Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:54694815-55581708

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252 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rapgef6 11 54522847 to 54699285 176438 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 6
Tssr101537 11 54702086 to 54702090 4 + TSS region transcription start site region 101537
Cdc42se2 11 54717456 to 54787675 70219 - protein coding gene CDC42 small effector 2
Tssr107994 11 54726798 to 54726844 46 - TSS region transcription start site region 107994
Tssr107995 11 54727496 to 54727521 25 - TSS region transcription start site region 107995
Gm12227 11 54728677 to 54734323 5646 + antisense lncRNA gene predicted gene 12227
Gm12229 11 54746357 to 54746824 467 - pseudogene predicted gene 12229
Tssr107996 11 54764154 to 54764174 20 - TSS region transcription start site region 107996
Tssr107997 11 54764181 to 54764207 26 - TSS region transcription start site region 107997
D11Dcr10 11 54777830 to 54777925 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 10
Tssr107998 11 54778907 to 54778911 4 - TSS region transcription start site region 107998
Tssr107999 11 54780071 to 54780076 5 - TSS region transcription start site region 107999
Cpgi2889 11 54786841 to 54788085 1244 CpG island CpG island 2889
Tssr108000 11 54787597 to 54787711 114 - TSS region transcription start site region 108000
Tssr108001 11 54787717 to 54787720 3 - TSS region transcription start site region 108001
2010313P22Rik 11 54802910 to 54814774 11864 unclassified gene RIKEN cDNA 2010313P22 gene
Cpgi2890 11 54806944 to 54807355 411 CpG island CpG island 2890
Lyrm7os 11 54819919 to 54824967 5048 + antisense lncRNA gene LYR motif containing 7, opposite strand
Lyrm7 11 54826866 to 54860916 34050 - protein coding gene LYR motif containing 7
Gm25426 11 54829711 to 54829880 169 + snRNA gene predicted gene, 25426
Tssr108002 11 54845538 to 54845544 6 - TSS region transcription start site region 108002
Gm18818 11 54845786 to 54846433 647 + pseudogene predicted gene, 18818
Tssr101538 11 54848359 to 54848364 5 + TSS region transcription start site region 101538
Tssr108003 11 54850489 to 54850524 35 - TSS region transcription start site region 108003
Tssr108004 11 54850525 to 54850536 11 - TSS region transcription start site region 108004
Gm31490 11 54859095 to 54862859 3764 + lncRNA gene predicted gene, 31490
Cpgi2891 11 54860487 to 54860967 480 CpG island CpG island 2891
Tssr108005 11 54860564 to 54860603 39 - TSS region transcription start site region 108005
Tssr3501 11 54860767 to 54860778 11 + TSS region transcription start site region 3501
Tssr101539 11 54860790 to 54860836 46 + TSS region transcription start site region 101539
Tssr101540 11 54861015 to 54861026 11 + TSS region transcription start site region 101540
Cpgi2892 11 54866166 to 54867211 1045 CpG island CpG island 2892
Tssr101541 11 54866374 to 54866392 18 + TSS region transcription start site region 101541
Tssr101542 11 54866413 to 54866459 46 + TSS region transcription start site region 101542
Hint1 11 54866438 to 54870496 4058 + protein coding gene histidine triad nucleotide binding protein 1
Tssr101543 11 54891507 to 54891516 9 + TSS region transcription start site region 101543
Tssr101544 11 54902118 to 54902126 8 + TSS region transcription start site region 101544
Tssr101545 11 54902743 to 54902769 26 + TSS region transcription start site region 101545
Tssr101546 11 54902847 to 54902858 11 + TSS region transcription start site region 101546
Gpx3 11 54902854 to 54910382 7528 + protein coding gene glutathione peroxidase 3
Del(11Sparc-Gpx3)91Anjm 11 54902854 to 55420080 517226 cytogenetic marker deletion, Chr 11, Andrew N J McKenzie
Cpgi2893 11 54902864 to 54903175 311 CpG island CpG island 2893
Tssr101547 11 54902888 to 54902894 6 + TSS region transcription start site region 101547
Tssr101548 11 54902899 to 54902905 6 + TSS region transcription start site region 101548
Tssr101549 11 54902917 to 54902932 15 + TSS region transcription start site region 101549
Tssr101550 11 54904001 to 54904006 5 + TSS region transcription start site region 101550
Tssr101551 11 54906257 to 54906265 8 + TSS region transcription start site region 101551
Tssr101552 11 54906287 to 54906328 41 + TSS region transcription start site region 101552
Tssr101553 11 54906776 to 54906781 5 + TSS region transcription start site region 101553
Tssr101554 11 54906783 to 54906793 10 + TSS region transcription start site region 101554
Tssr101555 11 54906827 to 54906835 8 + TSS region transcription start site region 101555
Tssr101556 11 54907118 to 54907130 12 + TSS region transcription start site region 101556
Tssr101557 11 54907132 to 54907160 28 + TSS region transcription start site region 101557
Tssr101558 11 54907167 to 54907177 10 + TSS region transcription start site region 101558
Tssr101559 11 54907185 to 54907200 15 + TSS region transcription start site region 101559
Tssr101560 11 54907204 to 54907246 42 + TSS region transcription start site region 101560
Tssr108006 11 54907233 to 54907285 52 - TSS region transcription start site region 108006
Tssr101561 11 54908535 to 54908557 22 + TSS region transcription start site region 101561
Tssr101562 11 54908559 to 54908604 45 + TSS region transcription start site region 101562
Tssr108007 11 54908564 to 54908574 10 - TSS region transcription start site region 108007
Tssr101563 11 54908609 to 54908616 7 + TSS region transcription start site region 101563
Tssr101564 11 54908623 to 54908637 14 + TSS region transcription start site region 101564
Tssr108008 11 54908624 to 54908635 11 - TSS region transcription start site region 108008
Tssr108009 11 54908640 to 54908651 11 - TSS region transcription start site region 108009
Tssr101565 11 54909052 to 54909067 15 + TSS region transcription start site region 101565
Tssr108010 11 54909061 to 54909071 10 - TSS region transcription start site region 108010
Tssr101566 11 54909102 to 54909113 11 + TSS region transcription start site region 101566
Tssr101567 11 54909463 to 54909476 13 + TSS region transcription start site region 101567
Tssr101568 11 54909539 to 54909550 11 + TSS region transcription start site region 101568
Tssr101569 11 54909622 to 54909633 11 + TSS region transcription start site region 101569
Tssr3502 11 54909641 to 54909644 3 - TSS region transcription start site region 3502
Tssr101570 11 54909644 to 54909684 40 + TSS region transcription start site region 101570
Tssr108011 11 54909657 to 54909687 30 - TSS region transcription start site region 108011
Tssr108012 11 54909691 to 54909768 77 - TSS region transcription start site region 108012
Tssr101571 11 54909698 to 54909760 62 + TSS region transcription start site region 101571
Tssr108013 11 54909785 to 54909788 3 - TSS region transcription start site region 108013
Tssr108014 11 54909792 to 54909803 11 - TSS region transcription start site region 108014
Tssr101572 11 54909793 to 54909804 11 + TSS region transcription start site region 101572
Tssr101573 11 54909830 to 54909831 1 + TSS region transcription start site region 101573
Tssr101574 11 54909844 to 54909856 12 + TSS region transcription start site region 101574
Tssr108015 11 54909875 to 54909884 9 - TSS region transcription start site region 108015
Tssr101575 11 54909892 to 54909903 11 + TSS region transcription start site region 101575
Tssr101576 11 54909906 to 54909924 18 + TSS region transcription start site region 101576
Tssr108016 11 54909927 to 54909946 19 - TSS region transcription start site region 108016
Tssr101577 11 54909935 to 54909946 11 + TSS region transcription start site region 101577
Tssr108017 11 54909978 to 54909987 9 - TSS region transcription start site region 108017
Tssr108018 11 54909993 to 54910008 15 - TSS region transcription start site region 108018
Tssr101578 11 54910018 to 54910031 13 + TSS region transcription start site region 101578
Tssr108019 11 54910029 to 54910077 48 - TSS region transcription start site region 108019
Tssr108020 11 54910085 to 54910096 11 - TSS region transcription start site region 108020
Tssr108021 11 54910105 to 54910113 8 - TSS region transcription start site region 108021
Tssr3503 11 54910115 to 54910116 1 + TSS region transcription start site region 3503
Tssr108022 11 54910116 to 54910156 40 - TSS region transcription start site region 108022
Tssr108023 11 54910369 to 54910380 11 - TSS region transcription start site region 108023
Tnip1 11 54910785 to 54962917 52132 - protein coding gene TNFAIP3 interacting protein 1
Tssr108024 11 54916951 to 54916966 15 - TSS region transcription start site region 108024
Tssr108025 11 54917888 to 54917900 12 - TSS region transcription start site region 108025
Tssr108026 11 54918651 to 54918683 32 - TSS region transcription start site region 108026
Gm12230 11 54947435 to 54947888 453 + pseudogene predicted gene 12230
Tssr108027 11 54952422 to 54952428 6 - TSS region transcription start site region 108027
Cpgi2894 11 54955592 to 54956391 799 CpG island CpG island 2894
Tssr101579 11 54955817 to 54955839 22 + TSS region transcription start site region 101579
Tssr108028 11 54956033 to 54956040 7 - TSS region transcription start site region 108028
Tssr108029 11 54956049 to 54956115 66 - TSS region transcription start site region 108029
Tssr101580 11 54956195 to 54956202 7 + TSS region transcription start site region 101580
Tssr101581 11 54956224 to 54956240 16 + TSS region transcription start site region 101581
Tssr101582 11 54958660 to 54958664 4 + TSS region transcription start site region 101582
Tssr101583 11 54960533 to 54960552 19 + TSS region transcription start site region 101583
Tssr101584 11 54960561 to 54960573 12 + TSS region transcription start site region 101584
Tssr101585 11 54961702 to 54961709 7 + TSS region transcription start site region 101585
Tssr101586 11 54961737 to 54961756 19 + TSS region transcription start site region 101586
Tssr108030 11 54962873 to 54962874 1 - TSS region transcription start site region 108030
Tssr108031 11 54962903 to 54962953 50 - TSS region transcription start site region 108031
Tssr108032 11 54971952 to 54971954 2 - TSS region transcription start site region 108032
Tssr108033 11 54973771 to 54973801 30 - TSS region transcription start site region 108033
Anxa6 11 54979108 to 55033445 54337 - protein coding gene annexin A6
Tssr108034 11 54982744 to 54982749 5 - TSS region transcription start site region 108034
Tssr108035 11 54985164 to 54985178 14 - TSS region transcription start site region 108035
Gm19911 11 55019932 to 55028866 8934 + lncRNA gene predicted gene, 19911
Tssr108036 11 55021815 to 55021863 48 - TSS region transcription start site region 108036
Cpgi2895 11 55033113 to 55033608 495 CpG island CpG island 2895
Tssr108037 11 55033398 to 55033461 63 - TSS region transcription start site region 108037
Ccdc69 11 55049731 to 55078131 28400 - protein coding gene coiled-coil domain containing 69
Cpgi2896 11 55077509 to 55078381 872 CpG island CpG island 2896
Tssr108038 11 55078075 to 55078119 44 - TSS region transcription start site region 108038
Tssr108039 11 55078120 to 55078145 25 - TSS region transcription start site region 108039
Cpgi2897 11 55097458 to 55098609 1151 CpG island CpG island 2897
Tssr101587 11 55097968 to 55097979 11 + TSS region transcription start site region 101587
Tssr101588 11 55098042 to 55098102 60 + TSS region transcription start site region 101588
Tssr101589 11 55098104 to 55098129 25 + TSS region transcription start site region 101589
Gm2a 11 55098115 to 55113029 14914 + protein coding gene GM2 ganglioside activator protein
Tssr101590 11 55098132 to 55098150 18 + TSS region transcription start site region 101590
Tssr101591 11 55103544 to 55103562 18 + TSS region transcription start site region 101591
Tssr101592 11 55103708 to 55103724 16 + TSS region transcription start site region 101592
Tssr101593 11 55109013 to 55109056 43 + TSS region transcription start site region 101593
Tssr101594 11 55109372 to 55109383 11 + TSS region transcription start site region 101594
Tssr108040 11 55109417 to 55109445 28 - TSS region transcription start site region 108040
Tssr101595 11 55109613 to 55109622 9 + TSS region transcription start site region 101595
Tssr101596 11 55109640 to 55109642 2 + TSS region transcription start site region 101596
Tssr108041 11 55109666 to 55109691 25 - TSS region transcription start site region 108041
Tssr101597 11 55109705 to 55109716 11 + TSS region transcription start site region 101597
Tssr108042 11 55109724 to 55109751 27 - TSS region transcription start site region 108042
Tssr101598 11 55109807 to 55109826 19 + TSS region transcription start site region 101598
Tssr101599 11 55109835 to 55109846 11 + TSS region transcription start site region 101599
Tssr101600 11 55110090 to 55110097 7 + TSS region transcription start site region 101600
Tssr101601 11 55110167 to 55110172 5 + TSS region transcription start site region 101601
Tssr101602 11 55110212 to 55110217 5 + TSS region transcription start site region 101602
Tssr101603 11 55110302 to 55110329 27 + TSS region transcription start site region 101603
Tssr101604 11 55110337 to 55110356 19 + TSS region transcription start site region 101604
Tssr101605 11 55110397 to 55110417 20 + TSS region transcription start site region 101605
Gm12231 11 55118101 to 55118795 694 - pseudogene predicted gene 12231
Tssr108043 11 55118850 to 55118888 38 - TSS region transcription start site region 108043
D11Dcr11 11 55120012 to 55120110 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 11
Mup-ps22 11 55123695 to 55123937 242 + pseudogene major urinary protein, pseudogene 22
Tssr101606 11 55123799 to 55123810 11 + TSS region transcription start site region 101606
Tssr101607 11 55123926 to 55123949 23 + TSS region transcription start site region 101607
Tssr108044 11 55123963 to 55123981 18 - TSS region transcription start site region 108044
Slc36a3 11 55124815 to 55151708 26893 - protein coding gene solute carrier family 36 (proton/amino acid symporter), member 3
D11Mit207 11 55125289 to 55125383 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 207
Nwa3 11 55125289 to 55125383 94 QTL New Zealand White autoimmunity 3
Tssr101608 11 55131656 to 55131704 48 + TSS region transcription start site region 101608
Tssr101609 11 55136991 to 55137019 28 + TSS region transcription start site region 101609
Tssr101610 11 55137023 to 55137033 10 + TSS region transcription start site region 101610
Slc36a3os 11 55137044 to 55140193 3149 + antisense lncRNA gene solute carrier family 36 (proton/amino acid symporter), member 3, opposite strand
Tssr108045 11 55147188 to 55147210 22 - TSS region transcription start site region 108045
Gm31688 11 55149964 to 55158365 8401 + lncRNA gene predicted gene, 31688
Tssr108046 11 55151679 to 55151691 12 - TSS region transcription start site region 108046
Tssr108047 11 55151698 to 55151699 1 - TSS region transcription start site region 108047
Tssr108048 11 55151703 to 55151712 9 - TSS region transcription start site region 108048
Slc36a2 11 55158470 to 55185077 26607 - protein coding gene solute carrier family 36 (proton/amino acid symporter), member 2
Tssr108049 11 55185029 to 55185082 53 - TSS region transcription start site region 108049
Slc36a1os 11 55191719 to 55197682 5963 - antisense lncRNA gene solute carrier family 36 (proton/amino acid symporter), member 1, opposite strand
Cpgi2898 11 55204157 to 55204986 829 CpG island CpG island 2898
Tssr101611 11 55204319 to 55204386 67 + TSS region transcription start site region 101611
Slc36a1 11 55204350 to 55236330 31980 + protein coding gene solute carrier family 36 (proton/amino acid symporter), member 1
Tssr101612 11 55204396 to 55204412 16 + TSS region transcription start site region 101612
Tssr101613 11 55213783 to 55213814 31 + TSS region transcription start site region 101613
Tssr101614 11 55217709 to 55217732 23 + TSS region transcription start site region 101614
Fat2 11 55250609 to 55336564 85955 - protein coding gene FAT atypical cadherin 2
Cpgi2899 11 55262417 to 55262808 391 CpG island CpG island 2899
Tssr108050 11 55310089 to 55310100 11 - TSS region transcription start site region 108050
Tssr108051 11 55310704 to 55310712 8 - TSS region transcription start site region 108051
Tssr108052 11 55311055 to 55311090 35 - TSS region transcription start site region 108052
Tssr108053 11 55312143 to 55312191 48 - TSS region transcription start site region 108053
Tssr108054 11 55314568 to 55314596 28 - TSS region transcription start site region 108054
Tssr108055 11 55336480 to 55336520 40 - TSS region transcription start site region 108055
Tssr108056 11 55336544 to 55336553 9 - TSS region transcription start site region 108056
Tssr108057 11 55336561 to 55336590 29 - TSS region transcription start site region 108057
Tssr108058 11 55336597 to 55336631 34 - TSS region transcription start site region 108058
Tssr108059 11 55336650 to 55336657 7 - TSS region transcription start site region 108059
Tssr108060 11 55337784 to 55337793 9 - TSS region transcription start site region 108060
Gm31842 11 55378329 to 55384302 5973 - lncRNA gene predicted gene, 31842
Etax9 11 55394159 to 72319101 16924942 QTL ethanol induced ataxia 9
Sparc 11 55394159 to 55420080 25921 - protein coding gene secreted acidic cysteine rich glycoprotein
Tssr108061 11 55394562 to 55394599 37 - TSS region transcription start site region 108061
Tssr108062 11 55394661 to 55394725 64 - TSS region transcription start site region 108062
Tssr108063 11 55394726 to 55394738 12 - TSS region transcription start site region 108063
Tssr108064 11 55394745 to 55394756 11 - TSS region transcription start site region 108064
Tssr108065 11 55394848 to 55394964 116 - TSS region transcription start site region 108065
Tssr101615 11 55394977 to 55395009 32 + TSS region transcription start site region 101615