Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:54109761-54319766

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae44b 11 40059901 to 54203622 14143721 QTL experimental allergic encephalomyelitis susceptibility 44b
Vmbic10 11 42881799 to 54190238 11308439 QTL ventral midbrain iron content 10
Del(11Irf1-D11Mit23)1Rub 11 53770014 to 54236047 466033 cytogenetic marker deletion, Chr 11, Edward M Rubin 1
P4ha2 11 54100924 to 54131668 30744 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
Tssr101472 11 54124416 to 54124420 4 + TSS region transcription start site region 101472
Tssr101473 11 54124506 to 54124520 14 + TSS region transcription start site region 101473
Tssr101474 11 54141797 to 54141804 7 + TSS region transcription start site region 101474
Tssr3499 11 54141869 to 54141872 3 + TSS region transcription start site region 3499
Tssr101475 11 54141909 to 54141927 18 + TSS region transcription start site region 101475
Gm18323 11 54153990 to 54154697 707 - pseudogene predicted gene, 18323
Gm12221 11 54158926 to 54160056 1130 + pseudogene predicted gene 12221
Spqq1 11 54174844 to 63428696 9253852 QTL sperm quality QTL 1
Blmpf2 11 54174844 to 67187585 13012741 QTL bleomycin-induced pulmonary fibrosis 2
D11Mit310 11 54174844 to 54174968 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 310
4933405E24Rik 11 54177772 to 54213285 35513 - lincRNA gene RIKEN cDNA 4933405E24 gene
D11Mit86 11 54190115 to 54190238 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 86
Ckdbp2 11 54190115 to 65213015 11022900 QTL chronic kidney disease blood pressure locus 2
Skmw17 11 54190115 to 54190238 123 QTL skeletal muscle weight 17
Tssr101476 11 54199358 to 54199366 8 + TSS region transcription start site region 101476
Gm12222 11 54199433 to 54199692 259 + pseudogene predicted gene 12222
D11Mit140 11 54203495 to 54203622 127 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 140
Tssr101477 11 54214761 to 54214766 5 + TSS region transcription start site region 101477
Tssr107978 11 54225207 to 54225228 21 - TSS region transcription start site region 107978
D11Mit23 11 54235926 to 54236047 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 23
Pregq1 11 54235926 to 83842826 29606900 QTL pregnancy QTL 1
Csf2 11 54247271 to 54249667 2396 - protein coding gene colony stimulating factor 2 (granulocyte-macrophage)
Gm12223 11 54247600 to 54254495 6895 + antisense lncRNA gene predicted gene 12223
Tssr107979 11 54248481 to 54248492 11 - TSS region transcription start site region 107979
Tssr107980 11 54248505 to 54248516 11 - TSS region transcription start site region 107980
Tssr107981 11 54248554 to 54248561 7 - TSS region transcription start site region 107981
Tssr107982 11 54249001 to 54249012 11 - TSS region transcription start site region 107982
Tssr107983 11 54249335 to 54249385 50 - TSS region transcription start site region 107983
Tssr107984 11 54249640 to 54249644 4 - TSS region transcription start site region 107984
Tssr101478 11 54261755 to 54261763 8 + TSS region transcription start site region 101478
Il3 11 54265303 to 54267277 1974 - protein coding gene interleukin 3
Tssr107985 11 54267276 to 54267280 4 - TSS region transcription start site region 107985
Tssr101479 11 54270828 to 54270830 2 + TSS region transcription start site region 101479
Cpgi2886 11 54303782 to 54304764 982 CpG island CpG island 2886
Tssr101480 11 54303802 to 54303844 42 + TSS region transcription start site region 101480
Acsl6 11 54303824 to 54364756 60932 + protein coding gene acyl-CoA synthetase long-chain family member 6
Tssr101481 11 54304048 to 54304059 11 + TSS region transcription start site region 101481
Tssr101482 11 54304139 to 54304157 18 + TSS region transcription start site region 101482
Tssr101483 11 54304180 to 54304236 56 + TSS region transcription start site region 101483
Tssr101484 11 54304248 to 54304259 11 + TSS region transcription start site region 101484
Tssr107986 11 54310137 to 54310143 6 - TSS region transcription start site region 107986
Tssr101485 11 54314928 to 54314957 29 + TSS region transcription start site region 101485
Tssr101486 11 54314960 to 54314999 39 + TSS region transcription start site region 101486
Tssr101487 11 54315029 to 54315038 9 + TSS region transcription start site region 101487