Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:54877694-56087833

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241 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr101543 11 54891507 to 54891516 9 + TSS region transcription start site region 101543
Tssr101544 11 54902118 to 54902126 8 + TSS region transcription start site region 101544
Tssr101545 11 54902743 to 54902769 26 + TSS region transcription start site region 101545
Tssr101546 11 54902847 to 54902858 11 + TSS region transcription start site region 101546
Del(11Sparc-Gpx3)91Anjm 11 54902854 to 55420080 517226 cytogenetic marker deletion, Chr 11, Andrew N J McKenzie
Gpx3 11 54902854 to 54910382 7528 + protein coding gene glutathione peroxidase 3
Cpgi2893 11 54902864 to 54903175 311 CpG island CpG island 2893
Tssr101547 11 54902888 to 54902894 6 + TSS region transcription start site region 101547
Tssr101548 11 54902899 to 54902905 6 + TSS region transcription start site region 101548
Tssr101549 11 54902917 to 54902932 15 + TSS region transcription start site region 101549
Tssr101550 11 54904001 to 54904006 5 + TSS region transcription start site region 101550
Tssr101551 11 54906257 to 54906265 8 + TSS region transcription start site region 101551
Tssr101552 11 54906287 to 54906328 41 + TSS region transcription start site region 101552
Tssr101553 11 54906776 to 54906781 5 + TSS region transcription start site region 101553
Tssr101554 11 54906783 to 54906793 10 + TSS region transcription start site region 101554
Tssr101555 11 54906827 to 54906835 8 + TSS region transcription start site region 101555
Tssr101556 11 54907118 to 54907130 12 + TSS region transcription start site region 101556
Tssr101557 11 54907132 to 54907160 28 + TSS region transcription start site region 101557
Tssr101558 11 54907167 to 54907177 10 + TSS region transcription start site region 101558
Tssr101559 11 54907185 to 54907200 15 + TSS region transcription start site region 101559
Tssr101560 11 54907204 to 54907246 42 + TSS region transcription start site region 101560
Tssr108006 11 54907233 to 54907285 52 - TSS region transcription start site region 108006
Tssr101561 11 54908535 to 54908557 22 + TSS region transcription start site region 101561
Tssr101562 11 54908559 to 54908604 45 + TSS region transcription start site region 101562
Tssr108007 11 54908564 to 54908574 10 - TSS region transcription start site region 108007
Tssr101563 11 54908609 to 54908616 7 + TSS region transcription start site region 101563
Tssr101564 11 54908623 to 54908637 14 + TSS region transcription start site region 101564
Tssr108008 11 54908624 to 54908635 11 - TSS region transcription start site region 108008
Tssr108009 11 54908640 to 54908651 11 - TSS region transcription start site region 108009
Tssr101565 11 54909052 to 54909067 15 + TSS region transcription start site region 101565
Tssr108010 11 54909061 to 54909071 10 - TSS region transcription start site region 108010
Tssr101566 11 54909102 to 54909113 11 + TSS region transcription start site region 101566
Tssr101567 11 54909463 to 54909476 13 + TSS region transcription start site region 101567
Tssr101568 11 54909539 to 54909550 11 + TSS region transcription start site region 101568
Tssr101569 11 54909622 to 54909633 11 + TSS region transcription start site region 101569
Tssr3502 11 54909641 to 54909644 3 - TSS region transcription start site region 3502
Tssr101570 11 54909644 to 54909684 40 + TSS region transcription start site region 101570
Tssr108011 11 54909657 to 54909687 30 - TSS region transcription start site region 108011
Tssr108012 11 54909691 to 54909768 77 - TSS region transcription start site region 108012
Tssr101571 11 54909698 to 54909760 62 + TSS region transcription start site region 101571
Tssr108013 11 54909785 to 54909788 3 - TSS region transcription start site region 108013
Tssr108014 11 54909792 to 54909803 11 - TSS region transcription start site region 108014
Tssr101572 11 54909793 to 54909804 11 + TSS region transcription start site region 101572
Tssr101573 11 54909830 to 54909831 1 + TSS region transcription start site region 101573
Tssr101574 11 54909844 to 54909856 12 + TSS region transcription start site region 101574
Tssr108015 11 54909875 to 54909884 9 - TSS region transcription start site region 108015
Tssr101575 11 54909892 to 54909903 11 + TSS region transcription start site region 101575
Tssr101576 11 54909906 to 54909924 18 + TSS region transcription start site region 101576
Tssr108016 11 54909927 to 54909946 19 - TSS region transcription start site region 108016
Tssr101577 11 54909935 to 54909946 11 + TSS region transcription start site region 101577
Tssr108017 11 54909978 to 54909987 9 - TSS region transcription start site region 108017
Tssr108018 11 54909993 to 54910008 15 - TSS region transcription start site region 108018
Tssr101578 11 54910018 to 54910031 13 + TSS region transcription start site region 101578
Tssr108019 11 54910029 to 54910077 48 - TSS region transcription start site region 108019
Tssr108020 11 54910085 to 54910096 11 - TSS region transcription start site region 108020
Tssr108021 11 54910105 to 54910113 8 - TSS region transcription start site region 108021
Tssr3503 11 54910115 to 54910116 1 + TSS region transcription start site region 3503
Tssr108022 11 54910116 to 54910156 40 - TSS region transcription start site region 108022
Tssr108023 11 54910369 to 54910380 11 - TSS region transcription start site region 108023
Tnip1 11 54910785 to 54962917 52132 - protein coding gene TNFAIP3 interacting protein 1
Tssr108024 11 54916951 to 54916966 15 - TSS region transcription start site region 108024
Tssr108025 11 54917888 to 54917900 12 - TSS region transcription start site region 108025
Tssr108026 11 54918651 to 54918683 32 - TSS region transcription start site region 108026
Gm12230 11 54947435 to 54947888 453 + pseudogene predicted gene 12230
Tssr108027 11 54952422 to 54952428 6 - TSS region transcription start site region 108027
Cpgi2894 11 54955592 to 54956391 799 CpG island CpG island 2894
Tssr101579 11 54955817 to 54955839 22 + TSS region transcription start site region 101579
Tssr108028 11 54956033 to 54956040 7 - TSS region transcription start site region 108028
Tssr108029 11 54956049 to 54956115 66 - TSS region transcription start site region 108029
Tssr101580 11 54956195 to 54956202 7 + TSS region transcription start site region 101580
Tssr101581 11 54956224 to 54956240 16 + TSS region transcription start site region 101581
Tssr101582 11 54958660 to 54958664 4 + TSS region transcription start site region 101582
Tssr101583 11 54960533 to 54960552 19 + TSS region transcription start site region 101583
Tssr101584 11 54960561 to 54960573 12 + TSS region transcription start site region 101584
Tssr101585 11 54961702 to 54961709 7 + TSS region transcription start site region 101585
Tssr101586 11 54961737 to 54961756 19 + TSS region transcription start site region 101586
Tssr108030 11 54962873 to 54962874 1 - TSS region transcription start site region 108030
Tssr108031 11 54962903 to 54962953 50 - TSS region transcription start site region 108031
Tssr108032 11 54971952 to 54971954 2 - TSS region transcription start site region 108032
Tssr108033 11 54973771 to 54973801 30 - TSS region transcription start site region 108033
Anxa6 11 54979108 to 55033445 54337 - protein coding gene annexin A6
Tssr108034 11 54982744 to 54982749 5 - TSS region transcription start site region 108034
Tssr108035 11 54985164 to 54985178 14 - TSS region transcription start site region 108035
Gm19911 11 55019932 to 55028866 8934 + lncRNA gene predicted gene, 19911
Tssr108036 11 55021815 to 55021863 48 - TSS region transcription start site region 108036
Cpgi2895 11 55033113 to 55033608 495 CpG island CpG island 2895
Tssr108037 11 55033398 to 55033461 63 - TSS region transcription start site region 108037
Ccdc69 11 55049731 to 55078131 28400 - protein coding gene coiled-coil domain containing 69
Cpgi2896 11 55077509 to 55078381 872 CpG island CpG island 2896
Tssr108038 11 55078075 to 55078119 44 - TSS region transcription start site region 108038
Tssr108039 11 55078120 to 55078145 25 - TSS region transcription start site region 108039
Cpgi2897 11 55097458 to 55098609 1151 CpG island CpG island 2897
Tssr101587 11 55097968 to 55097979 11 + TSS region transcription start site region 101587
Tssr101588 11 55098042 to 55098102 60 + TSS region transcription start site region 101588
Tssr101589 11 55098104 to 55098129 25 + TSS region transcription start site region 101589
Gm2a 11 55098115 to 55113029 14914 + protein coding gene GM2 ganglioside activator protein
Tssr101590 11 55098132 to 55098150 18 + TSS region transcription start site region 101590
Tssr101591 11 55103544 to 55103562 18 + TSS region transcription start site region 101591
Tssr101592 11 55103708 to 55103724 16 + TSS region transcription start site region 101592
Tssr101593 11 55109013 to 55109056 43 + TSS region transcription start site region 101593
Tssr101594 11 55109372 to 55109383 11 + TSS region transcription start site region 101594
Tssr108040 11 55109417 to 55109445 28 - TSS region transcription start site region 108040
Tssr101595 11 55109613 to 55109622 9 + TSS region transcription start site region 101595
Tssr101596 11 55109640 to 55109642 2 + TSS region transcription start site region 101596
Tssr108041 11 55109666 to 55109691 25 - TSS region transcription start site region 108041
Tssr101597 11 55109705 to 55109716 11 + TSS region transcription start site region 101597
Tssr108042 11 55109724 to 55109751 27 - TSS region transcription start site region 108042
Tssr101598 11 55109807 to 55109826 19 + TSS region transcription start site region 101598
Tssr101599 11 55109835 to 55109846 11 + TSS region transcription start site region 101599
Tssr101600 11 55110090 to 55110097 7 + TSS region transcription start site region 101600
Tssr101601 11 55110167 to 55110172 5 + TSS region transcription start site region 101601
Tssr101602 11 55110212 to 55110217 5 + TSS region transcription start site region 101602
Tssr101603 11 55110302 to 55110329 27 + TSS region transcription start site region 101603
Tssr101604 11 55110337 to 55110356 19 + TSS region transcription start site region 101604
Tssr101605 11 55110397 to 55110417 20 + TSS region transcription start site region 101605
Gm12231 11 55118101 to 55118795 694 - pseudogene predicted gene 12231
Tssr108043 11 55118850 to 55118888 38 - TSS region transcription start site region 108043
D11Dcr11 11 55120012 to 55120110 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 11
Mup-ps22 11 55123695 to 55123937 242 + pseudogene major urinary protein, pseudogene 22
Tssr101606 11 55123799 to 55123810 11 + TSS region transcription start site region 101606
Tssr101607 11 55123926 to 55123949 23 + TSS region transcription start site region 101607
Tssr108044 11 55123963 to 55123981 18 - TSS region transcription start site region 108044
Slc36a3 11 55124815 to 55151708 26893 - protein coding gene solute carrier family 36 (proton/amino acid symporter), member 3
Nwa3 11 55125289 to 55125383 94 QTL New Zealand White autoimmunity 3
D11Mit207 11 55125289 to 55125383 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 207
Tssr101608 11 55131656 to 55131704 48 + TSS region transcription start site region 101608
Tssr101609 11 55136991 to 55137019 28 + TSS region transcription start site region 101609
Tssr101610 11 55137023 to 55137033 10 + TSS region transcription start site region 101610
Slc36a3os 11 55137044 to 55140193 3149 + antisense lncRNA gene solute carrier family 36 (proton/amino acid symporter), member 3, opposite strand
Tssr108045 11 55147188 to 55147210 22 - TSS region transcription start site region 108045
Gm31688 11 55149964 to 55158365 8401 + lncRNA gene predicted gene, 31688
Tssr108046 11 55151679 to 55151691 12 - TSS region transcription start site region 108046
Tssr108047 11 55151698 to 55151699 1 - TSS region transcription start site region 108047
Tssr108048 11 55151703 to 55151712 9 - TSS region transcription start site region 108048
Slc36a2 11 55158470 to 55185077 26607 - protein coding gene solute carrier family 36 (proton/amino acid symporter), member 2
Tssr108049 11 55185029 to 55185082 53 - TSS region transcription start site region 108049
Slc36a1os 11 55191719 to 55197682 5963 - antisense lncRNA gene solute carrier family 36 (proton/amino acid symporter), member 1, opposite strand
Cpgi2898 11 55204157 to 55204986 829 CpG island CpG island 2898
Tssr101611 11 55204319 to 55204386 67 + TSS region transcription start site region 101611
Slc36a1 11 55204350 to 55236330 31980 + protein coding gene solute carrier family 36 (proton/amino acid symporter), member 1
Tssr101612 11 55204396 to 55204412 16 + TSS region transcription start site region 101612
Tssr101613 11 55213783 to 55213814 31 + TSS region transcription start site region 101613
Tssr101614 11 55217709 to 55217732 23 + TSS region transcription start site region 101614
Fat2 11 55250609 to 55336564 85955 - protein coding gene FAT atypical cadherin 2
Cpgi2899 11 55262417 to 55262808 391 CpG island CpG island 2899
Tssr108050 11 55310089 to 55310100 11 - TSS region transcription start site region 108050
Tssr108051 11 55310704 to 55310712 8 - TSS region transcription start site region 108051
Tssr108052 11 55311055 to 55311090 35 - TSS region transcription start site region 108052
Tssr108053 11 55312143 to 55312191 48 - TSS region transcription start site region 108053
Tssr108054 11 55314568 to 55314596 28 - TSS region transcription start site region 108054
Tssr108055 11 55336480 to 55336520 40 - TSS region transcription start site region 108055
Tssr108056 11 55336544 to 55336553 9 - TSS region transcription start site region 108056
Tssr108057 11 55336561 to 55336590 29 - TSS region transcription start site region 108057
Tssr108058 11 55336597 to 55336631 34 - TSS region transcription start site region 108058
Tssr108059 11 55336650 to 55336657 7 - TSS region transcription start site region 108059
Tssr108060 11 55337784 to 55337793 9 - TSS region transcription start site region 108060
Gm31842 11 55378329 to 55384302 5973 - lncRNA gene predicted gene, 31842
Sparc 11 55394159 to 55420080 25921 - protein coding gene secreted acidic cysteine rich glycoprotein
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
Tssr108061 11 55394562 to 55394599 37 - TSS region transcription start site region 108061
Tssr108062 11 55394661 to 55394725 64 - TSS region transcription start site region 108062
Tssr108063 11 55394726 to 55394738 12 - TSS region transcription start site region 108063
Tssr108064 11 55394745 to 55394756 11 - TSS region transcription start site region 108064
Tssr108065 11 55394848 to 55394964 116 - TSS region transcription start site region 108065
Tssr101615 11 55394977 to 55395009 32 + TSS region transcription start site region 101615
Tssr108066 11 55395135 to 55395188 53 - TSS region transcription start site region 108066
Tssr108067 11 55395348 to 55395419 71 - TSS region transcription start site region 108067
Tssr101616 11 55395430 to 55395444 14 + TSS region transcription start site region 101616
Tssr108068 11 55395452 to 55395486 34 - TSS region transcription start site region 108068
Tssr108069 11 55395493 to 55395504 11 - TSS region transcription start site region 108069
Tssr108070 11 55395508 to 55395517 9 - TSS region transcription start site region 108070
Tssr108071 11 55395528 to 55395546 18 - TSS region transcription start site region 108071
Tssr108072 11 55395557 to 55395566 9 - TSS region transcription start site region 108072
Tssr108073 11 55395574 to 55395594 20 - TSS region transcription start site region 108073
Tssr101617 11 55395801 to 55395864 63 + TSS region transcription start site region 101617
Tssr108074 11 55395836 to 55395877 41 - TSS region transcription start site region 108074
Tssr108075 11 55395902 to 55395940 38 - TSS region transcription start site region 108075
Tssr108076 11 55398574 to 55398679 105 - TSS region transcription start site region 108076
Tssr108077 11 55399218 to 55399238 20 - TSS region transcription start site region 108077
Tssr108078 11 55399258 to 55399269 11 - TSS region transcription start site region 108078
Tssr108079 11 55399310 to 55399336 26 - TSS region transcription start site region 108079
Tssr101618 11 55401945 to 55401956 11 + TSS region transcription start site region 101618
Tssr108080 11 55401974 to 55402003 29 - TSS region transcription start site region 108080
Tssr108081 11 55404508 to 55404533 25 - TSS region transcription start site region 108081
Tssr108082 11 55405211 to 55405283 72 - TSS region transcription start site region 108082
Tssr101619 11 55405238 to 55405265 27 + TSS region transcription start site region 101619
Tssr108083 11 55405297 to 55405312 15 - TSS region transcription start site region 108083
Tssr101620 11 55406546 to 55406558 12 + TSS region transcription start site region 101620
Tssr108084 11 55406578 to 55406608 30 - TSS region transcription start site region 108084
Tssr108085 11 55409960 to 55410008 48 - TSS region transcription start site region 108085
Tssr108086 11 55410009 to 55410022 13 - TSS region transcription start site region 108086
Tssr108087 11 55410207 to 55410212 5 - TSS region transcription start site region 108087
Tssr101621 11 55417224 to 55417232 8 + TSS region transcription start site region 101621
Tssr108088 11 55419843 to 55419855 12 - TSS region transcription start site region 108088
Tssr108089 11 55419859 to 55419874 15 - TSS region transcription start site region 108089
Tssr108090 11 55419904 to 55419915 11 - TSS region transcription start site region 108090
D11Mit312 11 55422875 to 55422995 120 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 312
Atox1 11 55446643 to 55461138 14495 - protein coding gene antioxidant 1 copper chaperone
Cpgi2900 11 55460758 to 55461439 681 CpG island CpG island 2900
Tssr108091 11 55461131 to 55461156 25 - TSS region transcription start site region 108091