Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:53409348-54039357

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcpm1 11 51561652 to 53725103 2163451 QTL T cell phenotype modifier 1
Aff4 11 53350833 to 53421830 70997 + protein coding gene AF4/FMR2 family, member 4
Leap2 11 53422181 to 53423136 955 - protein coding gene liver-expressed antimicrobial peptide 2
Tssr107920 11 53423123 to 53423135 12 - TSS region transcription start site region 107920
Uqcrq 11 53427922 to 53430831 2909 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit VII
Cpgi2862 11 53430224 to 53431519 1295 CpG island CpG island 2862
Tssr107921 11 53430380 to 53430389 9 - TSS region transcription start site region 107921
Tssr107922 11 53430392 to 53430405 13 - TSS region transcription start site region 107922
Tssr107923 11 53430417 to 53430433 16 - TSS region transcription start site region 107923
Tssr107924 11 53430445 to 53430464 19 - TSS region transcription start site region 107924
Tssr101401 11 53430453 to 53430464 11 + TSS region transcription start site region 101401
Tssr107925 11 53430468 to 53430480 12 - TSS region transcription start site region 107925
Tssr107926 11 53430497 to 53430507 10 - TSS region transcription start site region 107926
Tssr107927 11 53430750 to 53430761 11 - TSS region transcription start site region 107927
Tssr107928 11 53430779 to 53430838 59 - TSS region transcription start site region 107928
Gdf9 11 53431023 to 53437904 6881 + protein coding gene growth differentiation factor 9
Tssr101402 11 53433347 to 53433357 10 + TSS region transcription start site region 101402
Gm30585 11 53452365 to 53454789 2424 - lncRNA gene predicted gene, 30585
D11Mit24 11 53453326 to 53453562 236 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 24
Gm10447 11 53454804 to 53457110 2306 - protein coding gene predicted gene 10447
Cpgi2863 11 53456976 to 53457707 731 CpG island CpG island 2863
Tssr101403 11 53457184 to 53457201 17 + TSS region transcription start site region 101403
Shroom1 11 53457205 to 53467766 10561 + protein coding gene shroom family member 1
Tssr101404 11 53457209 to 53457265 56 + TSS region transcription start site region 101404
Tssr101405 11 53457273 to 53457300 27 + TSS region transcription start site region 101405
Gm12212 11 53462379 to 53463613 1234 - antisense lncRNA gene predicted gene 12212
Cpgi2864 11 53463254 to 53464152 898 CpG island CpG island 2864
Cpgi2865 11 53466356 to 53467091 735 CpG island CpG island 2865
Gm9837 11 53469749 to 53470479 730 - protein coding gene predicted gene 9837
Cpgi2866 11 53470059 to 53470578 519 CpG island CpG island 2866
Sowaha 11 53476578 to 53480195 3617 - protein coding gene sosondowah ankyrin repeat domain family member A
Cpgi2867 11 53478232 to 53480325 2093 CpG island CpG island 2867
Tssr101406 11 53478851 to 53478858 7 + TSS region transcription start site region 101406
Tssr107929 11 53479960 to 53479990 30 - TSS region transcription start site region 107929
Tssr107930 11 53480010 to 53480024 14 - TSS region transcription start site region 107930
Tssr107931 11 53480159 to 53480176 17 - TSS region transcription start site region 107931
Gm9945 11 53480166 to 53481097 931 + protein coding gene predicted gene 9945
Tssr107932 11 53480178 to 53480216 38 - TSS region transcription start site region 107932
Tssr107933 11 53480222 to 53480241 19 - TSS region transcription start site region 107933
Gm19835 11 53483084 to 53487995 4911 - lncRNA gene predicted gene, 19835
Cpgi2868 11 53487318 to 53487593 275 CpG island CpG island 2868
Tssr101407 11 53501158 to 53501159 1 + TSS region transcription start site region 101407
Rpl9-ps3 11 53501184 to 53501759 575 + pseudogene ribosomal protein L9, pseudogene 3
Tssr101408 11 53515314 to 53515316 2 + TSS region transcription start site region 101408
Cpgi2869 11 53519389 to 53520620 1231 CpG island CpG island 2869
Tssr101409 11 53519725 to 53519791 66 + TSS region transcription start site region 101409
Sept8 11 53519736 to 53549603 29867 + protein coding gene septin 8
Tssr101410 11 53519871 to 53519917 46 + TSS region transcription start site region 101410
Tssr101411 11 53519920 to 53519933 13 + TSS region transcription start site region 101411
Tssr101412 11 53519968 to 53519977 9 + TSS region transcription start site region 101412
Cpgi2870 11 53539158 to 53539419 261 CpG island CpG island 2870
Tssr101413 11 53543712 to 53543736 24 + TSS region transcription start site region 101413
Cycl 11 53548198 to 53548497 299 - pseudogene cyclin-like
Tssr101414 11 53548743 to 53548748 5 + TSS region transcription start site region 101414
A430108G06Rik 11 53564688 to 53567313 2625 - lncRNA gene RIKEN cDNA A430108G06 gene
Cpgi2871 11 53567144 to 53568013 869 CpG island CpG island 2871
Tssr101415 11 53567361 to 53567428 67 + TSS region transcription start site region 101415
Kif3a 11 53567379 to 53601967 34588 + protein coding gene kinesin family member 3A
Tssr101416 11 53582220 to 53582226 6 + TSS region transcription start site region 101416
Tssr101417 11 53583894 to 53583906 12 + TSS region transcription start site region 101417
Tssr101418 11 53583920 to 53583934 14 + TSS region transcription start site region 101418
Tssr101419 11 53583962 to 53583973 11 + TSS region transcription start site region 101419
Tssr101420 11 53584373 to 53584393 20 + TSS region transcription start site region 101420
Tssr101421 11 53586831 to 53586843 12 + TSS region transcription start site region 101421
Tssr107934 11 53586905 to 53586925 20 - TSS region transcription start site region 107934
Cpgi2872 11 53590499 to 53590685 186 CpG island CpG island 2872
Il4 11 53612460 to 53618665 6205 - protein coding gene interleukin 4
Lbw8 11 53612460 to 53618665 6205 QTL lupus NZB x NZW 8
Tssr107935 11 53617275 to 53617295 20 - TSS region transcription start site region 107935
Tssr107936 11 53617333 to 53617366 33 - TSS region transcription start site region 107936
D11Mit111 11 53618045 to 53618173 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 111
Tssr107937 11 53618659 to 53618668 9 - TSS region transcription start site region 107937
Il13 11 53631324 to 53634702 3378 - protein coding gene interleukin 13
Tssr107938 11 53631699 to 53631710 11 - TSS region transcription start site region 107938
Tssr101422 11 53631823 to 53631856 33 + TSS region transcription start site region 101422
Tssr107939 11 53631865 to 53631885 20 - TSS region transcription start site region 107939
Tssr101423 11 53631877 to 53631906 29 + TSS region transcription start site region 101423
Tssr101424 11 53631941 to 53631954 13 + TSS region transcription start site region 101424
Tssr101425 11 53631980 to 53631989 9 + TSS region transcription start site region 101425
Tssr101426 11 53632040 to 53632056 16 + TSS region transcription start site region 101426
Tssr101427 11 53632067 to 53632085 18 + TSS region transcription start site region 101427
Tssr107940 11 53632110 to 53632126 16 - TSS region transcription start site region 107940
Tssr107941 11 53632141 to 53632168 27 - TSS region transcription start site region 107941
Tssr107942 11 53632571 to 53632590 19 - TSS region transcription start site region 107942
Tssr107943 11 53633208 to 53633218 10 - TSS region transcription start site region 107943
Tssr107944 11 53634698 to 53634703 5 - TSS region transcription start site region 107944
Cpgi2873 11 53635737 to 53636642 905 CpG island CpG island 2873
Rps2-ps4 11 53645744 to 53646376 632 + pseudogene ribosomal protein S2, pseudogene 4
Rad50 11 53649519 to 53707319 57800 - protein coding gene RAD50 double strand break repair protein
Tssr107945 11 53656887 to 53656907 20 - TSS region transcription start site region 107945
Tssr107946 11 53675981 to 53676010 29 - TSS region transcription start site region 107946
Tssr107947 11 53683298 to 53683337 39 - TSS region transcription start site region 107947
Gm22275 11 53701179 to 53701488 309 + unclassified non-coding RNA gene predicted gene, 22275
Tssr107948 11 53705684 to 53705725 41 - TSS region transcription start site region 107948
Cpgi2874 11 53706702 to 53707645 943 CpG island CpG island 2874
Tssr101428 11 53706783 to 53706814 31 + TSS region transcription start site region 101428
Tssr101429 11 53706817 to 53706829 12 + TSS region transcription start site region 101429
Tssr107949 11 53707269 to 53707332 63 - TSS region transcription start site region 107949
Tssr101430 11 53707413 to 53707433 20 + TSS region transcription start site region 101430
Tssr101431 11 53707752 to 53707762 10 + TSS region transcription start site region 101431
Tssr107950 11 53713081 to 53713086 5 - TSS region transcription start site region 107950
Tssr101432 11 53719444 to 53719460 16 + TSS region transcription start site region 101432
Tssr101433 11 53719960 to 53719974 14 + TSS region transcription start site region 101433
Tssr101434 11 53719990 to 53720004 14 + TSS region transcription start site region 101434
Tssr101435 11 53720010 to 53720027 17 + TSS region transcription start site region 101435
Tssr101436 11 53720081 to 53720088 7 + TSS region transcription start site region 101436
Tssr101437 11 53720790 to 53720795 5 + TSS region transcription start site region 101437
Il5 11 53720794 to 53725103 4309 + protein coding gene interleukin 5
Tssr101438 11 53721903 to 53721929 26 + TSS region transcription start site region 101438
Tria1 11 53722738 to 53723028 290 QTL T cell receptor induced activation 1
D11Nds9 11 53722738 to 53723028 290 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 9
Tssr101439 11 53723732 to 53723747 15 + TSS region transcription start site region 101439
Tssr101440 11 53723768 to 53723790 22 + TSS region transcription start site region 101440
Tssr101441 11 53723938 to 53723955 17 + TSS region transcription start site region 101441
Gm12214 11 53723953 to 53724618 665 - antisense lncRNA gene predicted gene 12214
Tssr101442 11 53723995 to 53724024 29 + TSS region transcription start site region 101442
Tssr101443 11 53724099 to 53724111 12 + TSS region transcription start site region 101443
Tssr107951 11 53724348 to 53724357 9 - TSS region transcription start site region 107951
Tssr107952 11 53724390 to 53724409 19 - TSS region transcription start site region 107952
Tssr101444 11 53724497 to 53724508 11 + TSS region transcription start site region 101444
Tssr107953 11 53724509 to 53724528 19 - TSS region transcription start site region 107953
Tssr101445 11 53724585 to 53724599 14 + TSS region transcription start site region 101445
Tssr101446 11 53724618 to 53724639 21 + TSS region transcription start site region 101446
Tssr101447 11 53724654 to 53724655 1 + TSS region transcription start site region 101447
Gm12213 11 53733579 to 53733931 352 + pseudogene predicted gene 12213
Cpgi2875 11 53735572 to 53736040 468 CpG island CpG island 2875
Tssr101448 11 53752968 to 53752973 5 + TSS region transcription start site region 101448
Cpgi2876 11 53762935 to 53764195 1260 CpG island CpG island 2876
Mir7671 11 53763597 to 53763654 57 - miRNA gene microRNA 7671
Tssr107954 11 53763681 to 53763693 12 - TSS region transcription start site region 107954
Tssr101449 11 53763820 to 53763856 36 + TSS region transcription start site region 101449
Tssr107955 11 53763906 to 53763916 10 - TSS region transcription start site region 107955
Tssr107956 11 53763960 to 53763974 14 - TSS region transcription start site region 107956
Cpgi2877 11 53769637 to 53770898 1261 CpG island CpG island 2877
Tssr107957 11 53769747 to 53769780 33 - TSS region transcription start site region 107957
Irf1 11 53770014 to 53778374 8360 + protein coding gene interferon regulatory factor 1
Del(11Irf1-D11Mit23)1Rub 11 53770014 to 54236047 466033 cytogenetic marker deletion, Chr 11, Edward M Rubin 1
Tssr101450 11 53770042 to 53770057 15 + TSS region transcription start site region 101450
Tssr101451 11 53770458 to 53770505 47 + TSS region transcription start site region 101451
Tssr101452 11 53770806 to 53770823 17 + TSS region transcription start site region 101452
Tssr101453 11 53770977 to 53770980 3 + TSS region transcription start site region 101453
Tssr101454 11 53771267 to 53771277 10 + TSS region transcription start site region 101454
Tssr101455 11 53771372 to 53771388 16 + TSS region transcription start site region 101455
Tssr101456 11 53771710 to 53771722 12 + TSS region transcription start site region 101456
Tssr101457 11 53771757 to 53771768 11 + TSS region transcription start site region 101457
Tssr101458 11 53772070 to 53772087 17 + TSS region transcription start site region 101458
Tssr101459 11 53772107 to 53772127 20 + TSS region transcription start site region 101459
Gm17334 11 53772281 to 53773187 906 - protein coding gene predicted gene, 17334
Tssr101460 11 53785488 to 53785491 3 + TSS region transcription start site region 101460
Gm12216 11 53785489 to 53859256 73767 - protein coding gene predicted gene 12216
Tssr101461 11 53786817 to 53786821 4 + TSS region transcription start site region 101461
Tssr101462 11 53805005 to 53805008 3 + TSS region transcription start site region 101462
Tssr107958 11 53805149 to 53805159 10 - TSS region transcription start site region 107958
Tssr107959 11 53818732 to 53818740 8 - TSS region transcription start site region 107959
Tssr107960 11 53837648 to 53837657 9 - TSS region transcription start site region 107960
Gm30785 11 53840170 to 53847711 7541 + lncRNA gene predicted gene, 30785
Tssr101463 11 53856959 to 53856985 26 + TSS region transcription start site region 101463
Cpgi2878 11 53858877 to 53859579 702 CpG island CpG island 2878
Tssr107961 11 53859187 to 53859241 54 - TSS region transcription start site region 107961
Slc22a5 11 53864542 to 53891660 27118 - protein coding gene solute carrier family 22 (organic cation transporter), member 5
Cpgi2879 11 53891049 to 53892124 1075 CpG island CpG island 2879
Tssr107962 11 53891612 to 53891623 11 - TSS region transcription start site region 107962
Tssr107963 11 53891638 to 53891656 18 - TSS region transcription start site region 107963
Tssr107964 11 53891668 to 53891708 40 - TSS region transcription start site region 107964
Gm12217 11 53902190 to 53903568 1378 + pseudogene predicted gene 12217
Gm12218 11 53902757 to 53903155 398 - pseudogene predicted gene 12218
Gm12220 11 53929305 to 53929476 171 - pseudogene predicted gene 12220
Slc22a21 11 53949965 to 53980332 30367 - protein coding gene solute carrier family 22 (organic cation transporter), member 21
Gm12219 11 53967063 to 53967505 442 - pseudogene predicted gene 12219
Cpgi2880 11 53979421 to 53980461 1040 CpG island CpG island 2880
Tssr107965 11 53979887 to 53979940 53 - TSS region transcription start site region 107965
Tssr107966 11 53979949 to 53979968 19 - TSS region transcription start site region 107966
Tssr101464 11 53980025 to 53980036 11 + TSS region transcription start site region 101464
Tssr101465 11 53980044 to 53980049 5 + TSS region transcription start site region 101465
Gm30927 11 53980225 to 53985970 5745 + lncRNA gene predicted gene, 30927
Tssr107967 11 53980271 to 53980283 12 - TSS region transcription start site region 107967
Tssr107968 11 53980296 to 53980350 54 - TSS region transcription start site region 107968
Tssr107969 11 53980354 to 53980384 30 - TSS region transcription start site region 107969
Slc22a4 11 53983123 to 54028090 44967 - protein coding gene solute carrier family 22 (organic cation transporter), member 4
Cpgi2881 11 54007782 to 54007954 172 CpG island CpG island 2881
Cpgi2882 11 54027519 to 54028867 1348 CpG island CpG island 2882
Tssr107970 11 54027739 to 54027746 7 - TSS region transcription start site region 107970
Tssr107971 11 54028096 to 54028111 15 - TSS region transcription start site region 107971
Tssr107972 11 54028137 to 54028148 11 - TSS region transcription start site region 107972
Tssr107973 11 54028611 to 54028630 19 - TSS region transcription start site region 107973
Tssr107974 11 54028711 to 54028721 10 - TSS region transcription start site region 107974
Tssr107975 11 54028789 to 54028803 14 - TSS region transcription start site region 107975