Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:54252852-54792861

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12223 11 54247600 to 54254495 6895 + antisense lncRNA gene predicted gene 12223
Tssr101478 11 54261755 to 54261763 8 + TSS region transcription start site region 101478
Il3 11 54265303 to 54267277 1974 - protein coding gene interleukin 3
Tssr107985 11 54267276 to 54267280 4 - TSS region transcription start site region 107985
Tssr101479 11 54270828 to 54270830 2 + TSS region transcription start site region 101479
Cpgi2886 11 54303782 to 54304764 982 CpG island CpG island 2886
Tssr101480 11 54303802 to 54303844 42 + TSS region transcription start site region 101480
Acsl6 11 54303824 to 54364756 60932 + protein coding gene acyl-CoA synthetase long-chain family member 6
Tssr101481 11 54304048 to 54304059 11 + TSS region transcription start site region 101481
Tssr101482 11 54304139 to 54304157 18 + TSS region transcription start site region 101482
Tssr101483 11 54304180 to 54304236 56 + TSS region transcription start site region 101483
Tssr101484 11 54304248 to 54304259 11 + TSS region transcription start site region 101484
Tssr107986 11 54310137 to 54310143 6 - TSS region transcription start site region 107986
Tssr101485 11 54314928 to 54314957 29 + TSS region transcription start site region 101485
Tssr101486 11 54314960 to 54314999 39 + TSS region transcription start site region 101486
Tssr101487 11 54315029 to 54315038 9 + TSS region transcription start site region 101487
Tssr101488 11 54327026 to 54327033 7 + TSS region transcription start site region 101488
Tssr101489 11 54327044 to 54327053 9 + TSS region transcription start site region 101489
Gm12224 11 54340342 to 54345245 4903 - antisense lncRNA gene predicted gene 12224
Tssr107987 11 54353247 to 54353259 12 - TSS region transcription start site region 107987
Tssr107988 11 54353286 to 54353296 10 - TSS region transcription start site region 107988
Tssr107989 11 54353458 to 54353478 20 - TSS region transcription start site region 107989
Tssr101490 11 54370598 to 54370613 15 + TSS region transcription start site region 101490
Tssr101491 11 54370616 to 54370623 7 + TSS region transcription start site region 101491
Tssr101492 11 54370625 to 54370632 7 + TSS region transcription start site region 101492
Meikin 11 54370652 to 54426790 56138 + protein coding gene meiotic kinetochore factor
Gm17884 11 54375123 to 54376641 1518 + pseudogene predicted gene, 17884
Tssr101493 11 54400952 to 54400976 24 + TSS region transcription start site region 101493
Tssr101494 11 54401013 to 54401036 23 + TSS region transcription start site region 101494
Gm12226 11 54401092 to 54401967 875 + pseudogene predicted pseudogene 12226
Gm12225 11 54404140 to 54404437 297 + pseudogene predicted gene 12225
Tssr101495 11 54437768 to 54437773 5 + TSS region transcription start site region 101495
Cpgi2887 11 54437815 to 54438834 1019 CpG island CpG island 2887
Tssr107990 11 54437932 to 54437948 16 - TSS region transcription start site region 107990
Tssr101496 11 54438159 to 54438187 28 + TSS region transcription start site region 101496
Tssr101497 11 54438188 to 54438220 32 + TSS region transcription start site region 101497
Fnip1 11 54438199 to 54518235 80036 + protein coding gene folliculin interacting protein 1
Tssr101498 11 54438273 to 54438284 11 + TSS region transcription start site region 101498
Tssr101499 11 54438474 to 54438503 29 + TSS region transcription start site region 101499
Tssr101500 11 54446964 to 54446973 9 + TSS region transcription start site region 101500
Tssr101501 11 54450684 to 54450688 4 + TSS region transcription start site region 101501
Tssr101502 11 54455751 to 54455753 2 + TSS region transcription start site region 101502
Gm24198 11 54458162 to 54458269 107 + snRNA gene predicted gene, 24198
Tssr101503 11 54486421 to 54486424 3 + TSS region transcription start site region 101503
Tssr101504 11 54496035 to 54496039 4 + TSS region transcription start site region 101504
Tssr101505 11 54507278 to 54507287 9 + TSS region transcription start site region 101505
Tssr101506 11 54516156 to 54516167 11 + TSS region transcription start site region 101506
Tssr101507 11 54516298 to 54516320 22 + TSS region transcription start site region 101507
Tssr101508 11 54516715 to 54516728 13 + TSS region transcription start site region 101508
Tssr101509 11 54516777 to 54516789 12 + TSS region transcription start site region 101509
Tssr101510 11 54516799 to 54516802 3 + TSS region transcription start site region 101510
Cpgi2888 11 54522415 to 54523471 1056 CpG island CpG island 2888
Tssr107991 11 54522647 to 54522660 13 - TSS region transcription start site region 107991
Tssr101511 11 54522813 to 54522824 11 + TSS region transcription start site region 101511
Rapgef6 11 54522847 to 54699285 176438 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 6
Tssr101512 11 54522852 to 54522861 9 + TSS region transcription start site region 101512
Tssr101513 11 54522872 to 54522895 23 + TSS region transcription start site region 101513
Tssr101514 11 54522898 to 54522909 11 + TSS region transcription start site region 101514
Tssr101515 11 54522928 to 54522939 11 + TSS region transcription start site region 101515
Tssr101516 11 54522951 to 54522976 25 + TSS region transcription start site region 101516
Tssr101517 11 54523313 to 54523360 47 + TSS region transcription start site region 101517
Tssr107992 11 54531033 to 54531052 19 - TSS region transcription start site region 107992
Tssr3500 11 54568193 to 54568197 4 + TSS region transcription start site region 3500
Tssr101518 11 54568198 to 54568213 15 + TSS region transcription start site region 101518
Tssr101519 11 54596101 to 54596128 27 + TSS region transcription start site region 101519
Tssr101520 11 54596129 to 54596155 26 + TSS region transcription start site region 101520
Tssr101521 11 54596196 to 54596230 34 + TSS region transcription start site region 101521
D11Mit241 11 54605066 to 54605190 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 241
Tssr107993 11 54619009 to 54619057 48 - TSS region transcription start site region 107993
Tssr101522 11 54626340 to 54626355 15 + TSS region transcription start site region 101522
Tssr101523 11 54626369 to 54626417 48 + TSS region transcription start site region 101523
Tssr101524 11 54626452 to 54626457 5 + TSS region transcription start site region 101524
Tssr101525 11 54626498 to 54626509 11 + TSS region transcription start site region 101525
Tssr101526 11 54626533 to 54626544 11 + TSS region transcription start site region 101526
Tssr101527 11 54626564 to 54626586 22 + TSS region transcription start site region 101527
Tssr101528 11 54626660 to 54626685 25 + TSS region transcription start site region 101528
Tssr101529 11 54645080 to 54645083 3 + TSS region transcription start site region 101529
Gm26116 11 54658497 to 54658573 76 - miRNA gene predicted gene, 26116
Tssr101530 11 54691422 to 54691442 20 + TSS region transcription start site region 101530
Tssr101531 11 54691449 to 54691452 3 + TSS region transcription start site region 101531
Tssr101532 11 54691460 to 54691487 27 + TSS region transcription start site region 101532
Tssr101533 11 54691508 to 54691521 13 + TSS region transcription start site region 101533
Tssr101534 11 54691525 to 54691540 15 + TSS region transcription start site region 101534
Tssr101535 11 54691541 to 54691552 11 + TSS region transcription start site region 101535
Tssr101536 11 54694621 to 54694641 20 + TSS region transcription start site region 101536
Tssr101537 11 54702086 to 54702090 4 + TSS region transcription start site region 101537
Cdc42se2 11 54717456 to 54787675 70219 - protein coding gene CDC42 small effector 2
Tssr107994 11 54726798 to 54726844 46 - TSS region transcription start site region 107994
Tssr107995 11 54727496 to 54727521 25 - TSS region transcription start site region 107995
Gm12227 11 54728677 to 54734323 5646 + antisense lncRNA gene predicted gene 12227
Gm12229 11 54746357 to 54746824 467 - pseudogene predicted gene 12229
Tssr107996 11 54764154 to 54764174 20 - TSS region transcription start site region 107996
Tssr107997 11 54764181 to 54764207 26 - TSS region transcription start site region 107997
D11Dcr10 11 54777830 to 54777925 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 10
Tssr107998 11 54778907 to 54778911 4 - TSS region transcription start site region 107998
Tssr107999 11 54780071 to 54780076 5 - TSS region transcription start site region 107999
Cpgi2889 11 54786841 to 54788085 1244 CpG island CpG island 2889
Tssr108000 11 54787597 to 54787711 114 - TSS region transcription start site region 108000
Tssr108001 11 54787717 to 54787720 3 - TSS region transcription start site region 108001