Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:55134319-55274386

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20 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc36a3 11 55124815 to 55151708 26893 - protein coding gene solute carrier family 36 (proton/amino acid symporter), member 3
Tssr101609 11 55136991 to 55137019 28 + TSS region transcription start site region 101609
Tssr101610 11 55137023 to 55137033 10 + TSS region transcription start site region 101610
Slc36a3os 11 55137044 to 55140193 3149 + antisense lncRNA gene solute carrier family 36 (proton/amino acid symporter), member 3, opposite strand
Tssr108045 11 55147188 to 55147210 22 - TSS region transcription start site region 108045
Gm31688 11 55149964 to 55158365 8401 + lncRNA gene predicted gene, 31688
Tssr108046 11 55151679 to 55151691 12 - TSS region transcription start site region 108046
Tssr108047 11 55151698 to 55151699 1 - TSS region transcription start site region 108047
Tssr108048 11 55151703 to 55151712 9 - TSS region transcription start site region 108048
Slc36a2 11 55158470 to 55185077 26607 - protein coding gene solute carrier family 36 (proton/amino acid symporter), member 2
Tssr108049 11 55185029 to 55185082 53 - TSS region transcription start site region 108049
Slc36a1os 11 55191719 to 55197682 5963 - antisense lncRNA gene solute carrier family 36 (proton/amino acid symporter), member 1, opposite strand
Cpgi2898 11 55204157 to 55204986 829 CpG island CpG island 2898
Tssr101611 11 55204319 to 55204386 67 + TSS region transcription start site region 101611
Slc36a1 11 55204350 to 55236330 31980 + protein coding gene solute carrier family 36 (proton/amino acid symporter), member 1
Tssr101612 11 55204396 to 55204412 16 + TSS region transcription start site region 101612
Tssr101613 11 55213783 to 55213814 31 + TSS region transcription start site region 101613
Tssr101614 11 55217709 to 55217732 23 + TSS region transcription start site region 101614
Fat2 11 55250609 to 55336564 85955 - protein coding gene FAT atypical cadherin 2
Cpgi2899 11 55262417 to 55262808 391 CpG island CpG island 2899