Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:53767190-54038568

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2877 11 53769637 to 53770898 1261 CpG island CpG island 2877
Tssr107957 11 53769747 to 53769780 33 - TSS region transcription start site region 107957
Irf1 11 53770014 to 53778374 8360 + protein coding gene interferon regulatory factor 1
Del(11Irf1-D11Mit23)1Rub 11 53770014 to 54236047 466033 cytogenetic marker deletion, Chr 11, Edward M Rubin 1
Tssr101450 11 53770042 to 53770057 15 + TSS region transcription start site region 101450
Tssr101451 11 53770458 to 53770505 47 + TSS region transcription start site region 101451
Tssr101452 11 53770806 to 53770823 17 + TSS region transcription start site region 101452
Tssr101453 11 53770977 to 53770980 3 + TSS region transcription start site region 101453
Tssr101454 11 53771267 to 53771277 10 + TSS region transcription start site region 101454
Tssr101455 11 53771372 to 53771388 16 + TSS region transcription start site region 101455
Tssr101456 11 53771710 to 53771722 12 + TSS region transcription start site region 101456
Tssr101457 11 53771757 to 53771768 11 + TSS region transcription start site region 101457
Tssr101458 11 53772070 to 53772087 17 + TSS region transcription start site region 101458
Tssr101459 11 53772107 to 53772127 20 + TSS region transcription start site region 101459
Gm17334 11 53772281 to 53773187 906 - protein coding gene predicted gene, 17334
Tssr101460 11 53785488 to 53785491 3 + TSS region transcription start site region 101460
Gm12216 11 53785489 to 53859256 73767 - protein coding gene predicted gene 12216
Tssr101461 11 53786817 to 53786821 4 + TSS region transcription start site region 101461
Tssr101462 11 53805005 to 53805008 3 + TSS region transcription start site region 101462
Tssr107958 11 53805149 to 53805159 10 - TSS region transcription start site region 107958
Tssr107959 11 53818732 to 53818740 8 - TSS region transcription start site region 107959
Tssr107960 11 53837648 to 53837657 9 - TSS region transcription start site region 107960
Gm30785 11 53840170 to 53847711 7541 + lncRNA gene predicted gene, 30785
Tssr101463 11 53856959 to 53856985 26 + TSS region transcription start site region 101463
Cpgi2878 11 53858877 to 53859579 702 CpG island CpG island 2878
Tssr107961 11 53859187 to 53859241 54 - TSS region transcription start site region 107961
Slc22a5 11 53864542 to 53891660 27118 - protein coding gene solute carrier family 22 (organic cation transporter), member 5
Cpgi2879 11 53891049 to 53892124 1075 CpG island CpG island 2879
Tssr107962 11 53891612 to 53891623 11 - TSS region transcription start site region 107962
Tssr107963 11 53891638 to 53891656 18 - TSS region transcription start site region 107963
Tssr107964 11 53891668 to 53891708 40 - TSS region transcription start site region 107964
Gm12217 11 53902190 to 53903568 1378 + pseudogene predicted gene 12217
Gm12218 11 53902757 to 53903155 398 - pseudogene predicted gene 12218
Gm12220 11 53929305 to 53929476 171 - pseudogene predicted gene 12220
Slc22a21 11 53949965 to 53980332 30367 - protein coding gene solute carrier family 22 (organic cation transporter), member 21
Gm12219 11 53967063 to 53967505 442 - pseudogene predicted gene 12219
Cpgi2880 11 53979421 to 53980461 1040 CpG island CpG island 2880
Tssr107965 11 53979887 to 53979940 53 - TSS region transcription start site region 107965
Tssr107966 11 53979949 to 53979968 19 - TSS region transcription start site region 107966
Tssr101464 11 53980025 to 53980036 11 + TSS region transcription start site region 101464
Tssr101465 11 53980044 to 53980049 5 + TSS region transcription start site region 101465
Gm30927 11 53980225 to 53985970 5745 + lncRNA gene predicted gene, 30927
Tssr107967 11 53980271 to 53980283 12 - TSS region transcription start site region 107967
Tssr107968 11 53980296 to 53980350 54 - TSS region transcription start site region 107968
Tssr107969 11 53980354 to 53980384 30 - TSS region transcription start site region 107969
Slc22a4 11 53983123 to 54028090 44967 - protein coding gene solute carrier family 22 (organic cation transporter), member 4
Cpgi2881 11 54007782 to 54007954 172 CpG island CpG island 2881
Cpgi2882 11 54027519 to 54028867 1348 CpG island CpG island 2882
Tssr107970 11 54027739 to 54027746 7 - TSS region transcription start site region 107970
Tssr107971 11 54028096 to 54028111 15 - TSS region transcription start site region 107971
Tssr107972 11 54028137 to 54028148 11 - TSS region transcription start site region 107972
Tssr107973 11 54028611 to 54028630 19 - TSS region transcription start site region 107973
Tssr107974 11 54028711 to 54028721 10 - TSS region transcription start site region 107974
Tssr107975 11 54028789 to 54028803 14 - TSS region transcription start site region 107975