Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:55439118-57803571

Filter by:
113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atox1 11 55446643 to 55461138 14495 - protein coding gene antioxidant 1 copper chaperone
Cpgi2900 11 55460758 to 55461439 681 CpG island CpG island 2900
Tssr108091 11 55461131 to 55461156 25 - TSS region transcription start site region 108091
Tssr108092 11 55461166 to 55461177 11 - TSS region transcription start site region 108092
Tssr108093 11 55461179 to 55461190 11 - TSS region transcription start site region 108093
Gm12235 11 55463840 to 55464009 169 - pseudogene predicted gene 12235
Cpgi2901 11 55468841 to 55470446 1605 CpG island CpG island 2901
Tssr108094 11 55469145 to 55469185 40 - TSS region transcription start site region 108094
Tssr101622 11 55469648 to 55469659 11 + TSS region transcription start site region 101622
Tssr101623 11 55469677 to 55469716 39 + TSS region transcription start site region 101623
Tssr101624 11 55469724 to 55469742 18 + TSS region transcription start site region 101624
G3bp1 11 55469752 to 55500888 31136 + protein coding gene GTPase activating protein (SH3 domain) binding protein 1
Tssr101625 11 55470165 to 55470181 16 + TSS region transcription start site region 101625
Gm22884 11 55482694 to 55482833 139 + snoRNA gene predicted gene, 22884
Gm12238 11 55482706 to 55482829 123 + sense intronic lncRNA gene predicted gene 12238
Tssr101626 11 55496567 to 55496574 7 + TSS region transcription start site region 101626
Mir7652 11 55501226 to 55501281 55 + miRNA gene microRNA 7652
Glra1 11 55514239 to 55608198 93959 - protein coding gene glycine receptor, alpha 1 subunit
Gm12236 11 55514846 to 55527715 12869 + antisense lncRNA gene predicted gene 12236
Gm12237 11 55554940 to 55555409 469 + pseudogene predicted gene 12237
Cpgi2902 11 55607765 to 55608445 680 CpG island CpG island 2902
Tssr108095 11 55607819 to 55607822 3 - TSS region transcription start site region 108095
Tssr108096 11 55607900 to 55607912 12 - TSS region transcription start site region 108096
Tssr108097 11 55607917 to 55608004 87 - TSS region transcription start site region 108097
Tssr108098 11 55608189 to 55608204 15 - TSS region transcription start site region 108098
Tssr108099 11 55608210 to 55608217 7 - TSS region transcription start site region 108099
Tssr108100 11 55608281 to 55608295 14 - TSS region transcription start site region 108100
Tssr108101 11 55608547 to 55608559 12 - TSS region transcription start site region 108101
Tssr108102 11 55608563 to 55608596 33 - TSS region transcription start site region 108102
Tssr108103 11 55608597 to 55608613 16 - TSS region transcription start site region 108103
Tssr108104 11 55608622 to 55608627 5 - TSS region transcription start site region 108104
Tssr108105 11 55608629 to 55608663 34 - TSS region transcription start site region 108105
Tssr108106 11 55659130 to 55659133 3 - TSS region transcription start site region 108106
Tssr3504 11 55678210 to 55678211 1 + TSS region transcription start site region 3504
Gm45963 11 55781368 to 55963249 181881 + lncRNA gene predicted gene, 45963
D11Mit349 11 55789348 to 55789465 117 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 349
D11Mit272 11 55828082 to 55828203 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 272
D11Dcr12 11 55889987 to 55890090 103 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 12
Gm12239 11 55970355 to 56098599 128244 + antisense lncRNA gene predicted gene 12239
Nmur2 11 56024990 to 56040987 15997 - protein coding gene neuromedin U receptor 2
Cpgi2903 11 56040423 to 56040607 184 CpG island CpG island 2903
Tssr108107 11 56040985 to 56041023 38 - TSS region transcription start site region 108107
D11Mit64 11 56042051 to 56042223 172 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 64
Tssr101627 11 56072910 to 56072918 8 + TSS region transcription start site region 101627
Gm46260 11 56106459 to 56119893 13434 - lncRNA gene predicted gene, 46260
Cpgi2904 11 56117279 to 56117489 210 CpG island CpG island 2904
D11Mit131 11 56155514 to 56155663 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 131
Gm12240 11 56262855 to 56263083 228 - pseudogene predicted gene 12240
Gm24253 11 56263165 to 56263240 75 - snoRNA gene predicted gene, 24253
Tssr108108 11 56269952 to 56269963 11 - TSS region transcription start site region 108108
D11Mit313 11 56285046 to 56285167 121 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 313
Gm32500 11 56386988 to 56425531 38543 - lncRNA gene predicted gene, 32500
Cpgi2905 11 56459262 to 56459461 199 CpG island CpG island 2905
Gm12241 11 56459349 to 56460074 725 + pseudogene predicted gene 12241
Tssr108109 11 56459359 to 56459373 14 - TSS region transcription start site region 108109
Gm22603 11 56482949 to 56483044 95 + snoRNA gene predicted gene, 22603
Gm32649 11 56619118 to 56623571 4453 - lncRNA gene predicted gene, 32649
Gm46261 11 56625709 to 56665284 39575 - lncRNA gene predicted gene, 46261
D11Mit142 11 56684724 to 56684873 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 142
Gm39826 11 56719507 to 56726642 7135 - lncRNA gene predicted gene, 39826
D11Mit274 11 56741660 to 56741773 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 274
D11Dcr13 11 56934669 to 56934764 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 13
D11Mit164 11 56973201 to 56973332 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 164
Tssr101628 11 57011559 to 57011587 28 + TSS region transcription start site region 101628
Gria1 11 57011571 to 57330244 318673 + protein coding gene glutamate receptor, ionotropic, AMPA1 (alpha 1)
Tssr101629 11 57011707 to 57011718 11 + TSS region transcription start site region 101629
Tssr101630 11 57011724 to 57011735 11 + TSS region transcription start site region 101630
Tssr101631 11 57011743 to 57011782 39 + TSS region transcription start site region 101631
Tssr101632 11 57011798 to 57011827 29 + TSS region transcription start site region 101632
Tssr101633 11 57011832 to 57011843 11 + TSS region transcription start site region 101633
Tssr101634 11 57011945 to 57011946 1 + TSS region transcription start site region 101634
Tssr101635 11 57012747 to 57012785 38 + TSS region transcription start site region 101635
Tssr108110 11 57112423 to 57112458 35 - TSS region transcription start site region 108110
Tssr101636 11 57128903 to 57128920 17 + TSS region transcription start site region 101636
Tssr108111 11 57199389 to 57199392 3 - TSS region transcription start site region 108111
Gm12242 11 57449107 to 57449844 737 + pseudogene predicted gene 12242
Tssr108112 11 57481783 to 57481787 4 - TSS region transcription start site region 108112
Fam114a2 11 57482993 to 57518617 35624 - protein coding gene family with sequence similarity 114, member A2
Tssr108113 11 57507041 to 57507052 11 - TSS region transcription start site region 108113
Tssr108114 11 57507102 to 57507106 4 - TSS region transcription start site region 108114
Tssr108115 11 57507110 to 57507115 5 - TSS region transcription start site region 108115
Tssr108116 11 57507129 to 57507134 5 - TSS region transcription start site region 108116
Tssr3505 11 57513856 to 57513857 1 - TSS region transcription start site region 3505
Cpgi2906 11 57518044 to 57519037 993 CpG island CpG island 2906
Tssr101637 11 57518241 to 57518249 8 + TSS region transcription start site region 101637
Tssr108117 11 57518596 to 57518655 59 - TSS region transcription start site region 108117
Tssr101638 11 57518657 to 57518722 65 + TSS region transcription start site region 101638
Mfap3 11 57518664 to 57533815 15151 + protein coding gene microfibrillar-associated protein 3
Gm12243 11 57572512 to 57574595 2083 + lincRNA gene predicted gene 12243
4930486A15Rik 11 57601576 to 57602671 1095 unclassified gene RIKEN cDNA 4930486A15 gene
4933424L21Rik 11 57623698 to 57649494 25796 - antisense lncRNA gene RIKEN cDNA 4933424L21 gene
Tssr101639 11 57644590 to 57644617 27 + TSS region transcription start site region 101639
Cpgi2907 11 57644619 to 57646030 1411 CpG island CpG island 2907
Tssr101640 11 57645417 to 57645489 72 + TSS region transcription start site region 101640
Galnt10 11 57645442 to 57787501 142059 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 10
Tssr108118 11 57649465 to 57649498 33 - TSS region transcription start site region 108118
Tssr101641 11 57649568 to 57649571 3 + TSS region transcription start site region 101641
4933426K07Rik 11 57655415 to 57657826 2411 - antisense lncRNA gene RIKEN cDNA 4933426K07 gene
Tssr108119 11 57657805 to 57657839 34 - TSS region transcription start site region 108119
5830435N06Rik 11 57665726 to 57667169 1443 unclassified gene RIKEN cDNA 5830435N06 gene
Gm46282 11 57706093 to 57710163 4070 + lncRNA gene predicted gene, 46282
Tssr101642 11 57708976 to 57708997 21 + TSS region transcription start site region 101642
Tssr101643 11 57717311 to 57717314 3 + TSS region transcription start site region 101643
Gm24582 11 57741300 to 57741402 102 + snRNA gene predicted gene, 24582
n-R5s69 11 57764427 to 57764545 118 + rRNA gene nuclear encoded rRNA 5S 69
2010001A14Rik 11 57795499 to 57801417 5918 - lncRNA gene RIKEN cDNA 2010001A14 gene
Cpgi2908 11 57800700 to 57802833 2133 CpG island CpG island 2908
Tssr108120 11 57801411 to 57801432 21 - TSS region transcription start site region 108120
Tssr108121 11 57801436 to 57801453 17 - TSS region transcription start site region 108121
Tssr108122 11 57801459 to 57801487 28 - TSS region transcription start site region 108122
Tssr101644 11 57801575 to 57801649 74 + TSS region transcription start site region 101644
Sap30l 11 57801637 to 57810217 8580 + protein coding gene SAP30-like
Tmc1m2 11 114267131 to 56973201 -57293930 QTL Tmc1 modifier 2