Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:52003815-52193842

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2847 11 52004052 to 52004568 516 CpG island CpG island 2847
Tssr101304 11 52004191 to 52004217 26 + TSS region transcription start site region 101304
Tssr101305 11 52004220 to 52004311 91 + TSS region transcription start site region 101305
Cdkl3 11 52004221 to 52089784 85563 + protein coding gene cyclin-dependent kinase-like 3
Tssr101306 11 52004313 to 52004335 22 + TSS region transcription start site region 101306
Tssr101307 11 52004340 to 52004366 26 + TSS region transcription start site region 101307
Gm12205 11 52038850 to 52039471 621 - antisense lncRNA gene predicted gene 12205
D11Mit154 11 52048521 to 52048633 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 154
Gm2769 11 52097305 to 52098824 1519 protein coding gene predicted gene 2769
Cpgi2848 11 52098124 to 52099731 1607 CpG island CpG island 2848
Tssr107845 11 52098515 to 52098533 18 - TSS region transcription start site region 107845
Tssr101308 11 52098785 to 52098796 11 + TSS region transcription start site region 101308
Tssr101309 11 52098802 to 52098813 11 + TSS region transcription start site region 101309
Tssr101310 11 52098815 to 52098842 27 + TSS region transcription start site region 101310
Ppp2ca 11 52098824 to 52122749 23925 + protein coding gene protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
Tssr101311 11 52098852 to 52098875 23 + TSS region transcription start site region 101311
Gm24157 11 52099043 to 52099153 110 - miRNA gene predicted gene, 24157
Tssr107846 11 52099711 to 52099739 28 - TSS region transcription start site region 107846
Gm30631 11 52116311 to 52117008 697 - pseudogene predicted gene, 30631
Tssr101312 11 52117997 to 52118010 13 + TSS region transcription start site region 101312
Tssr101313 11 52120914 to 52120921 7 + TSS region transcription start site region 101313
Tssr107847 11 52120960 to 52120975 15 - TSS region transcription start site region 107847
Tssr101314 11 52121902 to 52121957 55 + TSS region transcription start site region 101314
Tssr101315 11 52122263 to 52122279 16 + TSS region transcription start site region 101315
Tssr101316 11 52122417 to 52122432 15 + TSS region transcription start site region 101316
9430098F02Rik 11 52124530 to 52127779 3249 - lincRNA gene RIKEN cDNA 9430098F02 gene
Mir3061 11 52126746 to 52126836 90 + miRNA gene microRNA 3061
Olfr1373 11 52144593 to 52145528 935 - protein coding gene olfactory receptor 1373
Olfr1372-ps1 11 52154876 to 52157907 3031 - pseudogene olfactory receptor 1372, pseudogene 1
Cpgi2849 11 52167144 to 52168440 1296 CpG island CpG island 2849
Tssr107848 11 52168117 to 52168137 20 - TSS region transcription start site region 107848
Cpgi2850 11 52187096 to 52187418 322 CpG island CpG island 2850
Gm12206 11 52188953 to 52189553 600 + pseudogene predicted gene 12206