Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:5533983-5877717

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc117 11 5528887 to 5542187 13300 - protein coding gene coiled-coil domain containing 117
Cpgi2536 11 5541475 to 5542378 903 CpG island CpG island 2536
Tssr106628 11 5541768 to 5541774 6 - TSS region transcription start site region 106628
Tssr100185 11 5541872 to 5541893 21 + TSS region transcription start site region 100185
Tssr100186 11 5541896 to 5541929 33 + TSS region transcription start site region 100186
Tssr100187 11 5541932 to 5541942 10 + TSS region transcription start site region 100187
Tssr106629 11 5542139 to 5542170 31 - TSS region transcription start site region 106629
Tssr106630 11 5542177 to 5542219 42 - TSS region transcription start site region 106630
Tssr106631 11 5542226 to 5542243 17 - TSS region transcription start site region 106631
Tssr106632 11 5542244 to 5542267 23 - TSS region transcription start site region 106632
Tssr100188 11 5542441 to 5542446 5 + TSS region transcription start site region 100188
Gm22471 11 5560606 to 5560735 129 - snoRNA gene predicted gene, 22471
Gm3186 11 5563940 to 5564560 620 - pseudogene predicted gene 3186
Gm39573 11 5565391 to 5569118 3727 - lncRNA gene predicted gene, 39573
Tssr100189 11 5569679 to 5569690 11 + TSS region transcription start site region 100189
Ankrd36 11 5569684 to 5689337 119653 + protein coding gene ankyrin repeat domain 36
Tssr100190 11 5574107 to 5574115 8 + TSS region transcription start site region 100190
Tssr100191 11 5574156 to 5574167 11 + TSS region transcription start site region 100191
Tssr100192 11 5595435 to 5595438 3 + TSS region transcription start site region 100192
Tssr100193 11 5628740 to 5628754 14 + TSS region transcription start site region 100193
Tssr100194 11 5628756 to 5628767 11 + TSS region transcription start site region 100194
Cpgi2537 11 5634053 to 5634549 496 CpG island CpG island 2537
Gm11964 11 5634139 to 5634582 443 + pseudogene predicted gene 11964
Gm11965 11 5678356 to 5678632 276 - pseudogene predicted gene 11965
Mrps24 11 5703983 to 5707717 3734 - protein coding gene mitochondrial ribosomal protein S24
Cpgi2538 11 5706997 to 5707885 888 CpG island CpG island 2538
Tssr106633 11 5707658 to 5707708 50 - TSS region transcription start site region 106633
Tssr106634 11 5707729 to 5707732 3 - TSS region transcription start site region 106634
Urgcp 11 5713417 to 5762376 48959 - protein coding gene upregulator of cell proliferation
Tssr106635 11 5739366 to 5739369 3 - TSS region transcription start site region 106635
Cpgi2539 11 5740598 to 5741522 924 CpG island CpG island 2539
Tssr100195 11 5740740 to 5740755 15 + TSS region transcription start site region 100195
Tssr106636 11 5741117 to 5741139 22 - TSS region transcription start site region 106636
Tssr106637 11 5741141 to 5741182 41 - TSS region transcription start site region 106637
5730405O12Rik 11 5755006 to 5758298 3292 unclassified gene RIKEN cDNA 5730405O12 gene
Cpgi2540 11 5761752 to 5762817 1065 CpG island CpG island 2540
Tssr106638 11 5762044 to 5762053 9 - TSS region transcription start site region 106638
Tssr100196 11 5762121 to 5762182 61 + TSS region transcription start site region 100196
Ube2d-ps 11 5762150 to 5784710 22560 + pseudogene ubiquitin-conjugating enzyme E2D, pseudogene
Tssr106639 11 5762358 to 5762404 46 - TSS region transcription start site region 106639
Tssr100197 11 5784790 to 5784794 4 + TSS region transcription start site region 100197
Cpgi2541 11 5788133 to 5789123 990 CpG island CpG island 2541
Tssr106640 11 5788262 to 5788276 14 - TSS region transcription start site region 106640
Tssr106641 11 5788358 to 5788434 76 - TSS region transcription start site region 106641
Tssr100198 11 5788480 to 5788560 80 + TSS region transcription start site region 100198
Dbnl 11 5788488 to 5800962 12474 + protein coding gene drebrin-like
Tssr100199 11 5793709 to 5793726 17 + TSS region transcription start site region 100199
Tssr100200 11 5797511 to 5797526 15 + TSS region transcription start site region 100200
Tssr100201 11 5797540 to 5797554 14 + TSS region transcription start site region 100201
Tssr100202 11 5797987 to 5798005 18 + TSS region transcription start site region 100202
Tssr100203 11 5799284 to 5799305 21 + TSS region transcription start site region 100203
Tssr100204 11 5800147 to 5800184 37 + TSS region transcription start site region 100204
Pgam2 11 5801640 to 5803733 2093 - protein coding gene phosphoglycerate mutase 2
Tssr100205 11 5803269 to 5803280 11 + TSS region transcription start site region 100205
Tssr106642 11 5803319 to 5803347 28 - TSS region transcription start site region 106642
Tssr106643 11 5803558 to 5803569 11 - TSS region transcription start site region 106643
Tssr106644 11 5803683 to 5803689 6 - TSS region transcription start site region 106644
Tssr106645 11 5803706 to 5803728 22 - TSS region transcription start site region 106645
Tssr106646 11 5803735 to 5803759 24 - TSS region transcription start site region 106646
Gm11966 11 5818497 to 5818583 86 - pseudogene predicted gene 11966
Polm 11 5827860 to 5838016 10156 - protein coding gene polymerase (DNA directed), mu
Cpgi2542 11 5837314 to 5838064 750 CpG island CpG island 2542
Tssr106647 11 5837727 to 5837736 9 - TSS region transcription start site region 106647
Tssr106648 11 5837745 to 5837758 13 - TSS region transcription start site region 106648
Tssr106649 11 5837760 to 5837835 75 - TSS region transcription start site region 106649
Tssr100206 11 5849316 to 5849326 10 + TSS region transcription start site region 100206
Cpgi2543 11 5861553 to 5862550 997 CpG island CpG island 2543
Tssr100207 11 5861868 to 5861879 11 + TSS region transcription start site region 100207
Tssr100208 11 5861886 to 5861966 80 + TSS region transcription start site region 100208
Aebp1 11 5861947 to 5872088 10141 + protein coding gene AE binding protein 1
Tssr100209 11 5861976 to 5861989 13 + TSS region transcription start site region 100209
Tssr106650 11 5862294 to 5862301 7 - TSS region transcription start site region 106650
Tssr100210 11 5863029 to 5863048 19 + TSS region transcription start site region 100210
Tssr106651 11 5863967 to 5864003 36 - TSS region transcription start site region 106651
Tssr100211 11 5863978 to 5864003 25 + TSS region transcription start site region 100211
Tssr100212 11 5864217 to 5864241 24 + TSS region transcription start site region 100212
Tssr106652 11 5866968 to 5866990 22 - TSS region transcription start site region 106652
Cpgi2544 11 5869422 to 5869639 217 CpG island CpG island 2544
Tssr100213 11 5870551 to 5870562 11 + TSS region transcription start site region 100213
Tssr100214 11 5871626 to 5871648 22 + TSS region transcription start site region 100214
Tssr100215 11 5871771 to 5871782 11 + TSS region transcription start site region 100215
Pold2 11 5872180 to 5878256 6076 - protein coding gene polymerase (DNA directed), delta 2, regulatory subunit
Tssr106653 11 5876880 to 5876909 29 - TSS region transcription start site region 106653