transcription start site region 101661
Tssr101662 11 58040413 to 58040422 9 + TSS region transcription start site region 101662
Tssr101663 11 58043104 to 58043109 5 + TSS region transcription start site region 101663
Tssr101664 11 58049595 to 58049643 48 + TSS region transcription start site region 101664
Tssr101665 11 58049647 to 58049659 12 + TSS region transcription start site region 101665
Tssr101666 11 58051306 to 58051326 20 + TSS region transcription start site region 101666
Tssr101667 11 58051335 to 58051345 10 + TSS region transcription start site region 101667
Tssr101668 11 58059226 to 58059248 22 + TSS region transcription start site region 101668
Tssr101669 11 58059321 to 58059337 16 + TSS region transcription start site region 101669
Tssr101670 11 58059382 to 58059427 45 + TSS region transcription start site region 101670
Tssr101671 11 58060999 to 58061011 12 + TSS region transcription start site region 101671
Gm12248 11 58063671 to 58093175 29504 - protein coding gene predicted gene 12248
Tssr108136 11 58073018 to 58073031 13 - TSS region transcription start site region 108136
Tssr108137 11 58073036 to 58073047 11 - TSS region transcription start site region 108137
Tssr101672 11 58092788 to 58092817 29 + TSS region transcription start site region 101672
Tssr108138 11 58093091 to 58093109 18 - TSS region transcription start site region 108138
Tssr108139 11 58093110 to 58093151 41 - TSS region transcription start site region 108139
Tssr101673 11 58093236 to 58093257 21 + TSS region transcription start site region 101673
Cpgi2918 11 58097093 to 58097256 163 CpG island CpG island 2918
Gm12247 11 58097104 to 58097773 669 - pseudogene predicted gene 12247
Cpgi2919 11 58097724 to 58097905 181 CpG island CpG island 2919
Tssr101674 11 58102782 to 58102814 32 + TSS region transcription start site region 101674
Tssr101675 11 58102862 to 58102874 12 + TSS region transcription start site region 101675
Tssr101676 11 58102906 to 58102917 11 + TSS region transcription start site region 101676
Cpgi2920 11 58103298 to 58104831 1533 CpG island CpG island 2920
Tssr101677 11 58103970 to 58104027 57 + TSS region transcription start site region 101677
Tssr101678 11 58104031 to 58104050 19 + TSS region transcription start site region 101678
Tssr101679 11 58104051 to 58104081 30 + TSS region transcription start site region 101679
Tssr101680 11 58104082 to 58104137 55 + TSS region transcription start site region 101680
Tssr101681 11 58104138 to 58104191 53 + TSS region transcription start site region 101681
Cnot8 11 58104153 to 58118594 14441 + protein coding gene CCR4-NOT transcription complex, subunit 8
Tssr101682 11 58104239 to 58104280 41 + TSS region transcription start site region 101682
Tssr101683 11 58117726 to 58117750 24 + TSS region transcription start site region 101683
Gemin5 11 58120002 to 58168539 48537 - protein coding gene gem nuclear organelle associated protein 5
Gm33350 11 58126007 to 58136198 10191 + lncRNA gene predicted gene, 33350
Gm12246 11 58126068 to 58128512 2444 + antisense lncRNA gene predicted gene 12246
Tssr108140 11 58139520 to 58139534 14 - TSS region transcription start site region 108140
Tssr108141 11 58139540 to 58139551 11 - TSS region transcription start site region 108141
Cpgi2921 11 58167990 to 58168866 876 CpG island CpG island 2921
Tssr108142 11 58168467 to 58168544 77 - TSS region transcription start site region 108142
Cpgi2922 11 58171518 to 58172016 498 CpG island CpG island 2922
Tssr101684 11 58171648 to 58171688 40 + TSS region transcription start site region 101684
Mrpl22 11 58171661 to 58179565 7904 + protein coding gene mitochondrial ribosomal protein L22
Tssr108143 11 58171996 to 58172005 9 - TSS region transcription start site region 108143
Tssr101685 11 58183795 to 58183817 22 + TSS region transcription start site region 101685
Tssr101686 11 58183826 to 58183871 45 + TSS region transcription start site region 101686
Tssr101687 11 58183886 to 58183897 11 + TSS region transcription start site region 101687
Tssr101688 11 58183918 to 58183931 13 + TSS region transcription start site region 101688