Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:54954648-55984659

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(11Sparc-Gpx3)91Anjm 11 54902854 to 55420080 517226 cytogenetic marker deletion, Chr 11, Andrew N J McKenzie
Tnip1 11 54910785 to 54962917 52132 - protein coding gene TNFAIP3 interacting protein 1
Cpgi2894 11 54955592 to 54956391 799 CpG island CpG island 2894
Tssr101579 11 54955817 to 54955839 22 + TSS region transcription start site region 101579
Tssr108028 11 54956033 to 54956040 7 - TSS region transcription start site region 108028
Tssr108029 11 54956049 to 54956115 66 - TSS region transcription start site region 108029
Tssr101580 11 54956195 to 54956202 7 + TSS region transcription start site region 101580
Tssr101581 11 54956224 to 54956240 16 + TSS region transcription start site region 101581
Tssr101582 11 54958660 to 54958664 4 + TSS region transcription start site region 101582
Tssr101583 11 54960533 to 54960552 19 + TSS region transcription start site region 101583
Tssr101584 11 54960561 to 54960573 12 + TSS region transcription start site region 101584
Tssr101585 11 54961702 to 54961709 7 + TSS region transcription start site region 101585
Tssr101586 11 54961737 to 54961756 19 + TSS region transcription start site region 101586
Tssr108030 11 54962873 to 54962874 1 - TSS region transcription start site region 108030
Tssr108031 11 54962903 to 54962953 50 - TSS region transcription start site region 108031
Tssr108032 11 54971952 to 54971954 2 - TSS region transcription start site region 108032
Tssr108033 11 54973771 to 54973801 30 - TSS region transcription start site region 108033
Anxa6 11 54979108 to 55033445 54337 - protein coding gene annexin A6
Tssr108034 11 54982744 to 54982749 5 - TSS region transcription start site region 108034
Tssr108035 11 54985164 to 54985178 14 - TSS region transcription start site region 108035
Gm19911 11 55019932 to 55028866 8934 + lncRNA gene predicted gene, 19911
Tssr108036 11 55021815 to 55021863 48 - TSS region transcription start site region 108036
Cpgi2895 11 55033113 to 55033608 495 CpG island CpG island 2895
Tssr108037 11 55033398 to 55033461 63 - TSS region transcription start site region 108037
Ccdc69 11 55049731 to 55078131 28400 - protein coding gene coiled-coil domain containing 69
Cpgi2896 11 55077509 to 55078381 872 CpG island CpG island 2896
Tssr108038 11 55078075 to 55078119 44 - TSS region transcription start site region 108038
Tssr108039 11 55078120 to 55078145 25 - TSS region transcription start site region 108039
Cpgi2897 11 55097458 to 55098609 1151 CpG island CpG island 2897
Tssr101587 11 55097968 to 55097979 11 + TSS region transcription start site region 101587
Tssr101588 11 55098042 to 55098102 60 + TSS region transcription start site region 101588
Tssr101589 11 55098104 to 55098129 25 + TSS region transcription start site region 101589
Gm2a 11 55098115 to 55113029 14914 + protein coding gene GM2 ganglioside activator protein
Tssr101590 11 55098132 to 55098150 18 + TSS region transcription start site region 101590
Tssr101591 11 55103544 to 55103562 18 + TSS region transcription start site region 101591
Tssr101592 11 55103708 to 55103724 16 + TSS region transcription start site region 101592
Tssr101593 11 55109013 to 55109056 43 + TSS region transcription start site region 101593
Tssr101594 11 55109372 to 55109383 11 + TSS region transcription start site region 101594
Tssr108040 11 55109417 to 55109445 28 - TSS region transcription start site region 108040
Tssr101595 11 55109613 to 55109622 9 + TSS region transcription start site region 101595
Tssr101596 11 55109640 to 55109642 2 + TSS region transcription start site region 101596
Tssr108041 11 55109666 to 55109691 25 - TSS region transcription start site region 108041
Tssr101597 11 55109705 to 55109716 11 + TSS region transcription start site region 101597
Tssr108042 11 55109724 to 55109751 27 - TSS region transcription start site region 108042
Tssr101598 11 55109807 to 55109826 19 + TSS region transcription start site region 101598
Tssr101599 11 55109835 to 55109846 11 + TSS region transcription start site region 101599
Tssr101600 11 55110090 to 55110097 7 + TSS region transcription start site region 101600
Tssr101601 11 55110167 to 55110172 5 + TSS region transcription start site region 101601
Tssr101602 11 55110212 to 55110217 5 + TSS region transcription start site region 101602
Tssr101603 11 55110302 to 55110329 27 + TSS region transcription start site region 101603
Tssr101604 11 55110337 to 55110356 19 + TSS region transcription start site region 101604
Tssr101605 11 55110397 to 55110417 20 + TSS region transcription start site region 101605
Gm12231 11 55118101 to 55118795 694 - pseudogene predicted gene 12231
Tssr108043 11 55118850 to 55118888 38 - TSS region transcription start site region 108043
D11Dcr11 11 55120012 to 55120110 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 11
Mup-ps22 11 55123695 to 55123937 242 + pseudogene major urinary protein, pseudogene 22
Tssr101606 11 55123799 to 55123810 11 + TSS region transcription start site region 101606
Tssr101607 11 55123926 to 55123949 23 + TSS region transcription start site region 101607
Tssr108044 11 55123963 to 55123981 18 - TSS region transcription start site region 108044
Slc36a3 11 55124815 to 55151708 26893 - protein coding gene solute carrier family 36 (proton/amino acid symporter), member 3
D11Mit207 11 55125289 to 55125383 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 207
Nwa3 11 55125289 to 55125383 94 QTL New Zealand White autoimmunity 3
Tssr101608 11 55131656 to 55131704 48 + TSS region transcription start site region 101608
Tssr101609 11 55136991 to 55137019 28 + TSS region transcription start site region 101609
Tssr101610 11 55137023 to 55137033 10 + TSS region transcription start site region 101610
Slc36a3os 11 55137044 to 55140193 3149 + antisense lncRNA gene solute carrier family 36 (proton/amino acid symporter), member 3, opposite strand
Tssr108045 11 55147188 to 55147210 22 - TSS region transcription start site region 108045
Gm31688 11 55149964 to 55158365 8401 + lncRNA gene predicted gene, 31688
Tssr108046 11 55151679 to 55151691 12 - TSS region transcription start site region 108046
Tssr108047 11 55151698 to 55151699 1 - TSS region transcription start site region 108047
Tssr108048 11 55151703 to 55151712 9 - TSS region transcription start site region 108048
Slc36a2 11 55158470 to 55185077 26607 - protein coding gene solute carrier family 36 (proton/amino acid symporter), member 2
Tssr108049 11 55185029 to 55185082 53 - TSS region transcription start site region 108049
Slc36a1os 11 55191719 to 55197682 5963 - antisense lncRNA gene solute carrier family 36 (proton/amino acid symporter), member 1, opposite strand
Cpgi2898 11 55204157 to 55204986 829 CpG island CpG island 2898
Tssr101611 11 55204319 to 55204386 67 + TSS region transcription start site region 101611
Slc36a1 11 55204350 to 55236330 31980 + protein coding gene solute carrier family 36 (proton/amino acid symporter), member 1
Tssr101612 11 55204396 to 55204412 16 + TSS region transcription start site region 101612
Tssr101613 11 55213783 to 55213814 31 + TSS region transcription start site region 101613
Tssr101614 11 55217709 to 55217732 23 + TSS region transcription start site region 101614
Fat2 11 55250609 to 55336564 85955 - protein coding gene FAT atypical cadherin 2
Cpgi2899 11 55262417 to 55262808 391 CpG island CpG island 2899
Tssr108050 11 55310089 to 55310100 11 - TSS region transcription start site region 108050
Tssr108051 11 55310704 to 55310712 8 - TSS region transcription start site region 108051
Tssr108052 11 55311055 to 55311090 35 - TSS region transcription start site region 108052
Tssr108053 11 55312143 to 55312191 48 - TSS region transcription start site region 108053
Tssr108054 11 55314568 to 55314596 28 - TSS region transcription start site region 108054
Tssr108055 11 55336480 to 55336520 40 - TSS region transcription start site region 108055
Tssr108056 11 55336544 to 55336553 9 - TSS region transcription start site region 108056
Tssr108057 11 55336561 to 55336590 29 - TSS region transcription start site region 108057
Tssr108058 11 55336597 to 55336631 34 - TSS region transcription start site region 108058
Tssr108059 11 55336650 to 55336657 7 - TSS region transcription start site region 108059
Tssr108060 11 55337784 to 55337793 9 - TSS region transcription start site region 108060
Gm31842 11 55378329 to 55384302 5973 - lncRNA gene predicted gene, 31842
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
Sparc 11 55394159 to 55420080 25921 - protein coding gene secreted acidic cysteine rich glycoprotein
Tssr108061 11 55394562 to 55394599 37 - TSS region transcription start site region 108061
Tssr108062 11 55394661 to 55394725 64 - TSS region transcription start site region 108062
Tssr108063 11 55394726 to 55394738 12 - TSS region transcription start site region 108063
Tssr108064 11 55394745 to 55394756 11 - TSS region transcription start site region 108064
Tssr108065 11 55394848 to 55394964 116 - TSS region transcription start site region 108065
Tssr101615 11 55394977 to 55395009 32 + TSS region transcription start site region 101615
Tssr108066 11 55395135 to 55395188 53 - TSS region transcription start site region 108066
Tssr108067 11 55395348 to 55395419 71 - TSS region transcription start site region 108067
Tssr101616 11 55395430 to 55395444 14 + TSS region transcription start site region 101616
Tssr108068 11 55395452 to 55395486 34 - TSS region transcription start site region 108068
Tssr108069 11 55395493 to 55395504 11 - TSS region transcription start site region 108069
Tssr108070 11 55395508 to 55395517 9 - TSS region transcription start site region 108070
Tssr108071 11 55395528 to 55395546 18 - TSS region transcription start site region 108071
Tssr108072 11 55395557 to 55395566 9 - TSS region transcription start site region 108072
Tssr108073 11 55395574 to 55395594 20 - TSS region transcription start site region 108073
Tssr101617 11 55395801 to 55395864 63 + TSS region transcription start site region 101617
Tssr108074 11 55395836 to 55395877 41 - TSS region transcription start site region 108074
Tssr108075 11 55395902 to 55395940 38 - TSS region transcription start site region 108075
Tssr108076 11 55398574 to 55398679 105 - TSS region transcription start site region 108076
Tssr108077 11 55399218 to 55399238 20 - TSS region transcription start site region 108077
Tssr108078 11 55399258 to 55399269 11 - TSS region transcription start site region 108078
Tssr108079 11 55399310 to 55399336 26 - TSS region transcription start site region 108079
Tssr101618 11 55401945 to 55401956 11 + TSS region transcription start site region 101618
Tssr108080 11 55401974 to 55402003 29 - TSS region transcription start site region 108080
Tssr108081 11 55404508 to 55404533 25 - TSS region transcription start site region 108081
Tssr108082 11 55405211 to 55405283 72 - TSS region transcription start site region 108082
Tssr101619 11 55405238 to 55405265 27 + TSS region transcription start site region 101619
Tssr108083 11 55405297 to 55405312 15 - TSS region transcription start site region 108083
Tssr101620 11 55406546 to 55406558 12 + TSS region transcription start site region 101620
Tssr108084 11 55406578 to 55406608 30 - TSS region transcription start site region 108084
Tssr108085 11 55409960 to 55410008 48 - TSS region transcription start site region 108085
Tssr108086 11 55410009 to 55410022 13 - TSS region transcription start site region 108086
Tssr108087 11 55410207 to 55410212 5 - TSS region transcription start site region 108087
Tssr101621 11 55417224 to 55417232 8 + TSS region transcription start site region 101621
Tssr108088 11 55419843 to 55419855 12 - TSS region transcription start site region 108088
Tssr108089 11 55419859 to 55419874 15 - TSS region transcription start site region 108089
Tssr108090 11 55419904 to 55419915 11 - TSS region transcription start site region 108090
D11Mit312 11 55422875 to 55422995 120 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 312
Atox1 11 55446643 to 55461138 14495 - protein coding gene antioxidant 1 copper chaperone
Cpgi2900 11 55460758 to 55461439 681 CpG island CpG island 2900
Tssr108091 11 55461131 to 55461156 25 - TSS region transcription start site region 108091
Tssr108092 11 55461166 to 55461177 11 - TSS region transcription start site region 108092
Tssr108093 11 55461179 to 55461190 11 - TSS region transcription start site region 108093
Gm12235 11 55463840 to 55464009 169 - pseudogene predicted gene 12235
Cpgi2901 11 55468841 to 55470446 1605 CpG island CpG island 2901
Tssr108094 11 55469145 to 55469185 40 - TSS region transcription start site region 108094
Tssr101622 11 55469648 to 55469659 11 + TSS region transcription start site region 101622
Tssr101623 11 55469677 to 55469716 39 + TSS region transcription start site region 101623
Tssr101624 11 55469724 to 55469742 18 + TSS region transcription start site region 101624
G3bp1 11 55469752 to 55500888 31136 + protein coding gene GTPase activating protein (SH3 domain) binding protein 1
Tssr101625 11 55470165 to 55470181 16 + TSS region transcription start site region 101625
Gm22884 11 55482694 to 55482833 139 + snoRNA gene predicted gene, 22884
Gm12238 11 55482706 to 55482829 123 + sense intronic lncRNA gene predicted gene 12238
Tssr101626 11 55496567 to 55496574 7 + TSS region transcription start site region 101626
Mir7652 11 55501226 to 55501281 55 + miRNA gene microRNA 7652
Glra1 11 55514239 to 55608198 93959 - protein coding gene glycine receptor, alpha 1 subunit
Gm12236 11 55514846 to 55527715 12869 + antisense lncRNA gene predicted gene 12236
Gm12237 11 55554940 to 55555409 469 + pseudogene predicted gene 12237
Cpgi2902 11 55607765 to 55608445 680 CpG island CpG island 2902
Tssr108095 11 55607819 to 55607822 3 - TSS region transcription start site region 108095
Tssr108096 11 55607900 to 55607912 12 - TSS region transcription start site region 108096
Tssr108097 11 55607917 to 55608004 87 - TSS region transcription start site region 108097
Tssr108098 11 55608189 to 55608204 15 - TSS region transcription start site region 108098
Tssr108099 11 55608210 to 55608217 7 - TSS region transcription start site region 108099
Tssr108100 11 55608281 to 55608295 14 - TSS region transcription start site region 108100
Tssr108101 11 55608547 to 55608559 12 - TSS region transcription start site region 108101
Tssr108102 11 55608563 to 55608596 33 - TSS region transcription start site region 108102
Tssr108103 11 55608597 to 55608613 16 - TSS region transcription start site region 108103
Tssr108104 11 55608622 to 55608627 5 - TSS region transcription start site region 108104
Tssr108105 11 55608629 to 55608663 34 - TSS region transcription start site region 108105
Tssr108106 11 55659130 to 55659133 3 - TSS region transcription start site region 108106
Tssr3504 11 55678210 to 55678211 1 + TSS region transcription start site region 3504
Gm45963 11 55781368 to 55963249 181881 + lncRNA gene predicted gene, 45963
D11Mit349 11 55789348 to 55789465 117 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 349
D11Mit272 11 55828082 to 55828203 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 272
D11Dcr12 11 55889987 to 55890090 103 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 12
Gm12239 11 55970355 to 56098599 128244 + antisense lncRNA gene predicted gene 12239