Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:53463712-53623736

Filter by:
47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shroom1 11 53457205 to 53467766 10561 + protein coding gene shroom family member 1
Cpgi2864 11 53463254 to 53464152 898 CpG island CpG island 2864
Cpgi2865 11 53466356 to 53467091 735 CpG island CpG island 2865
Gm9837 11 53469749 to 53470479 730 - protein coding gene predicted gene 9837
Cpgi2866 11 53470059 to 53470578 519 CpG island CpG island 2866
Sowaha 11 53476578 to 53480195 3617 - protein coding gene sosondowah ankyrin repeat domain family member A
Cpgi2867 11 53478232 to 53480325 2093 CpG island CpG island 2867
Tssr101406 11 53478851 to 53478858 7 + TSS region transcription start site region 101406
Tssr107929 11 53479960 to 53479990 30 - TSS region transcription start site region 107929
Tssr107930 11 53480010 to 53480024 14 - TSS region transcription start site region 107930
Tssr107931 11 53480159 to 53480176 17 - TSS region transcription start site region 107931
Gm9945 11 53480166 to 53481097 931 + protein coding gene predicted gene 9945
Tssr107932 11 53480178 to 53480216 38 - TSS region transcription start site region 107932
Tssr107933 11 53480222 to 53480241 19 - TSS region transcription start site region 107933
Gm19835 11 53483084 to 53487995 4911 - lncRNA gene predicted gene, 19835
Cpgi2868 11 53487318 to 53487593 275 CpG island CpG island 2868
Tssr101407 11 53501158 to 53501159 1 + TSS region transcription start site region 101407
Rpl9-ps3 11 53501184 to 53501759 575 + pseudogene ribosomal protein L9, pseudogene 3
Tssr101408 11 53515314 to 53515316 2 + TSS region transcription start site region 101408
Cpgi2869 11 53519389 to 53520620 1231 CpG island CpG island 2869
Tssr101409 11 53519725 to 53519791 66 + TSS region transcription start site region 101409
Sept8 11 53519736 to 53549603 29867 + protein coding gene septin 8
Tssr101410 11 53519871 to 53519917 46 + TSS region transcription start site region 101410
Tssr101411 11 53519920 to 53519933 13 + TSS region transcription start site region 101411
Tssr101412 11 53519968 to 53519977 9 + TSS region transcription start site region 101412
Cpgi2870 11 53539158 to 53539419 261 CpG island CpG island 2870
Tssr101413 11 53543712 to 53543736 24 + TSS region transcription start site region 101413
Cycl 11 53548198 to 53548497 299 - pseudogene cyclin-like
Tssr101414 11 53548743 to 53548748 5 + TSS region transcription start site region 101414
A430108G06Rik 11 53564688 to 53567313 2625 - lncRNA gene RIKEN cDNA A430108G06 gene
Cpgi2871 11 53567144 to 53568013 869 CpG island CpG island 2871
Tssr101415 11 53567361 to 53567428 67 + TSS region transcription start site region 101415
Kif3a 11 53567379 to 53601967 34588 + protein coding gene kinesin family member 3A
Tssr101416 11 53582220 to 53582226 6 + TSS region transcription start site region 101416
Tssr101417 11 53583894 to 53583906 12 + TSS region transcription start site region 101417
Tssr101418 11 53583920 to 53583934 14 + TSS region transcription start site region 101418
Tssr101419 11 53583962 to 53583973 11 + TSS region transcription start site region 101419
Tssr101420 11 53584373 to 53584393 20 + TSS region transcription start site region 101420
Tssr101421 11 53586831 to 53586843 12 + TSS region transcription start site region 101421
Tssr107934 11 53586905 to 53586925 20 - TSS region transcription start site region 107934
Cpgi2872 11 53590499 to 53590685 186 CpG island CpG island 2872
Lbw8 11 53612460 to 53618665 6205 QTL lupus NZB x NZW 8
Il4 11 53612460 to 53618665 6205 - protein coding gene interleukin 4
Tssr107935 11 53617275 to 53617295 20 - TSS region transcription start site region 107935
Tssr107936 11 53617333 to 53617366 33 - TSS region transcription start site region 107936
D11Mit111 11 53618045 to 53618173 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 111
Tssr107937 11 53618659 to 53618668 9 - TSS region transcription start site region 107937