Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:52279249-53251205

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcf7 11 52252371 to 52283014 30643 - protein coding gene transcription factor 7, T cell specific
A630014C17Rik 11 52276055 to 52286179 10124 + antisense lncRNA gene RIKEN cDNA A630014C17 gene
Tssr101334 11 52280001 to 52280033 32 + TSS region transcription start site region 101334
Tssr107876 11 52280207 to 52280221 14 - TSS region transcription start site region 107876
Tssr107877 11 52280239 to 52280249 10 - TSS region transcription start site region 107877
Tssr107878 11 52281776 to 52281784 8 - TSS region transcription start site region 107878
Tssr107879 11 52281833 to 52281866 33 - TSS region transcription start site region 107879
Tssr107880 11 52282295 to 52282307 12 - TSS region transcription start site region 107880
Tssr107881 11 52282319 to 52282334 15 - TSS region transcription start site region 107881
Cpgi2853 11 52282375 to 52284594 2219 CpG island CpG island 2853
Tssr107882 11 52282564 to 52282579 15 - TSS region transcription start site region 107882
Tssr101335 11 52282688 to 52282705 17 + TSS region transcription start site region 101335
Tssr107883 11 52282758 to 52282772 14 - TSS region transcription start site region 107883
Tssr107884 11 52282803 to 52282826 23 - TSS region transcription start site region 107884
Tssr107885 11 52283230 to 52283239 9 - TSS region transcription start site region 107885
Tssr107886 11 52283248 to 52283270 22 - TSS region transcription start site region 107886
Tssr107887 11 52283302 to 52283394 92 - TSS region transcription start site region 107887
Tssr107888 11 52284392 to 52284417 25 - TSS region transcription start site region 107888
Tssr101336 11 52299807 to 52299819 12 + TSS region transcription start site region 101336
Tssr101337 11 52300076 to 52300084 8 + TSS region transcription start site region 101337
Tssr107889 11 52306613 to 52306624 11 - TSS region transcription start site region 107889
Tssr107890 11 52306711 to 52306723 12 - TSS region transcription start site region 107890
Tssr101338 11 52306763 to 52306776 13 + TSS region transcription start site region 101338
Tssr101339 11 52306782 to 52306793 11 + TSS region transcription start site region 101339
Tssr101340 11 52306972 to 52306988 16 + TSS region transcription start site region 101340
Gm30217 11 52307118 to 52318720 11602 + lncRNA gene predicted gene, 30217
Tssr101341 11 52307626 to 52307639 13 + TSS region transcription start site region 101341
Tssr101342 11 52307774 to 52307792 18 + TSS region transcription start site region 101342
Tssr101343 11 52307797 to 52307806 9 + TSS region transcription start site region 101343
Tssr101344 11 52307807 to 52307822 15 + TSS region transcription start site region 101344
Tssr101345 11 52307860 to 52307863 3 + TSS region transcription start site region 101345
Tssr101346 11 52307926 to 52307937 11 + TSS region transcription start site region 101346
Tssr101347 11 52309507 to 52309533 26 + TSS region transcription start site region 101347
Tssr101348 11 52309663 to 52309672 9 + TSS region transcription start site region 101348
Tssr101349 11 52310989 to 52310998 9 + TSS region transcription start site region 101349
Tssr101350 11 52311003 to 52311022 19 + TSS region transcription start site region 101350
Tssr101351 11 52311025 to 52311048 23 + TSS region transcription start site region 101351
Tssr101352 11 52311165 to 52311194 29 + TSS region transcription start site region 101352
Cpgi2854 11 52314166 to 52314444 278 CpG island CpG island 2854
Tssr101353 11 52318759 to 52318770 11 + TSS region transcription start site region 101353
Tssr107891 11 52332557 to 52332568 11 - TSS region transcription start site region 107891
Tssr107892 11 52336079 to 52336094 15 - TSS region transcription start site region 107892
Tssr101354 11 52336258 to 52336267 9 + TSS region transcription start site region 101354
Tssr101355 11 52339763 to 52339772 9 + TSS region transcription start site region 101355
D11Mit87 11 52343766 to 52343904 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 87
Cpgi2855 11 52360329 to 52361961 1632 CpG island CpG island 2855
Tssr101356 11 52360824 to 52360935 111 + TSS region transcription start site region 101356
Vdac1 11 52360862 to 52389397 28535 + protein coding gene voltage-dependent anion channel 1
Tssr107893 11 52360939 to 52360955 16 - TSS region transcription start site region 107893
Tssr107894 11 52360963 to 52361013 50 - TSS region transcription start site region 107894
Tssr101357 11 52361049 to 52361064 15 + TSS region transcription start site region 101357
Tssr101358 11 52361069 to 52361126 57 + TSS region transcription start site region 101358
Tssr101359 11 52374294 to 52374320 26 + TSS region transcription start site region 101359
Tssr101360 11 52389139 to 52389146 7 + TSS region transcription start site region 101360
Tssr107895 11 52390049 to 52390082 33 - TSS region transcription start site region 107895
Cpgi2856 11 52396267 to 52397167 900 CpG island CpG island 2856
Tssr101361 11 52396390 to 52396395 5 + TSS region transcription start site region 101361
Tssr101362 11 52396414 to 52396449 35 + TSS region transcription start site region 101362
9530068E07Rik 11 52396428 to 52408723 12295 + protein coding gene RIKEN cDNA 9530068E07 gene
Tssr101363 11 52396451 to 52396473 22 + TSS region transcription start site region 101363
Tssr101364 11 52396482 to 52396494 12 + TSS region transcription start site region 101364
Tssr101365 11 52396540 to 52396543 3 + TSS region transcription start site region 101365
Tssr101366 11 52396585 to 52396601 16 + TSS region transcription start site region 101366
Tssr101367 11 52402911 to 52402932 21 + TSS region transcription start site region 101367
Tssr107896 11 52403368 to 52403390 22 - TSS region transcription start site region 107896
Tssr101368 11 52403441 to 52403481 40 + TSS region transcription start site region 101368
Tssr101369 11 52405255 to 52405262 7 + TSS region transcription start site region 101369
Gm12208 11 52405316 to 52405478 162 + pseudogene predicted gene 12208
Tssr101370 11 52407171 to 52407185 14 + TSS region transcription start site region 101370
Tssr101371 11 52407402 to 52407454 52 + TSS region transcription start site region 101371
Gm12209 11 52478508 to 52479103 595 - pseudogene predicted gene 12209
Cpgi2857 11 52480784 to 52481066 282 CpG island CpG island 2857
Tssr107897 11 52480916 to 52480923 7 - TSS region transcription start site region 107897
Gm12210 11 52487158 to 52487310 152 - pseudogene predicted gene 12210
Tssr101372 11 52569218 to 52569219 1 + TSS region transcription start site region 101372
Gm30366 11 52579322 to 52663853 84531 + lncRNA gene predicted gene, 30366
Gm39823 11 52705779 to 52707045 1266 + lncRNA gene predicted gene, 39823
Cpgi2858 11 52764249 to 52766205 1956 CpG island CpG island 2858
Fstl4 11 52764634 to 53188538 423904 + protein coding gene follistatin-like 4
Tssr101373 11 52764651 to 52764693 42 + TSS region transcription start site region 101373
Tssr101374 11 52816367 to 52816370 3 + TSS region transcription start site region 101374
Tssr101375 11 52820214 to 52820216 2 + TSS region transcription start site region 101375
Tssr101376 11 52860424 to 52860426 2 + TSS region transcription start site region 101376
Tssr107898 11 52997396 to 52997418 22 - TSS region transcription start site region 107898
Gm39824 11 53036474 to 53042619 6145 - lncRNA gene predicted gene, 39824
D11Mit311 11 53077240 to 53077356 116 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 311
Gm11186 11 53111451 to 53120056 8605 - antisense lncRNA gene predicted gene 11186
D11Mit273 11 53143826 to 53143949 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 273
D11Mit141 11 53143833 to 53143981 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 141
Tssr101377 11 53187606 to 53187611 5 + TSS region transcription start site region 101377
Gm11189 11 53200684 to 53201058 374 + pseudogene predicted gene 11189
D11Mit240 11 53228937 to 53229086 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 240