Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:53419736-53649603

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aff4 11 53350833 to 53421830 70997 + protein coding gene AF4/FMR2 family, member 4
Leap2 11 53422181 to 53423136 955 - protein coding gene liver-expressed antimicrobial peptide 2
Tssr107920 11 53423123 to 53423135 12 - TSS region transcription start site region 107920
Uqcrq 11 53427922 to 53430831 2909 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit VII
Cpgi2862 11 53430224 to 53431519 1295 CpG island CpG island 2862
Tssr107921 11 53430380 to 53430389 9 - TSS region transcription start site region 107921
Tssr107922 11 53430392 to 53430405 13 - TSS region transcription start site region 107922
Tssr107923 11 53430417 to 53430433 16 - TSS region transcription start site region 107923
Tssr107924 11 53430445 to 53430464 19 - TSS region transcription start site region 107924
Tssr101401 11 53430453 to 53430464 11 + TSS region transcription start site region 101401
Tssr107925 11 53430468 to 53430480 12 - TSS region transcription start site region 107925
Tssr107926 11 53430497 to 53430507 10 - TSS region transcription start site region 107926
Tssr107927 11 53430750 to 53430761 11 - TSS region transcription start site region 107927
Tssr107928 11 53430779 to 53430838 59 - TSS region transcription start site region 107928
Gdf9 11 53431023 to 53437904 6881 + protein coding gene growth differentiation factor 9
Tssr101402 11 53433347 to 53433357 10 + TSS region transcription start site region 101402
Gm30585 11 53452365 to 53454789 2424 - lncRNA gene predicted gene, 30585
D11Mit24 11 53453326 to 53453562 236 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 24
Gm10447 11 53454804 to 53457110 2306 - protein coding gene predicted gene 10447
Cpgi2863 11 53456976 to 53457707 731 CpG island CpG island 2863
Tssr101403 11 53457184 to 53457201 17 + TSS region transcription start site region 101403
Shroom1 11 53457205 to 53467766 10561 + protein coding gene shroom family member 1
Tssr101404 11 53457209 to 53457265 56 + TSS region transcription start site region 101404
Tssr101405 11 53457273 to 53457300 27 + TSS region transcription start site region 101405
Gm12212 11 53462379 to 53463613 1234 - antisense lncRNA gene predicted gene 12212
Cpgi2864 11 53463254 to 53464152 898 CpG island CpG island 2864
Cpgi2865 11 53466356 to 53467091 735 CpG island CpG island 2865
Gm9837 11 53469749 to 53470479 730 - protein coding gene predicted gene 9837
Cpgi2866 11 53470059 to 53470578 519 CpG island CpG island 2866
Sowaha 11 53476578 to 53480195 3617 - protein coding gene sosondowah ankyrin repeat domain family member A
Cpgi2867 11 53478232 to 53480325 2093 CpG island CpG island 2867
Tssr101406 11 53478851 to 53478858 7 + TSS region transcription start site region 101406
Tssr107929 11 53479960 to 53479990 30 - TSS region transcription start site region 107929
Tssr107930 11 53480010 to 53480024 14 - TSS region transcription start site region 107930
Tssr107931 11 53480159 to 53480176 17 - TSS region transcription start site region 107931
Gm9945 11 53480166 to 53481097 931 + protein coding gene predicted gene 9945
Tssr107932 11 53480178 to 53480216 38 - TSS region transcription start site region 107932
Tssr107933 11 53480222 to 53480241 19 - TSS region transcription start site region 107933
Gm19835 11 53483084 to 53487995 4911 - lncRNA gene predicted gene, 19835
Cpgi2868 11 53487318 to 53487593 275 CpG island CpG island 2868
Tssr101407 11 53501158 to 53501159 1 + TSS region transcription start site region 101407
Rpl9-ps3 11 53501184 to 53501759 575 + pseudogene ribosomal protein L9, pseudogene 3
Tssr101408 11 53515314 to 53515316 2 + TSS region transcription start site region 101408
Cpgi2869 11 53519389 to 53520620 1231 CpG island CpG island 2869
Tssr101409 11 53519725 to 53519791 66 + TSS region transcription start site region 101409
Sept8 11 53519736 to 53549603 29867 + protein coding gene septin 8
Tssr101410 11 53519871 to 53519917 46 + TSS region transcription start site region 101410
Tssr101411 11 53519920 to 53519933 13 + TSS region transcription start site region 101411
Tssr101412 11 53519968 to 53519977 9 + TSS region transcription start site region 101412
Cpgi2870 11 53539158 to 53539419 261 CpG island CpG island 2870
Tssr101413 11 53543712 to 53543736 24 + TSS region transcription start site region 101413
Cycl 11 53548198 to 53548497 299 - pseudogene cyclin-like
Tssr101414 11 53548743 to 53548748 5 + TSS region transcription start site region 101414
A430108G06Rik 11 53564688 to 53567313 2625 - lncRNA gene RIKEN cDNA A430108G06 gene
Cpgi2871 11 53567144 to 53568013 869 CpG island CpG island 2871
Tssr101415 11 53567361 to 53567428 67 + TSS region transcription start site region 101415
Kif3a 11 53567379 to 53601967 34588 + protein coding gene kinesin family member 3A
Tssr101416 11 53582220 to 53582226 6 + TSS region transcription start site region 101416
Tssr101417 11 53583894 to 53583906 12 + TSS region transcription start site region 101417
Tssr101418 11 53583920 to 53583934 14 + TSS region transcription start site region 101418
Tssr101419 11 53583962 to 53583973 11 + TSS region transcription start site region 101419
Tssr101420 11 53584373 to 53584393 20 + TSS region transcription start site region 101420
Tssr101421 11 53586831 to 53586843 12 + TSS region transcription start site region 101421
Tssr107934 11 53586905 to 53586925 20 - TSS region transcription start site region 107934
Cpgi2872 11 53590499 to 53590685 186 CpG island CpG island 2872
Lbw8 11 53612460 to 53618665 6205 QTL lupus NZB x NZW 8
Il4 11 53612460 to 53618665 6205 - protein coding gene interleukin 4
Tssr107935 11 53617275 to 53617295 20 - TSS region transcription start site region 107935
Tssr107936 11 53617333 to 53617366 33 - TSS region transcription start site region 107936
D11Mit111 11 53618045 to 53618173 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 111
Tssr107937 11 53618659 to 53618668 9 - TSS region transcription start site region 107937
Il13 11 53631324 to 53634702 3378 - protein coding gene interleukin 13
Tssr107938 11 53631699 to 53631710 11 - TSS region transcription start site region 107938
Tssr101422 11 53631823 to 53631856 33 + TSS region transcription start site region 101422
Tssr107939 11 53631865 to 53631885 20 - TSS region transcription start site region 107939
Tssr101423 11 53631877 to 53631906 29 + TSS region transcription start site region 101423
Tssr101424 11 53631941 to 53631954 13 + TSS region transcription start site region 101424
Tssr101425 11 53631980 to 53631989 9 + TSS region transcription start site region 101425
Tssr101426 11 53632040 to 53632056 16 + TSS region transcription start site region 101426
Tssr101427 11 53632067 to 53632085 18 + TSS region transcription start site region 101427
Tssr107940 11 53632110 to 53632126 16 - TSS region transcription start site region 107940
Tssr107941 11 53632141 to 53632168 27 - TSS region transcription start site region 107941
Tssr107942 11 53632571 to 53632590 19 - TSS region transcription start site region 107942
Tssr107943 11 53633208 to 53633218 10 - TSS region transcription start site region 107943
Tssr107944 11 53634698 to 53634703 5 - TSS region transcription start site region 107944
Cpgi2873 11 53635737 to 53636642 905 CpG island CpG island 2873
Rps2-ps4 11 53645744 to 53646376 632 + pseudogene ribosomal protein S2, pseudogene 4
Rad50 11 53649519 to 53707319 57800 - protein coding gene RAD50 double strand break repair protein