Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:5395599-5646815

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Znrf3 11 5276329 to 5444847 168518 - protein coding gene zinc and ring finger 3
Tssr106623 11 5401276 to 5401282 6 - TSS region transcription start site region 106623
Tssr106624 11 5421562 to 5421566 4 - TSS region transcription start site region 106624
Cpgi2534 11 5443759 to 5445635 1876 CpG island CpG island 2534
Tssr106625 11 5444779 to 5444823 44 - TSS region transcription start site region 106625
Tssr106626 11 5444838 to 5444872 34 - TSS region transcription start site region 106626
Tssr106627 11 5478337 to 5478372 35 - TSS region transcription start site region 106627
Tssr100175 11 5485870 to 5485914 44 + TSS region transcription start site region 100175
Gm11962 11 5495192 to 5495446 254 - pseudogene predicted gene 11962
Tssr100176 11 5498676 to 5498689 13 + TSS region transcription start site region 100176
Gm11963 11 5498840 to 5505699 6859 + antisense lncRNA gene predicted gene 11963
Tssr100177 11 5505964 to 5505982 18 + TSS region transcription start site region 100177
Cpgi2535 11 5520599 to 5521815 1216 CpG island CpG island 2535
Tssr100178 11 5520652 to 5520656 4 + TSS region transcription start site region 100178
Xbp1 11 5520659 to 5525893 5234 + protein coding gene X-box binding protein 1
Tssr100179 11 5520951 to 5520966 15 + TSS region transcription start site region 100179
Tssr100180 11 5520970 to 5520989 19 + TSS region transcription start site region 100180
Tssr100181 11 5524789 to 5524804 15 + TSS region transcription start site region 100181
Tssr100182 11 5525191 to 5525204 13 + TSS region transcription start site region 100182
Tssr100183 11 5525255 to 5525275 20 + TSS region transcription start site region 100183
Tssr100184 11 5525474 to 5525486 12 + TSS region transcription start site region 100184
Ccdc117 11 5528887 to 5542187 13300 - protein coding gene coiled-coil domain containing 117
Cpgi2536 11 5541475 to 5542378 903 CpG island CpG island 2536
Tssr106628 11 5541768 to 5541774 6 - TSS region transcription start site region 106628
Tssr100185 11 5541872 to 5541893 21 + TSS region transcription start site region 100185
Tssr100186 11 5541896 to 5541929 33 + TSS region transcription start site region 100186
Tssr100187 11 5541932 to 5541942 10 + TSS region transcription start site region 100187
Tssr106629 11 5542139 to 5542170 31 - TSS region transcription start site region 106629
Tssr106630 11 5542177 to 5542219 42 - TSS region transcription start site region 106630
Tssr106631 11 5542226 to 5542243 17 - TSS region transcription start site region 106631
Tssr106632 11 5542244 to 5542267 23 - TSS region transcription start site region 106632
Tssr100188 11 5542441 to 5542446 5 + TSS region transcription start site region 100188
Gm22471 11 5560606 to 5560735 129 - snoRNA gene predicted gene, 22471
Gm3186 11 5563940 to 5564560 620 - pseudogene predicted gene 3186
Gm39573 11 5565391 to 5569118 3727 - lncRNA gene predicted gene, 39573
Tssr100189 11 5569679 to 5569690 11 + TSS region transcription start site region 100189
Ankrd36 11 5569684 to 5689337 119653 + protein coding gene ankyrin repeat domain 36
Tssr100190 11 5574107 to 5574115 8 + TSS region transcription start site region 100190
Tssr100191 11 5574156 to 5574167 11 + TSS region transcription start site region 100191
Tssr100192 11 5595435 to 5595438 3 + TSS region transcription start site region 100192
Tssr100193 11 5628740 to 5628754 14 + TSS region transcription start site region 100193
Tssr100194 11 5628756 to 5628767 11 + TSS region transcription start site region 100194
Cpgi2537 11 5634053 to 5634549 496 CpG island CpG island 2537
Gm11964 11 5634139 to 5634582 443 + pseudogene predicted gene 11964