Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:54706944-54907355

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdc42se2 11 54717456 to 54787675 70219 - protein coding gene CDC42 small effector 2
Tssr107994 11 54726798 to 54726844 46 - TSS region transcription start site region 107994
Tssr107995 11 54727496 to 54727521 25 - TSS region transcription start site region 107995
Gm12227 11 54728677 to 54734323 5646 + antisense lncRNA gene predicted gene 12227
Gm12229 11 54746357 to 54746824 467 - pseudogene predicted gene 12229
Tssr107996 11 54764154 to 54764174 20 - TSS region transcription start site region 107996
Tssr107997 11 54764181 to 54764207 26 - TSS region transcription start site region 107997
D11Dcr10 11 54777830 to 54777925 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 10
Tssr107998 11 54778907 to 54778911 4 - TSS region transcription start site region 107998
Tssr107999 11 54780071 to 54780076 5 - TSS region transcription start site region 107999
Cpgi2889 11 54786841 to 54788085 1244 CpG island CpG island 2889
Tssr108000 11 54787597 to 54787711 114 - TSS region transcription start site region 108000
Tssr108001 11 54787717 to 54787720 3 - TSS region transcription start site region 108001
2010313P22Rik 11 54802910 to 54814774 11864 unclassified gene RIKEN cDNA 2010313P22 gene
Cpgi2890 11 54806944 to 54807355 411 CpG island CpG island 2890
Lyrm7os 11 54819919 to 54824967 5048 + antisense lncRNA gene LYR motif containing 7, opposite strand
Lyrm7 11 54826866 to 54860916 34050 - protein coding gene LYR motif containing 7
Gm25426 11 54829711 to 54829880 169 + snRNA gene predicted gene, 25426
Tssr108002 11 54845538 to 54845544 6 - TSS region transcription start site region 108002
Gm18818 11 54845786 to 54846433 647 + pseudogene predicted gene, 18818
Tssr101538 11 54848359 to 54848364 5 + TSS region transcription start site region 101538
Tssr108003 11 54850489 to 54850524 35 - TSS region transcription start site region 108003
Tssr108004 11 54850525 to 54850536 11 - TSS region transcription start site region 108004
Gm31490 11 54859095 to 54862859 3764 + lncRNA gene predicted gene, 31490
Cpgi2891 11 54860487 to 54860967 480 CpG island CpG island 2891
Tssr108005 11 54860564 to 54860603 39 - TSS region transcription start site region 108005
Tssr3501 11 54860767 to 54860778 11 + TSS region transcription start site region 3501
Tssr101539 11 54860790 to 54860836 46 + TSS region transcription start site region 101539
Tssr101540 11 54861015 to 54861026 11 + TSS region transcription start site region 101540
Cpgi2892 11 54866166 to 54867211 1045 CpG island CpG island 2892
Tssr101541 11 54866374 to 54866392 18 + TSS region transcription start site region 101541
Tssr101542 11 54866413 to 54866459 46 + TSS region transcription start site region 101542
Hint1 11 54866438 to 54870496 4058 + protein coding gene histidine triad nucleotide binding protein 1
Tssr101543 11 54891507 to 54891516 9 + TSS region transcription start site region 101543
Tssr101544 11 54902118 to 54902126 8 + TSS region transcription start site region 101544
Tssr101545 11 54902743 to 54902769 26 + TSS region transcription start site region 101545
Tssr101546 11 54902847 to 54902858 11 + TSS region transcription start site region 101546
Del(11Sparc-Gpx3)91Anjm 11 54902854 to 55420080 517226 cytogenetic marker deletion, Chr 11, Andrew N J McKenzie
Gpx3 11 54902854 to 54910382 7528 + protein coding gene glutathione peroxidase 3
Cpgi2893 11 54902864 to 54903175 311 CpG island CpG island 2893
Tssr101547 11 54902888 to 54902894 6 + TSS region transcription start site region 101547
Tssr101548 11 54902899 to 54902905 6 + TSS region transcription start site region 101548
Tssr101549 11 54902917 to 54902932 15 + TSS region transcription start site region 101549
Tssr101550 11 54904001 to 54904006 5 + TSS region transcription start site region 101550
Tssr101551 11 54906257 to 54906265 8 + TSS region transcription start site region 101551
Tssr101552 11 54906287 to 54906328 41 + TSS region transcription start site region 101552
Tssr101553 11 54906776 to 54906781 5 + TSS region transcription start site region 101553
Tssr101554 11 54906783 to 54906793 10 + TSS region transcription start site region 101554
Tssr101555 11 54906827 to 54906835 8 + TSS region transcription start site region 101555
Tssr101556 11 54907118 to 54907130 12 + TSS region transcription start site region 101556
Tssr101557 11 54907132 to 54907160 28 + TSS region transcription start site region 101557
Tssr101558 11 54907167 to 54907177 10 + TSS region transcription start site region 101558
Tssr101559 11 54907185 to 54907200 15 + TSS region transcription start site region 101559
Tssr101560 11 54907204 to 54907246 42 + TSS region transcription start site region 101560
Tssr108006 11 54907233 to 54907285 52 - TSS region transcription start site region 108006