Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:53349197-53469267

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2861 11 53350177 to 53351851 1674 CpG island CpG island 2861
Tssr101391 11 53350734 to 53350782 48 + TSS region transcription start site region 101391
Tssr101392 11 53350783 to 53350800 17 + TSS region transcription start site region 101392
Aff4 11 53350833 to 53421830 70997 + protein coding gene AF4/FMR2 family, member 4
Tssr101393 11 53350876 to 53350890 14 + TSS region transcription start site region 101393
Tssr3495 11 53350910 to 53350920 10 + TSS region transcription start site region 3495
Tssr3496 11 53350924 to 53350931 7 + TSS region transcription start site region 3496
Tssr3497 11 53350975 to 53350984 9 + TSS region transcription start site region 3497
Tssr101394 11 53350992 to 53350999 7 + TSS region transcription start site region 101394
Tssr101395 11 53351031 to 53351046 15 + TSS region transcription start site region 101395
Tssr101396 11 53351054 to 53351065 11 + TSS region transcription start site region 101396
Tssr3498 11 53351077 to 53351085 8 + TSS region transcription start site region 3498
Tssr101397 11 53351850 to 53351890 40 + TSS region transcription start site region 101397
Tssr107918 11 53351986 to 53351993 7 - TSS region transcription start site region 107918
Tssr107919 11 53351994 to 53352006 12 - TSS region transcription start site region 107919
Tssr101398 11 53352062 to 53352097 35 + TSS region transcription start site region 101398
Gm32048 11 53365232 to 53367449 2217 + pseudogene predicted gene, 32048
Tssr101399 11 53370939 to 53370945 6 + TSS region transcription start site region 101399
Tssr101400 11 53372475 to 53372501 26 + TSS region transcription start site region 101400
Gm25930 11 53390402 to 53390508 106 + snRNA gene predicted gene, 25930
D11Ertd142e 11 53404961 to 53405196 235 DNA segment DNA segment, Chr 11, ERATO Doi 142, expressed
Mir6920 11 53409197 to 53409267 70 + miRNA gene microRNA 6920
Leap2 11 53422181 to 53423136 955 - protein coding gene liver-expressed antimicrobial peptide 2
Tssr107920 11 53423123 to 53423135 12 - TSS region transcription start site region 107920
Uqcrq 11 53427922 to 53430831 2909 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit VII
Cpgi2862 11 53430224 to 53431519 1295 CpG island CpG island 2862
Tssr107921 11 53430380 to 53430389 9 - TSS region transcription start site region 107921
Tssr107922 11 53430392 to 53430405 13 - TSS region transcription start site region 107922
Tssr107923 11 53430417 to 53430433 16 - TSS region transcription start site region 107923
Tssr107924 11 53430445 to 53430464 19 - TSS region transcription start site region 107924
Tssr101401 11 53430453 to 53430464 11 + TSS region transcription start site region 101401
Tssr107925 11 53430468 to 53430480 12 - TSS region transcription start site region 107925
Tssr107926 11 53430497 to 53430507 10 - TSS region transcription start site region 107926
Tssr107927 11 53430750 to 53430761 11 - TSS region transcription start site region 107927
Tssr107928 11 53430779 to 53430838 59 - TSS region transcription start site region 107928
Gdf9 11 53431023 to 53437904 6881 + protein coding gene growth differentiation factor 9
Tssr101402 11 53433347 to 53433357 10 + TSS region transcription start site region 101402
Gm30585 11 53452365 to 53454789 2424 - lncRNA gene predicted gene, 30585
D11Mit24 11 53453326 to 53453562 236 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 24
Gm10447 11 53454804 to 53457110 2306 - protein coding gene predicted gene 10447
Cpgi2863 11 53456976 to 53457707 731 CpG island CpG island 2863
Tssr101403 11 53457184 to 53457201 17 + TSS region transcription start site region 101403
Shroom1 11 53457205 to 53467766 10561 + protein coding gene shroom family member 1
Tssr101404 11 53457209 to 53457265 56 + TSS region transcription start site region 101404
Tssr101405 11 53457273 to 53457300 27 + TSS region transcription start site region 101405
Gm12212 11 53462379 to 53463613 1234 - antisense lncRNA gene predicted gene 12212
Cpgi2864 11 53463254 to 53464152 898 CpG island CpG island 2864
Cpgi2865 11 53466356 to 53467091 735 CpG island CpG island 2865