Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:53685029-56135077

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501 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae44b 11 40059901 to 54203622 14143721 QTL experimental allergic encephalomyelitis susceptibility 44b
Vmbic10 11 42881799 to 54190238 11308439 QTL ventral midbrain iron content 10
Tcpm1 11 51561652 to 53725103 2163451 QTL T cell phenotype modifier 1
Rad50 11 53649519 to 53707319 57800 - protein coding gene RAD50 double strand break repair protein
Gm22275 11 53701179 to 53701488 309 + unclassified non-coding RNA gene predicted gene, 22275
Tssr107948 11 53705684 to 53705725 41 - TSS region transcription start site region 107948
Cpgi2874 11 53706702 to 53707645 943 CpG island CpG island 2874
Tssr101428 11 53706783 to 53706814 31 + TSS region transcription start site region 101428
Tssr101429 11 53706817 to 53706829 12 + TSS region transcription start site region 101429
Tssr107949 11 53707269 to 53707332 63 - TSS region transcription start site region 107949
Tssr101430 11 53707413 to 53707433 20 + TSS region transcription start site region 101430
Tssr101431 11 53707752 to 53707762 10 + TSS region transcription start site region 101431
Tssr107950 11 53713081 to 53713086 5 - TSS region transcription start site region 107950
Tssr101432 11 53719444 to 53719460 16 + TSS region transcription start site region 101432
Tssr101433 11 53719960 to 53719974 14 + TSS region transcription start site region 101433
Tssr101434 11 53719990 to 53720004 14 + TSS region transcription start site region 101434
Tssr101435 11 53720010 to 53720027 17 + TSS region transcription start site region 101435
Tssr101436 11 53720081 to 53720088 7 + TSS region transcription start site region 101436
Tssr101437 11 53720790 to 53720795 5 + TSS region transcription start site region 101437
Il5 11 53720794 to 53725103 4309 + protein coding gene interleukin 5
Tssr101438 11 53721903 to 53721929 26 + TSS region transcription start site region 101438
Tria1 11 53722738 to 53723028 290 QTL T cell receptor induced activation 1
D11Nds9 11 53722738 to 53723028 290 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 9
Tssr101439 11 53723732 to 53723747 15 + TSS region transcription start site region 101439
Tssr101440 11 53723768 to 53723790 22 + TSS region transcription start site region 101440
Tssr101441 11 53723938 to 53723955 17 + TSS region transcription start site region 101441
Gm12214 11 53723953 to 53724618 665 - antisense lncRNA gene predicted gene 12214
Tssr101442 11 53723995 to 53724024 29 + TSS region transcription start site region 101442
Tssr101443 11 53724099 to 53724111 12 + TSS region transcription start site region 101443
Tssr107951 11 53724348 to 53724357 9 - TSS region transcription start site region 107951
Tssr107952 11 53724390 to 53724409 19 - TSS region transcription start site region 107952
Tssr101444 11 53724497 to 53724508 11 + TSS region transcription start site region 101444
Tssr107953 11 53724509 to 53724528 19 - TSS region transcription start site region 107953
Tssr101445 11 53724585 to 53724599 14 + TSS region transcription start site region 101445
Tssr101446 11 53724618 to 53724639 21 + TSS region transcription start site region 101446
Tssr101447 11 53724654 to 53724655 1 + TSS region transcription start site region 101447
Gm12213 11 53733579 to 53733931 352 + pseudogene predicted gene 12213
Cpgi2875 11 53735572 to 53736040 468 CpG island CpG island 2875
Tssr101448 11 53752968 to 53752973 5 + TSS region transcription start site region 101448
Cpgi2876 11 53762935 to 53764195 1260 CpG island CpG island 2876
Mir7671 11 53763597 to 53763654 57 - miRNA gene microRNA 7671
Tssr107954 11 53763681 to 53763693 12 - TSS region transcription start site region 107954
Tssr101449 11 53763820 to 53763856 36 + TSS region transcription start site region 101449
Tssr107955 11 53763906 to 53763916 10 - TSS region transcription start site region 107955
Tssr107956 11 53763960 to 53763974 14 - TSS region transcription start site region 107956
Cpgi2877 11 53769637 to 53770898 1261 CpG island CpG island 2877
Tssr107957 11 53769747 to 53769780 33 - TSS region transcription start site region 107957
Del(11Irf1-D11Mit23)1Rub 11 53770014 to 54236047 466033 cytogenetic marker deletion, Chr 11, Edward M Rubin 1
Irf1 11 53770014 to 53778374 8360 + protein coding gene interferon regulatory factor 1
Tssr101450 11 53770042 to 53770057 15 + TSS region transcription start site region 101450
Tssr101451 11 53770458 to 53770505 47 + TSS region transcription start site region 101451
Tssr101452 11 53770806 to 53770823 17 + TSS region transcription start site region 101452
Tssr101453 11 53770977 to 53770980 3 + TSS region transcription start site region 101453
Tssr101454 11 53771267 to 53771277 10 + TSS region transcription start site region 101454
Tssr101455 11 53771372 to 53771388 16 + TSS region transcription start site region 101455
Tssr101456 11 53771710 to 53771722 12 + TSS region transcription start site region 101456
Tssr101457 11 53771757 to 53771768 11 + TSS region transcription start site region 101457
Tssr101458 11 53772070 to 53772087 17 + TSS region transcription start site region 101458
Tssr101459 11 53772107 to 53772127 20 + TSS region transcription start site region 101459
Gm17334 11 53772281 to 53773187 906 - protein coding gene predicted gene, 17334
Tssr101460 11 53785488 to 53785491 3 + TSS region transcription start site region 101460
Gm12216 11 53785489 to 53859256 73767 - protein coding gene predicted gene 12216
Tssr101461 11 53786817 to 53786821 4 + TSS region transcription start site region 101461
Tssr101462 11 53805005 to 53805008 3 + TSS region transcription start site region 101462
Tssr107958 11 53805149 to 53805159 10 - TSS region transcription start site region 107958
Tssr107959 11 53818732 to 53818740 8 - TSS region transcription start site region 107959
Tssr107960 11 53837648 to 53837657 9 - TSS region transcription start site region 107960
Gm30785 11 53840170 to 53847711 7541 + lncRNA gene predicted gene, 30785
Tssr101463 11 53856959 to 53856985 26 + TSS region transcription start site region 101463
Cpgi2878 11 53858877 to 53859579 702 CpG island CpG island 2878
Tssr107961 11 53859187 to 53859241 54 - TSS region transcription start site region 107961
Slc22a5 11 53864542 to 53891660 27118 - protein coding gene solute carrier family 22 (organic cation transporter), member 5
Cpgi2879 11 53891049 to 53892124 1075 CpG island CpG island 2879
Tssr107962 11 53891612 to 53891623 11 - TSS region transcription start site region 107962
Tssr107963 11 53891638 to 53891656 18 - TSS region transcription start site region 107963
Tssr107964 11 53891668 to 53891708 40 - TSS region transcription start site region 107964
Gm12217 11 53902190 to 53903568 1378 + pseudogene predicted gene 12217
Gm12218 11 53902757 to 53903155 398 - pseudogene predicted gene 12218
Gm12220 11 53929305 to 53929476 171 - pseudogene predicted gene 12220
Slc22a21 11 53949965 to 53980332 30367 - protein coding gene solute carrier family 22 (organic cation transporter), member 21
Gm12219 11 53967063 to 53967505 442 - pseudogene predicted gene 12219
Cpgi2880 11 53979421 to 53980461 1040 CpG island CpG island 2880
Tssr107965 11 53979887 to 53979940 53 - TSS region transcription start site region 107965
Tssr107966 11 53979949 to 53979968 19 - TSS region transcription start site region 107966
Tssr101464 11 53980025 to 53980036 11 + TSS region transcription start site region 101464
Tssr101465 11 53980044 to 53980049 5 + TSS region transcription start site region 101465
Gm30927 11 53980225 to 53985970 5745 + lncRNA gene predicted gene, 30927
Tssr107967 11 53980271 to 53980283 12 - TSS region transcription start site region 107967
Tssr107968 11 53980296 to 53980350 54 - TSS region transcription start site region 107968
Tssr107969 11 53980354 to 53980384 30 - TSS region transcription start site region 107969
Slc22a4 11 53983123 to 54028090 44967 - protein coding gene solute carrier family 22 (organic cation transporter), member 4
Cpgi2881 11 54007782 to 54007954 172 CpG island CpG island 2881
Cpgi2882 11 54027519 to 54028867 1348 CpG island CpG island 2882
Tssr107970 11 54027739 to 54027746 7 - TSS region transcription start site region 107970
Tssr107971 11 54028096 to 54028111 15 - TSS region transcription start site region 107971
Tssr107972 11 54028137 to 54028148 11 - TSS region transcription start site region 107972
Tssr107973 11 54028611 to 54028630 19 - TSS region transcription start site region 107973
Tssr107974 11 54028711 to 54028721 10 - TSS region transcription start site region 107974
Tssr107975 11 54028789 to 54028803 14 - TSS region transcription start site region 107975
Pdlim4 11 54054928 to 54069014 14086 - protein coding gene PDZ and LIM domain 4
Cpgi2883 11 54068509 to 54069458 949 CpG island CpG island 2883
Tssr107976 11 54068950 to 54069017 67 - TSS region transcription start site region 107976
Tssr107977 11 54069213 to 54069256 43 - TSS region transcription start site region 107977
Tssr101466 11 54080597 to 54080601 4 + TSS region transcription start site region 101466
Tssr101467 11 54082999 to 54083011 12 + TSS region transcription start site region 101467
Cpgi2884 11 54100132 to 54101451 1319 CpG island CpG island 2884
P4ha2 11 54100924 to 54131668 30744 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
Tssr101468 11 54100969 to 54101025 56 + TSS region transcription start site region 101468
Tssr101469 11 54101034 to 54101043 9 + TSS region transcription start site region 101469
Tssr101470 11 54101228 to 54101275 47 + TSS region transcription start site region 101470
Tssr101471 11 54101581 to 54101590 9 + TSS region transcription start site region 101471
Tssr101472 11 54124416 to 54124420 4 + TSS region transcription start site region 101472
Tssr101473 11 54124506 to 54124520 14 + TSS region transcription start site region 101473
Tssr101474 11 54141797 to 54141804 7 + TSS region transcription start site region 101474
Tssr3499 11 54141869 to 54141872 3 + TSS region transcription start site region 3499
Tssr101475 11 54141909 to 54141927 18 + TSS region transcription start site region 101475
Gm18323 11 54153990 to 54154697 707 - pseudogene predicted gene, 18323
Gm12221 11 54158926 to 54160056 1130 + pseudogene predicted gene 12221
Spqq1 11 54174844 to 63428696 9253852 QTL sperm quality QTL 1
Blmpf2 11 54174844 to 67187585 13012741 QTL bleomycin-induced pulmonary fibrosis 2
D11Mit310 11 54174844 to 54174968 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 310
4933405E24Rik 11 54177772 to 54213285 35513 - lincRNA gene RIKEN cDNA 4933405E24 gene
Ckdbp2 11 54190115 to 65213015 11022900 QTL chronic kidney disease blood pressure locus 2
D11Mit86 11 54190115 to 54190238 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 86
Skmw17 11 54190115 to 54190238 123 QTL skeletal muscle weight 17
Tssr101476 11 54199358 to 54199366 8 + TSS region transcription start site region 101476
Gm12222 11 54199433 to 54199692 259 + pseudogene predicted gene 12222
D11Mit140 11 54203495 to 54203622 127 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 140
Tssr101477 11 54214761 to 54214766 5 + TSS region transcription start site region 101477
Tssr107978 11 54225207 to 54225228 21 - TSS region transcription start site region 107978
D11Mit23 11 54235926 to 54236047 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 23
Pregq1 11 54235926 to 83842826 29606900 QTL pregnancy QTL 1
Csf2 11 54247271 to 54249667 2396 - protein coding gene colony stimulating factor 2 (granulocyte-macrophage)
Gm12223 11 54247600 to 54254495 6895 + antisense lncRNA gene predicted gene 12223
Tssr107979 11 54248481 to 54248492 11 - TSS region transcription start site region 107979
Tssr107980 11 54248505 to 54248516 11 - TSS region transcription start site region 107980
Tssr107981 11 54248554 to 54248561 7 - TSS region transcription start site region 107981
Tssr107982 11 54249001 to 54249012 11 - TSS region transcription start site region 107982
Tssr107983 11 54249335 to 54249385 50 - TSS region transcription start site region 107983
Tssr107984 11 54249640 to 54249644 4 - TSS region transcription start site region 107984
Tssr101478 11 54261755 to 54261763 8 + TSS region transcription start site region 101478
Il3 11 54265303 to 54267277 1974 - protein coding gene interleukin 3
Tssr107985 11 54267276 to 54267280 4 - TSS region transcription start site region 107985
Tssr101479 11 54270828 to 54270830 2 + TSS region transcription start site region 101479
Cpgi2886 11 54303782 to 54304764 982 CpG island CpG island 2886
Tssr101480 11 54303802 to 54303844 42 + TSS region transcription start site region 101480
Acsl6 11 54303824 to 54364756 60932 + protein coding gene acyl-CoA synthetase long-chain family member 6
Tssr101481 11 54304048 to 54304059 11 + TSS region transcription start site region 101481
Tssr101482 11 54304139 to 54304157 18 + TSS region transcription start site region 101482
Tssr101483 11 54304180 to 54304236 56 + TSS region transcription start site region 101483
Tssr101484 11 54304248 to 54304259 11 + TSS region transcription start site region 101484
Tssr107986 11 54310137 to 54310143 6 - TSS region transcription start site region 107986
Tssr101485 11 54314928 to 54314957 29 + TSS region transcription start site region 101485
Tssr101486 11 54314960 to 54314999 39 + TSS region transcription start site region 101486
Tssr101487 11 54315029 to 54315038 9 + TSS region transcription start site region 101487
Tssr101488 11 54327026 to 54327033 7 + TSS region transcription start site region 101488
Tssr101489 11 54327044 to 54327053 9 + TSS region transcription start site region 101489
Gm12224 11 54340342 to 54345245 4903 - antisense lncRNA gene predicted gene 12224
Tssr107987 11 54353247 to 54353259 12 - TSS region transcription start site region 107987
Tssr107988 11 54353286 to 54353296 10 - TSS region transcription start site region 107988
Tssr107989 11 54353458 to 54353478 20 - TSS region transcription start site region 107989
Tssr101490 11 54370598 to 54370613 15 + TSS region transcription start site region 101490
Tssr101491 11 54370616 to 54370623 7 + TSS region transcription start site region 101491
Tssr101492 11 54370625 to 54370632 7 + TSS region transcription start site region 101492
Meikin 11 54370652 to 54426790 56138 + protein coding gene meiotic kinetochore factor
Gm17884 11 54375123 to 54376641 1518 + pseudogene predicted gene, 17884
Tssr101493 11 54400952 to 54400976 24 + TSS region transcription start site region 101493
Tssr101494 11 54401013 to 54401036 23 + TSS region transcription start site region 101494
Gm12226 11 54401092 to 54401967 875 + pseudogene predicted pseudogene 12226
Gm12225 11 54404140 to 54404437 297 + pseudogene predicted gene 12225
Tssr101495 11 54437768 to 54437773 5 + TSS region transcription start site region 101495
Cpgi2887 11 54437815 to 54438834 1019 CpG island CpG island 2887
Tssr107990 11 54437932 to 54437948 16 - TSS region transcription start site region 107990
Tssr101496 11 54438159 to 54438187 28 + TSS region transcription start site region 101496
Tssr101497 11 54438188 to 54438220 32 + TSS region transcription start site region 101497
Fnip1 11 54438199 to 54518235 80036 + protein coding gene folliculin interacting protein 1
Tssr101498 11 54438273 to 54438284 11 + TSS region transcription start site region 101498
Tssr101499 11 54438474 to 54438503 29 + TSS region transcription start site region 101499
Tssr101500 11 54446964 to 54446973 9 + TSS region transcription start site region 101500
Tssr101501 11 54450684 to 54450688 4 + TSS region transcription start site region 101501
Tssr101502 11 54455751 to 54455753 2 + TSS region transcription start site region 101502
Gm24198 11 54458162 to 54458269 107 + snRNA gene predicted gene, 24198
Tssr101503 11 54486421 to 54486424 3 + TSS region transcription start site region 101503
Tssr101504 11 54496035 to 54496039 4 + TSS region transcription start site region 101504
Tssr101505 11 54507278 to 54507287 9 + TSS region transcription start site region 101505
Tssr101506 11 54516156 to 54516167 11 + TSS region transcription start site region 101506
Tssr101507 11 54516298 to 54516320 22 + TSS region transcription start site region 101507
Tssr101508 11 54516715 to 54516728 13 + TSS region transcription start site region 101508
Tssr101509 11 54516777 to 54516789 12 + TSS region transcription start site region 101509
Tssr101510 11 54516799 to 54516802 3 + TSS region transcription start site region 101510
Cpgi2888 11 54522415 to 54523471 1056 CpG island CpG island 2888
Tssr107991 11 54522647 to 54522660 13 - TSS region transcription start site region 107991
Tssr101511 11 54522813 to 54522824 11 + TSS region transcription start site region 101511
Rapgef6 11 54522847 to 54699285 176438 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 6
Tssr101512 11 54522852 to 54522861 9 + TSS region transcription start site region 101512
Tssr101513 11 54522872 to 54522895 23 + TSS region transcription start site region 101513
Tssr101514 11 54522898 to 54522909 11 + TSS region transcription start site region 101514
Tssr101515 11 54522928 to 54522939 11 + TSS region transcription start site region 101515
Tssr101516 11 54522951 to 54522976 25 + TSS region transcription start site region 101516
Tssr101517 11 54523313 to 54523360 47 + TSS region transcription start site region 101517