Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:53790354-54170384

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12216 11 53785489 to 53859256 73767 - protein coding gene predicted gene 12216
Tssr101462 11 53805005 to 53805008 3 + TSS region transcription start site region 101462
Tssr107958 11 53805149 to 53805159 10 - TSS region transcription start site region 107958
Tssr107959 11 53818732 to 53818740 8 - TSS region transcription start site region 107959
Tssr107960 11 53837648 to 53837657 9 - TSS region transcription start site region 107960
Gm30785 11 53840170 to 53847711 7541 + lncRNA gene predicted gene, 30785
Tssr101463 11 53856959 to 53856985 26 + TSS region transcription start site region 101463
Cpgi2878 11 53858877 to 53859579 702 CpG island CpG island 2878
Tssr107961 11 53859187 to 53859241 54 - TSS region transcription start site region 107961
Slc22a5 11 53864542 to 53891660 27118 - protein coding gene solute carrier family 22 (organic cation transporter), member 5
Cpgi2879 11 53891049 to 53892124 1075 CpG island CpG island 2879
Tssr107962 11 53891612 to 53891623 11 - TSS region transcription start site region 107962
Tssr107963 11 53891638 to 53891656 18 - TSS region transcription start site region 107963
Tssr107964 11 53891668 to 53891708 40 - TSS region transcription start site region 107964
Gm12217 11 53902190 to 53903568 1378 + pseudogene predicted gene 12217
Gm12218 11 53902757 to 53903155 398 - pseudogene predicted gene 12218
Gm12220 11 53929305 to 53929476 171 - pseudogene predicted gene 12220
Slc22a21 11 53949965 to 53980332 30367 - protein coding gene solute carrier family 22 (organic cation transporter), member 21
Gm12219 11 53967063 to 53967505 442 - pseudogene predicted gene 12219
Cpgi2880 11 53979421 to 53980461 1040 CpG island CpG island 2880
Tssr107965 11 53979887 to 53979940 53 - TSS region transcription start site region 107965
Tssr107966 11 53979949 to 53979968 19 - TSS region transcription start site region 107966
Tssr101464 11 53980025 to 53980036 11 + TSS region transcription start site region 101464
Tssr101465 11 53980044 to 53980049 5 + TSS region transcription start site region 101465
Gm30927 11 53980225 to 53985970 5745 + lncRNA gene predicted gene, 30927
Tssr107967 11 53980271 to 53980283 12 - TSS region transcription start site region 107967
Tssr107968 11 53980296 to 53980350 54 - TSS region transcription start site region 107968
Tssr107969 11 53980354 to 53980384 30 - TSS region transcription start site region 107969
Slc22a4 11 53983123 to 54028090 44967 - protein coding gene solute carrier family 22 (organic cation transporter), member 4
Cpgi2881 11 54007782 to 54007954 172 CpG island CpG island 2881
Cpgi2882 11 54027519 to 54028867 1348 CpG island CpG island 2882
Tssr107970 11 54027739 to 54027746 7 - TSS region transcription start site region 107970
Tssr107971 11 54028096 to 54028111 15 - TSS region transcription start site region 107971
Tssr107972 11 54028137 to 54028148 11 - TSS region transcription start site region 107972
Tssr107973 11 54028611 to 54028630 19 - TSS region transcription start site region 107973
Tssr107974 11 54028711 to 54028721 10 - TSS region transcription start site region 107974
Tssr107975 11 54028789 to 54028803 14 - TSS region transcription start site region 107975
Pdlim4 11 54054928 to 54069014 14086 - protein coding gene PDZ and LIM domain 4
Cpgi2883 11 54068509 to 54069458 949 CpG island CpG island 2883
Tssr107976 11 54068950 to 54069017 67 - TSS region transcription start site region 107976
Tssr107977 11 54069213 to 54069256 43 - TSS region transcription start site region 107977
Tssr101466 11 54080597 to 54080601 4 + TSS region transcription start site region 101466
Tssr101467 11 54082999 to 54083011 12 + TSS region transcription start site region 101467
Cpgi2884 11 54100132 to 54101451 1319 CpG island CpG island 2884
P4ha2 11 54100924 to 54131668 30744 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
Tssr101468 11 54100969 to 54101025 56 + TSS region transcription start site region 101468
Tssr101469 11 54101034 to 54101043 9 + TSS region transcription start site region 101469
Tssr101470 11 54101228 to 54101275 47 + TSS region transcription start site region 101470
Tssr101471 11 54101581 to 54101590 9 + TSS region transcription start site region 101471
Tssr101472 11 54124416 to 54124420 4 + TSS region transcription start site region 101472
Tssr101473 11 54124506 to 54124520 14 + TSS region transcription start site region 101473
Tssr101474 11 54141797 to 54141804 7 + TSS region transcription start site region 101474
Tssr3499 11 54141869 to 54141872 3 + TSS region transcription start site region 3499
Tssr101475 11 54141909 to 54141927 18 + TSS region transcription start site region 101475
Gm18323 11 54153990 to 54154697 707 - pseudogene predicted gene, 18323
Gm12221 11 54158926 to 54160056 1130 + pseudogene predicted gene 12221