Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:53329968-53709977

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zcchc10 11 53324689 to 53333301 8612 + protein coding gene zinc finger, CCHC domain containing 10
Tssr101383 11 53330574 to 53330609 35 + TSS region transcription start site region 101383
Tssr101384 11 53330612 to 53330619 7 + TSS region transcription start site region 101384
Tssr101385 11 53332155 to 53332171 16 + TSS region transcription start site region 101385
Tssr101386 11 53332186 to 53332207 21 + TSS region transcription start site region 101386
Tssr101387 11 53332383 to 53332394 11 + TSS region transcription start site region 101387
Tssr101388 11 53332467 to 53332481 14 + TSS region transcription start site region 101388
Tssr101389 11 53332485 to 53332515 30 + TSS region transcription start site region 101389
Tssr101390 11 53332529 to 53332541 12 + TSS region transcription start site region 101390
Gm11188 11 53345290 to 53345677 387 - pseudogene predicted gene 11188
Cpgi2861 11 53350177 to 53351851 1674 CpG island CpG island 2861
Tssr101391 11 53350734 to 53350782 48 + TSS region transcription start site region 101391
Tssr101392 11 53350783 to 53350800 17 + TSS region transcription start site region 101392
Aff4 11 53350833 to 53421830 70997 + protein coding gene AF4/FMR2 family, member 4
Tssr101393 11 53350876 to 53350890 14 + TSS region transcription start site region 101393
Tssr3495 11 53350910 to 53350920 10 + TSS region transcription start site region 3495
Tssr3496 11 53350924 to 53350931 7 + TSS region transcription start site region 3496
Tssr3497 11 53350975 to 53350984 9 + TSS region transcription start site region 3497
Tssr101394 11 53350992 to 53350999 7 + TSS region transcription start site region 101394
Tssr101395 11 53351031 to 53351046 15 + TSS region transcription start site region 101395
Tssr101396 11 53351054 to 53351065 11 + TSS region transcription start site region 101396
Tssr3498 11 53351077 to 53351085 8 + TSS region transcription start site region 3498
Tssr101397 11 53351850 to 53351890 40 + TSS region transcription start site region 101397
Tssr107918 11 53351986 to 53351993 7 - TSS region transcription start site region 107918
Tssr107919 11 53351994 to 53352006 12 - TSS region transcription start site region 107919
Tssr101398 11 53352062 to 53352097 35 + TSS region transcription start site region 101398
Gm32048 11 53365232 to 53367449 2217 + pseudogene predicted gene, 32048
Tssr101399 11 53370939 to 53370945 6 + TSS region transcription start site region 101399
Tssr101400 11 53372475 to 53372501 26 + TSS region transcription start site region 101400
Gm25930 11 53390402 to 53390508 106 + snRNA gene predicted gene, 25930
D11Ertd142e 11 53404961 to 53405196 235 DNA segment DNA segment, Chr 11, ERATO Doi 142, expressed
Mir6920 11 53409197 to 53409267 70 + miRNA gene microRNA 6920
Leap2 11 53422181 to 53423136 955 - protein coding gene liver-expressed antimicrobial peptide 2
Tssr107920 11 53423123 to 53423135 12 - TSS region transcription start site region 107920
Uqcrq 11 53427922 to 53430831 2909 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit VII
Cpgi2862 11 53430224 to 53431519 1295 CpG island CpG island 2862
Tssr107921 11 53430380 to 53430389 9 - TSS region transcription start site region 107921
Tssr107922 11 53430392 to 53430405 13 - TSS region transcription start site region 107922
Tssr107923 11 53430417 to 53430433 16 - TSS region transcription start site region 107923
Tssr107924 11 53430445 to 53430464 19 - TSS region transcription start site region 107924
Tssr101401 11 53430453 to 53430464 11 + TSS region transcription start site region 101401
Tssr107925 11 53430468 to 53430480 12 - TSS region transcription start site region 107925
Tssr107926 11 53430497 to 53430507 10 - TSS region transcription start site region 107926
Tssr107927 11 53430750 to 53430761 11 - TSS region transcription start site region 107927
Tssr107928 11 53430779 to 53430838 59 - TSS region transcription start site region 107928
Gdf9 11 53431023 to 53437904 6881 + protein coding gene growth differentiation factor 9
Tssr101402 11 53433347 to 53433357 10 + TSS region transcription start site region 101402
Gm30585 11 53452365 to 53454789 2424 - lncRNA gene predicted gene, 30585
D11Mit24 11 53453326 to 53453562 236 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 24
Gm10447 11 53454804 to 53457110 2306 - protein coding gene predicted gene 10447
Cpgi2863 11 53456976 to 53457707 731 CpG island CpG island 2863
Tssr101403 11 53457184 to 53457201 17 + TSS region transcription start site region 101403
Shroom1 11 53457205 to 53467766 10561 + protein coding gene shroom family member 1
Tssr101404 11 53457209 to 53457265 56 + TSS region transcription start site region 101404
Tssr101405 11 53457273 to 53457300 27 + TSS region transcription start site region 101405
Gm12212 11 53462379 to 53463613 1234 - antisense lncRNA gene predicted gene 12212
Cpgi2864 11 53463254 to 53464152 898 CpG island CpG island 2864
Cpgi2865 11 53466356 to 53467091 735 CpG island CpG island 2865
Gm9837 11 53469749 to 53470479 730 - protein coding gene predicted gene 9837
Cpgi2866 11 53470059 to 53470578 519 CpG island CpG island 2866
Sowaha 11 53476578 to 53480195 3617 - protein coding gene sosondowah ankyrin repeat domain family member A
Cpgi2867 11 53478232 to 53480325 2093 CpG island CpG island 2867
Tssr101406 11 53478851 to 53478858 7 + TSS region transcription start site region 101406
Tssr107929 11 53479960 to 53479990 30 - TSS region transcription start site region 107929
Tssr107930 11 53480010 to 53480024 14 - TSS region transcription start site region 107930
Tssr107931 11 53480159 to 53480176 17 - TSS region transcription start site region 107931
Gm9945 11 53480166 to 53481097 931 + protein coding gene predicted gene 9945
Tssr107932 11 53480178 to 53480216 38 - TSS region transcription start site region 107932
Tssr107933 11 53480222 to 53480241 19 - TSS region transcription start site region 107933
Gm19835 11 53483084 to 53487995 4911 - lncRNA gene predicted gene, 19835
Cpgi2868 11 53487318 to 53487593 275 CpG island CpG island 2868
Tssr101407 11 53501158 to 53501159 1 + TSS region transcription start site region 101407
Rpl9-ps3 11 53501184 to 53501759 575 + pseudogene ribosomal protein L9, pseudogene 3
Tssr101408 11 53515314 to 53515316 2 + TSS region transcription start site region 101408
Cpgi2869 11 53519389 to 53520620 1231 CpG island CpG island 2869
Tssr101409 11 53519725 to 53519791 66 + TSS region transcription start site region 101409
Sept8 11 53519736 to 53549603 29867 + protein coding gene septin 8
Tssr101410 11 53519871 to 53519917 46 + TSS region transcription start site region 101410
Tssr101411 11 53519920 to 53519933 13 + TSS region transcription start site region 101411
Tssr101412 11 53519968 to 53519977 9 + TSS region transcription start site region 101412
Cpgi2870 11 53539158 to 53539419 261 CpG island CpG island 2870
Tssr101413 11 53543712 to 53543736 24 + TSS region transcription start site region 101413
Cycl 11 53548198 to 53548497 299 - pseudogene cyclin-like
Tssr101414 11 53548743 to 53548748 5 + TSS region transcription start site region 101414
A430108G06Rik 11 53564688 to 53567313 2625 - lncRNA gene RIKEN cDNA A430108G06 gene
Cpgi2871 11 53567144 to 53568013 869 CpG island CpG island 2871
Tssr101415 11 53567361 to 53567428 67 + TSS region transcription start site region 101415
Kif3a 11 53567379 to 53601967 34588 + protein coding gene kinesin family member 3A
Tssr101416 11 53582220 to 53582226 6 + TSS region transcription start site region 101416
Tssr101417 11 53583894 to 53583906 12 + TSS region transcription start site region 101417
Tssr101418 11 53583920 to 53583934 14 + TSS region transcription start site region 101418
Tssr101419 11 53583962 to 53583973 11 + TSS region transcription start site region 101419
Tssr101420 11 53584373 to 53584393 20 + TSS region transcription start site region 101420
Tssr101421 11 53586831 to 53586843 12 + TSS region transcription start site region 101421
Tssr107934 11 53586905 to 53586925 20 - TSS region transcription start site region 107934
Cpgi2872 11 53590499 to 53590685 186 CpG island CpG island 2872
Lbw8 11 53612460 to 53618665 6205 QTL lupus NZB x NZW 8
Il4 11 53612460 to 53618665 6205 - protein coding gene interleukin 4
Tssr107935 11 53617275 to 53617295 20 - TSS region transcription start site region 107935
Tssr107936 11 53617333 to 53617366 33 - TSS region transcription start site region 107936
D11Mit111 11 53618045 to 53618173 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 111
Tssr107937 11 53618659 to 53618668 9 - TSS region transcription start site region 107937
Il13 11 53631324 to 53634702 3378 - protein coding gene interleukin 13
Tssr107938 11 53631699 to 53631710 11 - TSS region transcription start site region 107938
Tssr101422 11 53631823 to 53631856 33 + TSS region transcription start site region 101422
Tssr107939 11 53631865 to 53631885 20 - TSS region transcription start site region 107939
Tssr101423 11 53631877 to 53631906 29 + TSS region transcription start site region 101423
Tssr101424 11 53631941 to 53631954 13 + TSS region transcription start site region 101424
Tssr101425 11 53631980 to 53631989 9 + TSS region transcription start site region 101425
Tssr101426 11 53632040 to 53632056 16 + TSS region transcription start site region 101426
Tssr101427 11 53632067 to 53632085 18 + TSS region transcription start site region 101427
Tssr107940 11 53632110 to 53632126 16 - TSS region transcription start site region 107940
Tssr107941 11 53632141 to 53632168 27 - TSS region transcription start site region 107941
Tssr107942 11 53632571 to 53632590 19 - TSS region transcription start site region 107942
Tssr107943 11 53633208 to 53633218 10 - TSS region transcription start site region 107943
Tssr107944 11 53634698 to 53634703 5 - TSS region transcription start site region 107944
Cpgi2873 11 53635737 to 53636642 905 CpG island CpG island 2873
Rps2-ps4 11 53645744 to 53646376 632 + pseudogene ribosomal protein S2, pseudogene 4
Rad50 11 53649519 to 53707319 57800 - protein coding gene RAD50 double strand break repair protein
Tssr107945 11 53656887 to 53656907 20 - TSS region transcription start site region 107945
Tssr107946 11 53675981 to 53676010 29 - TSS region transcription start site region 107946
Tssr107947 11 53683298 to 53683337 39 - TSS region transcription start site region 107947
Gm22275 11 53701179 to 53701488 309 + unclassified non-coding RNA gene predicted gene, 22275
Tssr107948 11 53705684 to 53705725 41 - TSS region transcription start site region 107948
Cpgi2874 11 53706702 to 53707645 943 CpG island CpG island 2874
Tssr101428 11 53706783 to 53706814 31 + TSS region transcription start site region 101428
Tssr101429 11 53706817 to 53706829 12 + TSS region transcription start site region 101429
Tssr107949 11 53707269 to 53707332 63 - TSS region transcription start site region 107949
Tssr101430 11 53707413 to 53707433 20 + TSS region transcription start site region 101430
Tssr101431 11 53707752 to 53707762 10 + TSS region transcription start site region 101431