Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:52304674-54344704

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380 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae44b 11 40059901 to 54203622 14143721 QTL experimental allergic encephalomyelitis susceptibility 44b
Vmbic10 11 42881799 to 54190238 11308439 QTL ventral midbrain iron content 10
Tcpm1 11 51561652 to 53725103 2163451 QTL T cell phenotype modifier 1
Tssr107889 11 52306613 to 52306624 11 - TSS region transcription start site region 107889
Tssr107890 11 52306711 to 52306723 12 - TSS region transcription start site region 107890
Tssr101338 11 52306763 to 52306776 13 + TSS region transcription start site region 101338
Tssr101339 11 52306782 to 52306793 11 + TSS region transcription start site region 101339
Tssr101340 11 52306972 to 52306988 16 + TSS region transcription start site region 101340
Gm30217 11 52307118 to 52318720 11602 + lncRNA gene predicted gene, 30217
Tssr101341 11 52307626 to 52307639 13 + TSS region transcription start site region 101341
Tssr101342 11 52307774 to 52307792 18 + TSS region transcription start site region 101342
Tssr101343 11 52307797 to 52307806 9 + TSS region transcription start site region 101343
Tssr101344 11 52307807 to 52307822 15 + TSS region transcription start site region 101344
Tssr101345 11 52307860 to 52307863 3 + TSS region transcription start site region 101345
Tssr101346 11 52307926 to 52307937 11 + TSS region transcription start site region 101346
Tssr101347 11 52309507 to 52309533 26 + TSS region transcription start site region 101347
Tssr101348 11 52309663 to 52309672 9 + TSS region transcription start site region 101348
Tssr101349 11 52310989 to 52310998 9 + TSS region transcription start site region 101349
Tssr101350 11 52311003 to 52311022 19 + TSS region transcription start site region 101350
Tssr101351 11 52311025 to 52311048 23 + TSS region transcription start site region 101351
Tssr101352 11 52311165 to 52311194 29 + TSS region transcription start site region 101352
Cpgi2854 11 52314166 to 52314444 278 CpG island CpG island 2854
Tssr101353 11 52318759 to 52318770 11 + TSS region transcription start site region 101353
Tssr107891 11 52332557 to 52332568 11 - TSS region transcription start site region 107891
Tssr107892 11 52336079 to 52336094 15 - TSS region transcription start site region 107892
Tssr101354 11 52336258 to 52336267 9 + TSS region transcription start site region 101354
Tssr101355 11 52339763 to 52339772 9 + TSS region transcription start site region 101355
D11Mit87 11 52343766 to 52343904 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 87
Cpgi2855 11 52360329 to 52361961 1632 CpG island CpG island 2855
Tssr101356 11 52360824 to 52360935 111 + TSS region transcription start site region 101356
Vdac1 11 52360862 to 52389397 28535 + protein coding gene voltage-dependent anion channel 1
Tssr107893 11 52360939 to 52360955 16 - TSS region transcription start site region 107893
Tssr107894 11 52360963 to 52361013 50 - TSS region transcription start site region 107894
Tssr101357 11 52361049 to 52361064 15 + TSS region transcription start site region 101357
Tssr101358 11 52361069 to 52361126 57 + TSS region transcription start site region 101358
Tssr101359 11 52374294 to 52374320 26 + TSS region transcription start site region 101359
Tssr101360 11 52389139 to 52389146 7 + TSS region transcription start site region 101360
Tssr107895 11 52390049 to 52390082 33 - TSS region transcription start site region 107895
Cpgi2856 11 52396267 to 52397167 900 CpG island CpG island 2856
Tssr101361 11 52396390 to 52396395 5 + TSS region transcription start site region 101361
Tssr101362 11 52396414 to 52396449 35 + TSS region transcription start site region 101362
9530068E07Rik 11 52396428 to 52408723 12295 + protein coding gene RIKEN cDNA 9530068E07 gene
Tssr101363 11 52396451 to 52396473 22 + TSS region transcription start site region 101363
Tssr101364 11 52396482 to 52396494 12 + TSS region transcription start site region 101364
Tssr101365 11 52396540 to 52396543 3 + TSS region transcription start site region 101365
Tssr101366 11 52396585 to 52396601 16 + TSS region transcription start site region 101366
Tssr101367 11 52402911 to 52402932 21 + TSS region transcription start site region 101367
Tssr107896 11 52403368 to 52403390 22 - TSS region transcription start site region 107896
Tssr101368 11 52403441 to 52403481 40 + TSS region transcription start site region 101368
Tssr101369 11 52405255 to 52405262 7 + TSS region transcription start site region 101369
Gm12208 11 52405316 to 52405478 162 + pseudogene predicted gene 12208
Tssr101370 11 52407171 to 52407185 14 + TSS region transcription start site region 101370
Tssr101371 11 52407402 to 52407454 52 + TSS region transcription start site region 101371
Gm12209 11 52478508 to 52479103 595 - pseudogene predicted gene 12209
Cpgi2857 11 52480784 to 52481066 282 CpG island CpG island 2857
Tssr107897 11 52480916 to 52480923 7 - TSS region transcription start site region 107897
Gm12210 11 52487158 to 52487310 152 - pseudogene predicted gene 12210
Tssr101372 11 52569218 to 52569219 1 + TSS region transcription start site region 101372
Gm30366 11 52579322 to 52663853 84531 + lncRNA gene predicted gene, 30366
Gm39823 11 52705779 to 52707045 1266 + lncRNA gene predicted gene, 39823
Cpgi2858 11 52764249 to 52766205 1956 CpG island CpG island 2858
Fstl4 11 52764634 to 53188538 423904 + protein coding gene follistatin-like 4
Tssr101373 11 52764651 to 52764693 42 + TSS region transcription start site region 101373
Tssr101374 11 52816367 to 52816370 3 + TSS region transcription start site region 101374
Tssr101375 11 52820214 to 52820216 2 + TSS region transcription start site region 101375
Tssr101376 11 52860424 to 52860426 2 + TSS region transcription start site region 101376
Tssr107898 11 52997396 to 52997418 22 - TSS region transcription start site region 107898
Gm39824 11 53036474 to 53042619 6145 - lncRNA gene predicted gene, 39824
D11Mit311 11 53077240 to 53077356 116 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 311
Gm11186 11 53111451 to 53120056 8605 - antisense lncRNA gene predicted gene 11186
D11Mit273 11 53143826 to 53143949 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 273
D11Mit141 11 53143833 to 53143981 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 141
Tssr101377 11 53187606 to 53187611 5 + TSS region transcription start site region 101377
Gm11189 11 53200684 to 53201058 374 + pseudogene predicted gene 11189
D11Mit240 11 53228937 to 53229086 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 240
Tssr107899 11 53255631 to 53255637 6 - TSS region transcription start site region 107899
Tssr107900 11 53257707 to 53257715 8 - TSS region transcription start site region 107900
Tssr107901 11 53257716 to 53257741 25 - TSS region transcription start site region 107901
Tssr107902 11 53257742 to 53257758 16 - TSS region transcription start site region 107902
Hspa4 11 53259814 to 53300457 40643 - protein coding gene heat shock protein 4
Tssr107903 11 53265999 to 53266035 36 - TSS region transcription start site region 107903
Tssr107904 11 53266041 to 53266054 13 - TSS region transcription start site region 107904
Tssr107905 11 53266988 to 53267016 28 - TSS region transcription start site region 107905
Tssr101378 11 53267045 to 53267065 20 + TSS region transcription start site region 101378
Tssr107906 11 53269776 to 53269815 39 - TSS region transcription start site region 107906
Tssr107907 11 53271075 to 53271088 13 - TSS region transcription start site region 107907
Cpgi2859 11 53299593 to 53301059 1466 CpG island CpG island 2859
Tssr101379 11 53299855 to 53299872 17 + TSS region transcription start site region 101379
Tssr101380 11 53299884 to 53299895 11 + TSS region transcription start site region 101380
Tssr107908 11 53300177 to 53300179 2 - TSS region transcription start site region 107908
Tssr107909 11 53300187 to 53300198 11 - TSS region transcription start site region 107909
Tssr107910 11 53300199 to 53300221 22 - TSS region transcription start site region 107910
Tssr107911 11 53300332 to 53300341 9 - TSS region transcription start site region 107911
Tssr107912 11 53300373 to 53300515 142 - TSS region transcription start site region 107912
Tssr107913 11 53300530 to 53300540 10 - TSS region transcription start site region 107913
Tssr107914 11 53300686 to 53300704 18 - TSS region transcription start site region 107914
Tssr101381 11 53300806 to 53300832 26 + TSS region transcription start site region 101381
Gm30525 11 53302627 to 53308551 5924 - lncRNA gene predicted gene, 30525
Tssr107915 11 53307628 to 53307640 12 - TSS region transcription start site region 107915
Tssr107916 11 53307654 to 53307658 4 - TSS region transcription start site region 107916
Tssr3494 11 53315059 to 53315068 9 + TSS region transcription start site region 3494
Tssr107917 11 53324590 to 53324612 22 - TSS region transcription start site region 107917
Cpgi2860 11 53324591 to 53324928 337 CpG island CpG island 2860
Tssr101382 11 53324674 to 53324704 30 + TSS region transcription start site region 101382
Zcchc10 11 53324689 to 53333301 8612 + protein coding gene zinc finger, CCHC domain containing 10
Tssr101383 11 53330574 to 53330609 35 + TSS region transcription start site region 101383
Tssr101384 11 53330612 to 53330619 7 + TSS region transcription start site region 101384
Tssr101385 11 53332155 to 53332171 16 + TSS region transcription start site region 101385
Tssr101386 11 53332186 to 53332207 21 + TSS region transcription start site region 101386
Tssr101387 11 53332383 to 53332394 11 + TSS region transcription start site region 101387
Tssr101388 11 53332467 to 53332481 14 + TSS region transcription start site region 101388
Tssr101389 11 53332485 to 53332515 30 + TSS region transcription start site region 101389
Tssr101390 11 53332529 to 53332541 12 + TSS region transcription start site region 101390
Gm11188 11 53345290 to 53345677 387 - pseudogene predicted gene 11188
Cpgi2861 11 53350177 to 53351851 1674 CpG island CpG island 2861
Tssr101391 11 53350734 to 53350782 48 + TSS region transcription start site region 101391
Tssr101392 11 53350783 to 53350800 17 + TSS region transcription start site region 101392
Aff4 11 53350833 to 53421830 70997 + protein coding gene AF4/FMR2 family, member 4
Tssr101393 11 53350876 to 53350890 14 + TSS region transcription start site region 101393
Tssr3495 11 53350910 to 53350920 10 + TSS region transcription start site region 3495
Tssr3496 11 53350924 to 53350931 7 + TSS region transcription start site region 3496
Tssr3497 11 53350975 to 53350984 9 + TSS region transcription start site region 3497
Tssr101394 11 53350992 to 53350999 7 + TSS region transcription start site region 101394
Tssr101395 11 53351031 to 53351046 15 + TSS region transcription start site region 101395
Tssr101396 11 53351054 to 53351065 11 + TSS region transcription start site region 101396
Tssr3498 11 53351077 to 53351085 8 + TSS region transcription start site region 3498
Tssr101397 11 53351850 to 53351890 40 + TSS region transcription start site region 101397
Tssr107918 11 53351986 to 53351993 7 - TSS region transcription start site region 107918
Tssr107919 11 53351994 to 53352006 12 - TSS region transcription start site region 107919
Tssr101398 11 53352062 to 53352097 35 + TSS region transcription start site region 101398
Gm32048 11 53365232 to 53367449 2217 + pseudogene predicted gene, 32048
Tssr101399 11 53370939 to 53370945 6 + TSS region transcription start site region 101399
Tssr101400 11 53372475 to 53372501 26 + TSS region transcription start site region 101400
Gm25930 11 53390402 to 53390508 106 + snRNA gene predicted gene, 25930
D11Ertd142e 11 53404961 to 53405196 235 DNA segment DNA segment, Chr 11, ERATO Doi 142, expressed
Mir6920 11 53409197 to 53409267 70 + miRNA gene microRNA 6920
Leap2 11 53422181 to 53423136 955 - protein coding gene liver-expressed antimicrobial peptide 2
Tssr107920 11 53423123 to 53423135 12 - TSS region transcription start site region 107920
Uqcrq 11 53427922 to 53430831 2909 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit VII
Cpgi2862 11 53430224 to 53431519 1295 CpG island CpG island 2862
Tssr107921 11 53430380 to 53430389 9 - TSS region transcription start site region 107921
Tssr107922 11 53430392 to 53430405 13 - TSS region transcription start site region 107922
Tssr107923 11 53430417 to 53430433 16 - TSS region transcription start site region 107923
Tssr107924 11 53430445 to 53430464 19 - TSS region transcription start site region 107924
Tssr101401 11 53430453 to 53430464 11 + TSS region transcription start site region 101401
Tssr107925 11 53430468 to 53430480 12 - TSS region transcription start site region 107925
Tssr107926 11 53430497 to 53430507 10 - TSS region transcription start site region 107926
Tssr107927 11 53430750 to 53430761 11 - TSS region transcription start site region 107927
Tssr107928 11 53430779 to 53430838 59 - TSS region transcription start site region 107928
Gdf9 11 53431023 to 53437904 6881 + protein coding gene growth differentiation factor 9
Tssr101402 11 53433347 to 53433357 10 + TSS region transcription start site region 101402
Gm30585 11 53452365 to 53454789 2424 - lncRNA gene predicted gene, 30585
D11Mit24 11 53453326 to 53453562 236 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 24
Gm10447 11 53454804 to 53457110 2306 - protein coding gene predicted gene 10447
Cpgi2863 11 53456976 to 53457707 731 CpG island CpG island 2863
Tssr101403 11 53457184 to 53457201 17 + TSS region transcription start site region 101403
Shroom1 11 53457205 to 53467766 10561 + protein coding gene shroom family member 1
Tssr101404 11 53457209 to 53457265 56 + TSS region transcription start site region 101404
Tssr101405 11 53457273 to 53457300 27 + TSS region transcription start site region 101405
Gm12212 11 53462379 to 53463613 1234 - antisense lncRNA gene predicted gene 12212
Cpgi2864 11 53463254 to 53464152 898 CpG island CpG island 2864
Cpgi2865 11 53466356 to 53467091 735 CpG island CpG island 2865
Gm9837 11 53469749 to 53470479 730 - protein coding gene predicted gene 9837
Cpgi2866 11 53470059 to 53470578 519 CpG island CpG island 2866
Sowaha 11 53476578 to 53480195 3617 - protein coding gene sosondowah ankyrin repeat domain family member A
Cpgi2867 11 53478232 to 53480325 2093 CpG island CpG island 2867
Tssr101406 11 53478851 to 53478858 7 + TSS region transcription start site region 101406
Tssr107929 11 53479960 to 53479990 30 - TSS region transcription start site region 107929
Tssr107930 11 53480010 to 53480024 14 - TSS region transcription start site region 107930
Tssr107931 11 53480159 to 53480176 17 - TSS region transcription start site region 107931
Gm9945 11 53480166 to 53481097 931 + protein coding gene predicted gene 9945
Tssr107932 11 53480178 to 53480216 38 - TSS region transcription start site region 107932
Tssr107933 11 53480222 to 53480241 19 - TSS region transcription start site region 107933
Gm19835 11 53483084 to 53487995 4911 - lncRNA gene predicted gene, 19835
Cpgi2868 11 53487318 to 53487593 275 CpG island CpG island 2868
Tssr101407 11 53501158 to 53501159 1 + TSS region transcription start site region 101407
Rpl9-ps3 11 53501184 to 53501759 575 + pseudogene ribosomal protein L9, pseudogene 3
Tssr101408 11 53515314 to 53515316 2 + TSS region transcription start site region 101408
Cpgi2869 11 53519389 to 53520620 1231 CpG island CpG island 2869
Tssr101409 11 53519725 to 53519791 66 + TSS region transcription start site region 101409
Sept8 11 53519736 to 53549603 29867 + protein coding gene septin 8
Tssr101410 11 53519871 to 53519917 46 + TSS region transcription start site region 101410
Tssr101411 11 53519920 to 53519933 13 + TSS region transcription start site region 101411
Tssr101412 11 53519968 to 53519977 9 + TSS region transcription start site region 101412
Cpgi2870 11 53539158 to 53539419 261 CpG island CpG island 2870
Tssr101413 11 53543712 to 53543736 24 + TSS region transcription start site region 101413
Cycl 11 53548198 to 53548497 299 - pseudogene cyclin-like
Tssr101414 11 53548743 to 53548748 5 + TSS region transcription start site region 101414
A430108G06Rik 11 53564688 to 53567313 2625 - lncRNA gene RIKEN cDNA A430108G06 gene
Cpgi2871 11 53567144 to 53568013 869 CpG island CpG island 2871
Tssr101415 11 53567361 to 53567428 67 + TSS region transcription start site region 101415
Kif3a 11 53567379 to 53601967 34588 + protein coding gene kinesin family member 3A
Tssr101416 11 53582220 to 53582226 6 + TSS region transcription start site region 101416
Tssr101417 11 53583894 to 53583906 12 + TSS region transcription start site region 101417
Tssr101418 11 53583920 to 53583934 14 + TSS region transcription start site region 101418
Tssr101419 11 53583962 to 53583973 11 + TSS region transcription start site region 101419
Tssr101420 11 53584373 to 53584393 20 + TSS region transcription start site region 101420
Tssr101421 11 53586831 to 53586843 12 + TSS region transcription start site region 101421
Tssr107934 11 53586905 to 53586925 20 - TSS region transcription start site region 107934
Cpgi2872 11 53590499 to 53590685 186 CpG island CpG island 2872