Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:52116884-52346897

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26551 11 51949882 to 52269514 319632 - lincRNA gene predicted gene, 26551
Ppp2ca 11 52098824 to 52122749 23925 + protein coding gene protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
Gm30631 11 52116311 to 52117008 697 - pseudogene predicted gene, 30631
Tssr101312 11 52117997 to 52118010 13 + TSS region transcription start site region 101312
Tssr101313 11 52120914 to 52120921 7 + TSS region transcription start site region 101313
Tssr107847 11 52120960 to 52120975 15 - TSS region transcription start site region 107847
Tssr101314 11 52121902 to 52121957 55 + TSS region transcription start site region 101314
Tssr101315 11 52122263 to 52122279 16 + TSS region transcription start site region 101315
Tssr101316 11 52122417 to 52122432 15 + TSS region transcription start site region 101316
9430098F02Rik 11 52124530 to 52127779 3249 - lincRNA gene RIKEN cDNA 9430098F02 gene
Mir3061 11 52126746 to 52126836 90 + miRNA gene microRNA 3061
Olfr1373 11 52144593 to 52145528 935 - protein coding gene olfactory receptor 1373
Olfr1372-ps1 11 52154876 to 52157907 3031 - pseudogene olfactory receptor 1372, pseudogene 1
Cpgi2849 11 52167144 to 52168440 1296 CpG island CpG island 2849
Tssr107848 11 52168117 to 52168137 20 - TSS region transcription start site region 107848
Cpgi2850 11 52187096 to 52187418 322 CpG island CpG island 2850
Gm12206 11 52188953 to 52189553 600 + pseudogene predicted gene 12206
Olfr1371 11 52213052 to 52213987 935 - protein coding gene olfactory receptor 1371
Cpgi2851 11 52224135 to 52224496 361 CpG island CpG island 2851
Tssr101317 11 52224315 to 52224356 41 + TSS region transcription start site region 101317
Tssr3490 11 52224620 to 52224641 21 + TSS region transcription start site region 3490
Tssr101318 11 52224672 to 52224683 11 + TSS region transcription start site region 101318
Tssr3491 11 52230872 to 52230884 12 + TSS region transcription start site region 3491
Cpgi2852 11 52231697 to 52232623 926 CpG island CpG island 2852
Tssr107849 11 52231884 to 52231897 13 - TSS region transcription start site region 107849
Skp1a 11 52231995 to 52246858 14863 + protein coding gene S-phase kinase-associated protein 1A
Tssr101319 11 52232028 to 52232041 13 + TSS region transcription start site region 101319
Tssr101320 11 52232175 to 52232180 5 + TSS region transcription start site region 101320
Tssr101321 11 52232183 to 52232228 45 + TSS region transcription start site region 101321
Tssr101322 11 52232237 to 52232256 19 + TSS region transcription start site region 101322
Tssr101323 11 52232264 to 52232286 22 + TSS region transcription start site region 101323
Tssr101324 11 52232306 to 52232315 9 + TSS region transcription start site region 101324
Gm12207 11 52233724 to 52236619 2895 + antisense lncRNA gene predicted gene 12207
D11Pjn4 11 52236615 to 52236770 155 DNA segment DNA segment, Chr 11, Patsy J. Nishina 4
Tssr3492 11 52241793 to 52241797 4 + TSS region transcription start site region 3492
Tssr101325 11 52246187 to 52246208 21 + TSS region transcription start site region 101325
Tssr101326 11 52246551 to 52246559 8 + TSS region transcription start site region 101326
Tcf7 11 52252371 to 52283014 30643 - protein coding gene transcription factor 7, T cell specific
Tssr107850 11 52252654 to 52252669 15 - TSS region transcription start site region 107850
Tssr107851 11 52252886 to 52252901 15 - TSS region transcription start site region 107851
Tssr107852 11 52253482 to 52253493 11 - TSS region transcription start site region 107852
Tssr101327 11 52253661 to 52253698 37 + TSS region transcription start site region 101327
Tssr101328 11 52253712 to 52253758 46 + TSS region transcription start site region 101328
Tssr107853 11 52253719 to 52253750 31 - TSS region transcription start site region 107853
Tssr107854 11 52253822 to 52253836 14 - TSS region transcription start site region 107854
Tssr107855 11 52253859 to 52253890 31 - TSS region transcription start site region 107855
Tssr3493 11 52253871 to 52253885 14 + TSS region transcription start site region 3493
Tssr107856 11 52253903 to 52253932 29 - TSS region transcription start site region 107856
Tssr101329 11 52256251 to 52256283 32 + TSS region transcription start site region 101329
Tssr107857 11 52256836 to 52256856 20 - TSS region transcription start site region 107857
Tssr107858 11 52256976 to 52256998 22 - TSS region transcription start site region 107858
Tssr107859 11 52257000 to 52257025 25 - TSS region transcription start site region 107859
Tssr107860 11 52257061 to 52257087 26 - TSS region transcription start site region 107860
Tssr107861 11 52257724 to 52257781 57 - TSS region transcription start site region 107861
Tssr107862 11 52257793 to 52257809 16 - TSS region transcription start site region 107862
Tssr107863 11 52258888 to 52258899 11 - TSS region transcription start site region 107863
Tssr107864 11 52260593 to 52260625 32 - TSS region transcription start site region 107864
Tssr101330 11 52261505 to 52261531 26 + TSS region transcription start site region 101330
Tssr101331 11 52261537 to 52261564 27 + TSS region transcription start site region 101331
Tssr107865 11 52261542 to 52261565 23 - TSS region transcription start site region 107865
Tssr107866 11 52261575 to 52261600 25 - TSS region transcription start site region 107866
Tssr107867 11 52263801 to 52263810 9 - TSS region transcription start site region 107867
Tssr107868 11 52264785 to 52264804 19 - TSS region transcription start site region 107868
Tssr107869 11 52264972 to 52265018 46 - TSS region transcription start site region 107869
Tssr101332 11 52265746 to 52265752 6 + TSS region transcription start site region 101332
Tssr107870 11 52271453 to 52271471 18 - TSS region transcription start site region 107870
Tssr107871 11 52274841 to 52274897 56 - TSS region transcription start site region 107871
Tssr107872 11 52275522 to 52275533 11 - TSS region transcription start site region 107872
Tssr101333 11 52275611 to 52275662 51 + TSS region transcription start site region 101333
A630014C17Rik 11 52276055 to 52286179 10124 + antisense lncRNA gene RIKEN cDNA A630014C17 gene
Tssr107873 11 52277148 to 52277164 16 - TSS region transcription start site region 107873
Tssr107874 11 52277360 to 52277371 11 - TSS region transcription start site region 107874
Tssr107875 11 52279071 to 52279111 40 - TSS region transcription start site region 107875
Tssr101334 11 52280001 to 52280033 32 + TSS region transcription start site region 101334
Tssr107876 11 52280207 to 52280221 14 - TSS region transcription start site region 107876
Tssr107877 11 52280239 to 52280249 10 - TSS region transcription start site region 107877
Tssr107878 11 52281776 to 52281784 8 - TSS region transcription start site region 107878
Tssr107879 11 52281833 to 52281866 33 - TSS region transcription start site region 107879
Tssr107880 11 52282295 to 52282307 12 - TSS region transcription start site region 107880
Tssr107881 11 52282319 to 52282334 15 - TSS region transcription start site region 107881
Cpgi2853 11 52282375 to 52284594 2219 CpG island CpG island 2853
Tssr107882 11 52282564 to 52282579 15 - TSS region transcription start site region 107882
Tssr101335 11 52282688 to 52282705 17 + TSS region transcription start site region 101335
Tssr107883 11 52282758 to 52282772 14 - TSS region transcription start site region 107883
Tssr107884 11 52282803 to 52282826 23 - TSS region transcription start site region 107884
Tssr107885 11 52283230 to 52283239 9 - TSS region transcription start site region 107885
Tssr107886 11 52283248 to 52283270 22 - TSS region transcription start site region 107886
Tssr107887 11 52283302 to 52283394 92 - TSS region transcription start site region 107887
Tssr107888 11 52284392 to 52284417 25 - TSS region transcription start site region 107888
Tssr101336 11 52299807 to 52299819 12 + TSS region transcription start site region 101336
Tssr101337 11 52300076 to 52300084 8 + TSS region transcription start site region 101337
Tssr107889 11 52306613 to 52306624 11 - TSS region transcription start site region 107889
Tssr107890 11 52306711 to 52306723 12 - TSS region transcription start site region 107890
Tssr101338 11 52306763 to 52306776 13 + TSS region transcription start site region 101338
Tssr101339 11 52306782 to 52306793 11 + TSS region transcription start site region 101339
Tssr101340 11 52306972 to 52306988 16 + TSS region transcription start site region 101340
Gm30217 11 52307118 to 52318720 11602 + lncRNA gene predicted gene, 30217
Tssr101341 11 52307626 to 52307639 13 + TSS region transcription start site region 101341
Tssr101342 11 52307774 to 52307792 18 + TSS region transcription start site region 101342
Tssr101343 11 52307797 to 52307806 9 + TSS region transcription start site region 101343
Tssr101344 11 52307807 to 52307822 15 + TSS region transcription start site region 101344
Tssr101345 11 52307860 to 52307863 3 + TSS region transcription start site region 101345
Tssr101346 11 52307926 to 52307937 11 + TSS region transcription start site region 101346
Tssr101347 11 52309507 to 52309533 26 + TSS region transcription start site region 101347
Tssr101348 11 52309663 to 52309672 9 + TSS region transcription start site region 101348
Tssr101349 11 52310989 to 52310998 9 + TSS region transcription start site region 101349
Tssr101350 11 52311003 to 52311022 19 + TSS region transcription start site region 101350
Tssr101351 11 52311025 to 52311048 23 + TSS region transcription start site region 101351
Tssr101352 11 52311165 to 52311194 29 + TSS region transcription start site region 101352
Cpgi2854 11 52314166 to 52314444 278 CpG island CpG island 2854
Tssr101353 11 52318759 to 52318770 11 + TSS region transcription start site region 101353
Tssr107891 11 52332557 to 52332568 11 - TSS region transcription start site region 107891
Tssr107892 11 52336079 to 52336094 15 - TSS region transcription start site region 107892
Tssr101354 11 52336258 to 52336267 9 + TSS region transcription start site region 101354
Tssr101355 11 52339763 to 52339772 9 + TSS region transcription start site region 101355
D11Mit87 11 52343766 to 52343904 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 87