Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:54309140-54499437

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acsl6 11 54303824 to 54364756 60932 + protein coding gene acyl-CoA synthetase long-chain family member 6
Tssr107986 11 54310137 to 54310143 6 - TSS region transcription start site region 107986
Tssr101485 11 54314928 to 54314957 29 + TSS region transcription start site region 101485
Tssr101486 11 54314960 to 54314999 39 + TSS region transcription start site region 101486
Tssr101487 11 54315029 to 54315038 9 + TSS region transcription start site region 101487
Tssr101488 11 54327026 to 54327033 7 + TSS region transcription start site region 101488
Tssr101489 11 54327044 to 54327053 9 + TSS region transcription start site region 101489
Gm12224 11 54340342 to 54345245 4903 - antisense lncRNA gene predicted gene 12224
Tssr107987 11 54353247 to 54353259 12 - TSS region transcription start site region 107987
Tssr107988 11 54353286 to 54353296 10 - TSS region transcription start site region 107988
Tssr107989 11 54353458 to 54353478 20 - TSS region transcription start site region 107989
Tssr101490 11 54370598 to 54370613 15 + TSS region transcription start site region 101490
Tssr101491 11 54370616 to 54370623 7 + TSS region transcription start site region 101491
Tssr101492 11 54370625 to 54370632 7 + TSS region transcription start site region 101492
Meikin 11 54370652 to 54426790 56138 + protein coding gene meiotic kinetochore factor
Gm17884 11 54375123 to 54376641 1518 + pseudogene predicted gene, 17884
Tssr101493 11 54400952 to 54400976 24 + TSS region transcription start site region 101493
Tssr101494 11 54401013 to 54401036 23 + TSS region transcription start site region 101494
Gm12226 11 54401092 to 54401967 875 + pseudogene predicted pseudogene 12226
Gm12225 11 54404140 to 54404437 297 + pseudogene predicted gene 12225
Tssr101495 11 54437768 to 54437773 5 + TSS region transcription start site region 101495
Cpgi2887 11 54437815 to 54438834 1019 CpG island CpG island 2887
Tssr107990 11 54437932 to 54437948 16 - TSS region transcription start site region 107990
Tssr101496 11 54438159 to 54438187 28 + TSS region transcription start site region 101496
Tssr101497 11 54438188 to 54438220 32 + TSS region transcription start site region 101497
Fnip1 11 54438199 to 54518235 80036 + protein coding gene folliculin interacting protein 1
Tssr101498 11 54438273 to 54438284 11 + TSS region transcription start site region 101498
Tssr101499 11 54438474 to 54438503 29 + TSS region transcription start site region 101499
Tssr101500 11 54446964 to 54446973 9 + TSS region transcription start site region 101500
Tssr101501 11 54450684 to 54450688 4 + TSS region transcription start site region 101501
Tssr101502 11 54455751 to 54455753 2 + TSS region transcription start site region 101502
Gm24198 11 54458162 to 54458269 107 + snRNA gene predicted gene, 24198
Tssr101503 11 54486421 to 54486424 3 + TSS region transcription start site region 101503
Tssr101504 11 54496035 to 54496039 4 + TSS region transcription start site region 101504